CSPI06G25110 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G25110
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	60S ribosomal protein L24
Location	Chr6 : 22361590 .. 22363348 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTTCTAGGGTTTCGGCGACCACGAAGAAACGGAGGAGTAACAACTGCAGCCGCCACCATGGTGTTGAAGTTAGTCTCTATGGCAGCTCTTTCTGATTCATAGTTGTATTGATTTCATTTAGTTTTCCGCATTCCTTTTAAGTTTCTTTCGTAATCGATGATTGCATCCATTATGGCGAAATAGAGGTGGATCAATGATACTATCTTTCAAACATATAGGTTCTTTCTTAGGTGAATTTGATATGTAGGTCAGTAGGCTCGTTACGATTGTTGGGTTTGAAGAAGTAGTGGCTTATACTGTGAGAATGTGATGACTTGTGGTGGTAGATATGCGTATTTCGTTATTGATTGATTCTGAAATGTAATCTGCTTTGGTAGGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTAATTAACCTGTCCAGCCACTGATTGAGTTGGAGTTGTAACTGGATAATTTTATTTCTCTCCTTTCTTTTGGTATGATTTTACCTGCTGTTTAAATTGTAATCTTGTTTGGATTCACTAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGATACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGTAAAAAAGGAATTTTAGTTCTGGGAATTTTATTTTTTGTGTATGTTTATAACATTCTGTTATATCGTGTTCTGTTTGCAACAGAGTGATTTGCACATTTAGATCATCATTTCTATGATATCGTATCCTGTTTGATAGCTTTGGTTTTGGATGGGTAATTTTAAAACAAAACTATAGGTCTGTGTTAGATCATGATTTTTATCAAAATAGAGGTTTCTGTTTTGTGGAAACACATGCCTAATTATTTACTGTCTTATGCCTTGTTAACCATGATTTTTACTAGATGATTGGGAAATATTTAACATTTCTTCTCTTTTTATTCGTGTAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGGTATGTGATTGTTCTAAGTTTGAAATATCATCTATTCTTTAGAAAGGCCAAATGTTGACATTTGATATTTATTAATCAGATATCTTGTGTTTTTTCTTGGGCTGCAGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTGAACTCTCTATGCTGTAAGCTAAGAAGAGTAGTAAGCTTTTGATTGTCTTTTGAATAGCAAGCCTGAGTAAAAGATAATGTTTGTTTATTTCCAAAATTTTGAATGGATCAATTATTGCATTTATGGTACCAATATCAGAGTTCTGCATTTTGTTTCCCTGTTAATTTGCATGATTATGAATGATAACTACTTGACTATGTTCAATAGGGACATGGTTCAAATTTCCATTAAAATTTTATTTGCTTACCTTTTGGATTCATGAAGTATGGATAGAGATTATTTGGGCAACACGGATAGCTGTTGAGCACTCGCATTTGAAGTTTTTGTTTCGAGATTTTGTT

mRNA sequence

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGATACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTGA

Coding sequence (CDS)

ATGGTGTTGAAGACCGAGCTTTGTCGATTCAGTGGTGCGAAGATATATCCCGGTAGAGGAATCAGATTTGTCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGATACTTCCATAACAGACTGAAGCCTTCTAAGCTCACCTGGACAGCAATGTACAGGAAGCAACATAAGAAGGACATTGCTCAAGAGGCTGTAAAGAAGAGGAGACGTGCCACCAAAAAACCCTACTCAAGGTCCATTGTTGGTGCTACATTGGAGGTGATCCAAAAGAAGAGATCTGAGAAGCCTGAGGTTCGCGATGCTGCAAGGGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAGACAAAGGATGAAAAGAAGGCAAAGAAAGCAGAAGTGATGGCCAAAACACAGAAGACACAGGGGAAGGGTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGCGGTGGCGGTGGAAAACGTTGA

Homology

[Close]

BLAST of CSPI06G25110 vs. Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 3.3e-75
Identity = 149/163 (91.41%), Postives = 156/163 (95.71%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K QK+QGKGNV +GA PKGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of CSPI06G25110 vs. Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 5.0e-71
Identity = 144/160 (90.00%), Postives = 154/160 (96.25%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAA-PKGPKLGG 160
           KTKDEKKAKKAEV  K+QK+QGKG++ +G A PKGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of CSPI06G25110 vs. Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 264.6 bits (675), Expect = 7.1e-70
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CSPI06G25110 vs. Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 3.3e-67
Identity = 143/165 (86.67%), Postives = 152/165 (92.12%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQ-GKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV  K+QK+Q GKG V +G+  KGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

[Close]

BLAST of CSPI06G25110 vs. Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2)

HSP 1 Score: 254.2 bits (648), Expect = 9.7e-67
Identity = 140/165 (84.85%), Postives = 148/165 (89.70%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CSPI06G25110 vs. TrEMBL
Match: A0A0A0KHD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-80
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. TrEMBL
Match: A0A061FPV3_THECC (60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.6e-76
Identity = 155/164 (94.51%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIA EAVKKRRR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAE+MAKTQKTQGKGNV +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. TrEMBL
Match: A0A067JRN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.1e-76
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDI+ EAVKK+RR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGK NVG+GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. TrEMBL
Match: W9RKY2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002275 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.0e-75
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAV+KRRRATKKPYSR+IVGATLEVIQK+R+EKPEVRDAAREAALREIKER K
Sbjct: 61  HKKDIAQEAVRKRRRATKKPYSRAIVGATLEVIQKRRTEKPEVRDAAREAALREIKERNK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AKTQKTQGKGNV +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTAKTQKTQGKGNVAKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. TrEMBL
Match: A0A0B0MZY8_GOSAR (60S ribosomal L24 OS=Gossypium arboreum GN=F383_28909 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-75
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVR DSQVFLF+NSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRGDSQVFLFSNSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRA KKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRAAKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEV AK QKTQGKGNV +G APKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVAAKQQKTQGKGNVPKGGAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24)

HSP 1 Score: 264.6 bits (675), Expect = 4.0e-71
Identity = 140/164 (85.37%), Postives = 151/164 (92.07%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+Q KGN+ + AAPK  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CSPI06G25110 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein)

HSP 1 Score: 254.2 bits (648), Expect = 5.4e-68
Identity = 140/165 (84.85%), Postives = 148/165 (89.70%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGRGIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGR-GAAPKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  +  AA KGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CSPI06G25110 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-12
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1


Query: 3   LKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K    +      AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKKIAKIR-----TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of CSPI06G25110 vs. NCBI nr
Match: gi|449451090|ref|XP_004143295.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis sativus])

HSP 1 Score: 306.2 bits (783), Expect = 3.4e-80
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. NCBI nr
Match: gi|659125126|ref|XP_008462521.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 7.6e-80
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. NCBI nr
Match: gi|590566094|ref|XP_007010133.1| (60S ribosomal protein L24-1 isoform 2 [Theobroma cacao])

HSP 1 Score: 292.4 bits (747), Expect = 5.1e-76
Identity = 155/164 (94.51%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRFVR+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIA EAVKKRRR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAE+MAKTQKTQGKGNV +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. NCBI nr
Match: gi|802740954|ref|XP_012086983.1| (PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas])

HSP 1 Score: 291.6 bits (745), Expect = 8.7e-76
Identity = 153/164 (93.29%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDI+ EAVKK+RR TKKPYSRSIVGATLEVIQK+R+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVMAKTQKTQGK NVG+GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

[Close]

BLAST of CSPI06G25110 vs. NCBI nr
Match: gi|729396314|ref|XP_010553352.1| (PREDICTED: 60S ribosomal protein L24 [Tarenaya hassleriana])

HSP 1 Score: 291.6 bits (745), Expect = 8.7e-76
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 1


Query: 1   MVLKTELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGRGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 165
           KTKDEKKAKKAEVM+K QK+Q KGN+ +GAAPKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVMSKQQKSQAKGNLSKGAAPKGPKLGGGGGKR 164

The following BLAST results are available for this feature:

BLAST of CSPI06G25110 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL24_CICAR	3.3e-75	91.41	60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1	[more]
RL24_PRUAV	5.0e-71	90.00	60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1	[more]
RL241_ARATH	7.1e-70	85.37	60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2	[more]
RL24_HORVU	3.3e-67	86.67	60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1	[more]
RL242_ARATH	9.7e-67	84.85	60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2	[more]

BLAST of CSPI06G25110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHD4_CUCSA	2.4e-80	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1	[more]
A0A061FPV3_THECC	3.6e-76	94.51	60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1	[more]
A0A067JRN7_JATCU	6.1e-76	93.29	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1	[more]
W9RKY2_9ROSA	1.0e-75	93.90	Uncharacterized protein OS=Morus notabilis GN=L484_002275 PE=4 SV=1	[more]
A0A0B0MZY8_GOSAR	1.8e-75	94.51	60S ribosomal L24 OS=Gossypium arboreum GN=F383_28909 PE=4 SV=1	[more]

BLAST of CSPI06G25110 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G36620.1	4.0e-71	85.37	ribosomal protein L24	[more]
AT3G53020.1	5.4e-68	84.85	Ribosomal protein L24e family protein	[more]
AT2G44860.1	2.5e-12	35.94	Ribosomal protein L24e family protein	[more]

BLAST of CSPI06G25110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449451090\|ref\|XP_004143295.1\|	3.4e-80	100.00	PREDICTED: 60S ribosomal protein L24 [Cucumis sativus]	[more]
gi\|659125126\|ref\|XP_008462521.1\|	7.6e-80	99.39	PREDICTED: 60S ribosomal protein L24 [Cucumis melo]	[more]
gi\|590566094\|ref\|XP_007010133.1\|	5.1e-76	94.51	60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]	[more]
gi\|802740954\|ref\|XP_012086983.1\|	8.7e-76	93.29	PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]	[more]
gi\|729396314\|ref\|XP_010553352.1\|	8.7e-76	93.90	PREDICTED: 60S ribosomal protein L24 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000988	Ribosomal_L24e-rel
IPR011017	TRASH_dom
IPR023441	Ribosomal protein L24e domain
IPR023442	Ribosomal_L24e_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G25110.1	CSPI06G25110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 4..164 score: 2.6E
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 score: 1.1
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 score: 5.
IPR023441	Ribosomal protein L24e domain	GENE3D	G3DSA:2.30.170.20		coord: 4..68 score: 9.9
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27 scor
None	No IPR available	unknown	Coil	Coil	coord: 112..139 scor
None	No IPR available	PANTHER	PTHR10792:SF11	SUBFAMILY NOT NAMED	coord: 4..164 score: 2.6E
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58 score: 5.13

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G25110	Cla018359	Watermelon (97103) v1	cpiwmB524
CSPI06G25110	Cla017744	Watermelon (97103) v1	cpiwmB467
CSPI06G25110	Csa6G449310	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G25110	Csa3G748210	Cucumber (Chinese Long) v2	cpicuB282
CSPI06G25110	MELO3C009419	Melon (DHL92) v3.5.1	cpimeB485
CSPI06G25110	MELO3C024506	Melon (DHL92) v3.5.1	cpimeB513
CSPI06G25110	ClCG04G009670	Watermelon (Charleston Gray)	cpiwcgB488
CSPI06G25110	ClCG10G019550	Watermelon (Charleston Gray)	cpiwcgB444
CSPI06G25110	Lsi03G019540	Bottle gourd (USVL1VR-Ls)	cpilsiB452
CSPI06G25110	Lsi01G012630	Bottle gourd (USVL1VR-Ls)	cpilsiB440
CSPI06G25110	MELO3C024506.2	Melon (DHL92) v3.6.1	cpimedB497
CSPI06G25110	MELO3C009419.2	Melon (DHL92) v3.6.1	cpimedB473
CSPI06G25110	CsaV3_6G040310	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G25110	CsaV3_3G036650	Cucumber (Chinese Long) v3	cpicucB334
CSPI06G25110	Cla97C10G202620	Watermelon (97103) v2	cpiwmbB442
CSPI06G25110	Cla97C04G076500	Watermelon (97103) v2	cpiwmbB479
CSPI06G25110	Bhi11G001696	Wax gourd	cpiwgoB532
CSPI06G25110	Bhi03G001156	Wax gourd	cpiwgoB635
CSPI06G25110	Cucsa.125060	Cucumber (Gy14) v1	cgycpiB168
CSPI06G25110	Cucsa.378710	Cucumber (Gy14) v1	cgycpiB559
CSPI06G25110	CmaCh07G008750	Cucurbita maxima (Rimu)	cmacpiB894
CSPI06G25110	CmaCh14G002560	Cucurbita maxima (Rimu)	cmacpiB271
CSPI06G25110	CmaCh06G004300	Cucurbita maxima (Rimu)	cmacpiB855
CSPI06G25110	CmoCh07G009080	Cucurbita moschata (Rifu)	cmocpiB874
CSPI06G25110	CmoCh06G004270	Cucurbita moschata (Rifu)	cmocpiB838
CSPI06G25110	CmoCh14G002460	Cucurbita moschata (Rifu)	cmocpiB259
CSPI06G25110	CmoCh03G011790	Cucurbita moschata (Rifu)	cmocpiB681
CSPI06G25110	Cp4.1LG08g10620	Cucurbita pepo (Zucchini)	cpecpiB878
CSPI06G25110	Cp4.1LG03g01320	Cucurbita pepo (Zucchini)	cpecpiB627
CSPI06G25110	Cp4.1LG19g03780	Cucurbita pepo (Zucchini)	cpecpiB503
CSPI06G25110	Cp4.1LG10g04340	Cucurbita pepo (Zucchini)	cpecpiB081
CSPI06G25110	CsGy6G024530	Cucumber (Gy14) v2	cgybcpiB287
CSPI06G25110	CsGy3G031810	Cucumber (Gy14) v2	cgybcpiB140
CSPI06G25110	Carg05378	Silver-seed gourd	carcpiB0845
CSPI06G25110	Carg03721	Silver-seed gourd	carcpiB0282
CSPI06G25110	Carg10455	Silver-seed gourd	carcpiB0271

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CSPI06G25110	CSPI03G34010	Wild cucumber (PI 183967)	cpicpiB124

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G25110	Silver-seed gourd	carcpiB0965
CSPI06G25110	Cucumber (Chinese Long) v3	cpicucB367
CSPI06G25110	Watermelon (97103) v2	cpiwmbB458
CSPI06G25110	Wax gourd	cpiwgoB619
CSPI06G25110	Wild cucumber (PI 183967)	cpicpiB186
CSPI06G25110	Cucumber (Gy14) v1	cgycpiB571
CSPI06G25110	Cucurbita maxima (Rimu)	cmacpiB689
CSPI06G25110	Cucurbita moschata (Rifu)	cmocpiB639
CSPI06G25110	Cucumber (Chinese Long) v2	cpicuB315
CSPI06G25110	Melon (DHL92) v3.5.1	cpimeB426
CSPI06G25110	Watermelon (Charleston Gray)	cpiwcgB463
CSPI06G25110	Watermelon (97103) v1	cpiwmB534
CSPI06G25110	Cucurbita pepo (Zucchini)	cpecpiB762
CSPI06G25110	Bottle gourd (USVL1VR-Ls)	cpilsiB423
CSPI06G25110	Melon (DHL92) v3.6.1	cpimedB420
CSPI06G25110	Cucumber (Gy14) v2	cgybcpiB290