Cp4.1LG10g04340.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAAGTCAGTCTCTATTACTCTCTTTCTGATTTTTTTTTTTTTTGTTGAATTGATTTCATTTTGTTTTCCGGATCCTTTTATTGTTATTATTATTATTTTTTTCTGATAATCGGTGATTGCGTCGTTGTGGTGAAATAGAGCAAGAACAATGTCACCTATGTGTGCTGTTTAATTAAACTTTCAGTGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGTTTGTGGTGCTAGATATGCGTAATTCGTTATTGATTGATTCTGAAATATAATGCTGGTTTTGGTAGGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTAATAAACCTGCGTGGCCGCTGATTGAGTTGTAGTTGTATCTGGATAATCTGATATATATTTTGTACTTTGATGTATACGTACCTGCTATTTTAATTTCTAACTTGGCTGGATTCACCAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGTAAGAAGTCAAATTTATTTTCTGGATTTATTTTCTTGTTGGGTATATTTATAGTCTATCATATTGTTCTTTGTCTGTTAGCTTTGATTTTGGACGGGTGATTTTGAAACAGATTGTTTTGACTGTGGTTCTTGTAGATCATAATTATCTACTGTATTATGCCCTGTTAACCACGATTTTTACTAAATAATTGGTGAATTATTGAATCCTTCTTTTCTTTTCATTCCGTAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGGTATGTGATTGTTCCAAGTTTATATTTTTCAAATTTTCTTGATAATATTGCATGTCATCAAATCTCAAGAAAAGCCAAATGTAGACATTTATATGTTTATAACGAGTACTGAATGATTTATTGATCAGCCACATATTTTGTTTAAATTATTTTAATGTATTGAATTTGTTAATCTTTGGGGTGTAGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAATGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA ATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA MYILEISRFSGELKCLSVDFIMIVGFEDVVAHPMRMTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70 Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 4.7e-68 Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2) HSP 1 Score: 256.1 bits (653), Expect = 3.0e-67 Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2) HSP 1 Score: 248.8 bits (634), Expect = 4.8e-65 Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64 Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A0A0KHD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74 Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A067JRN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72 Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A061FQJ2_THECC (60S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71 Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A061FPV3_THECC (60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71 Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A067JER1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26143 PE=4 SV=1) HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71 Identity = 148/160 (92.50%), Postives = 154/160 (96.25%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24) HSP 1 Score: 256.1 bits (653), Expect = 1.7e-68 Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein) HSP 1 Score: 248.8 bits (634), Expect = 2.7e-66 Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein) HSP 1 Score: 67.8 bits (164), Expect = 8.6e-12 Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|449451090|ref|XP_004143295.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis sativus]) HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74 Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|659125126|ref|XP_008462521.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis melo]) HSP 1 Score: 286.2 bits (731), Expect = 4.4e-74 Identity = 152/160 (95.00%), Postives = 156/160 (97.50%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|802740954|ref|XP_012086983.1| (PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas]) HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72 Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|1009160805|ref|XP_015898548.1| (PREDICTED: 60S ribosomal protein L24 [Ziziphus jujuba]) HSP 1 Score: 279.3 bits (713), Expect = 5.3e-72 Identity = 148/160 (92.50%), Postives = 153/160 (95.62%), Query Frame = 1
BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|590566091|ref|XP_007010132.1| (60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]) HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71 Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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