Cp4.1LG10g04340.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG10g04340.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description60S ribosomal protein L24
LocationCp4.1LG10 : 1544459 .. 1546186 (+)
Sequence length942
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAAGTCAGTCTCTATTACTCTCTTTCTGATTTTTTTTTTTTTTGTTGAATTGATTTCATTTTGTTTTCCGGATCCTTTTATTGTTATTATTATTATTTTTTTCTGATAATCGGTGATTGCGTCGTTGTGGTGAAATAGAGCAAGAACAATGTCACCTATGTGTGCTGTTTAATTAAACTTTCAGTGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGTTTGTGGTGCTAGATATGCGTAATTCGTTATTGATTGATTCTGAAATATAATGCTGGTTTTGGTAGGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTAATAAACCTGCGTGGCCGCTGATTGAGTTGTAGTTGTATCTGGATAATCTGATATATATTTTGTACTTTGATGTATACGTACCTGCTATTTTAATTTCTAACTTGGCTGGATTCACCAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGTAAGAAGTCAAATTTATTTTCTGGATTTATTTTCTTGTTGGGTATATTTATAGTCTATCATATTGTTCTTTGTCTGTTAGCTTTGATTTTGGACGGGTGATTTTGAAACAGATTGTTTTGACTGTGGTTCTTGTAGATCATAATTATCTACTGTATTATGCCCTGTTAACCACGATTTTTACTAAATAATTGGTGAATTATTGAATCCTTCTTTTCTTTTCATTCCGTAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGGTATGTGATTGTTCCAAGTTTATATTTTTCAAATTTTCTTGATAATATTGCATGTCATCAAATCTCAAGAAAAGCCAAATGTAGACATTTATATGTTTATAACGAGTACTGAATGATTTATTGATCAGCCACATATTTTGTTTAAATTATTTTAATGTATTGAATTTGTTAATCTTTGGGGTGTAGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA

mRNA sequence

GGTTTTCGGCGACCACGAAGAAACAGAGGAGTAGCCACTGCAGCCGCCGCCATGGTGTTGAATGCCTGGAGATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGAACTCTCCACGCTGCAAGCTAGGAAGAGTAGTTGTGAGCTTTTATGTTCTTTGATTATTTCCAAAATTTTGTATGGATAAATTATTTTGGCACATTTCTTCTTCCAGTTATGTCCCAAATATCAGAGTTCTTCATTTTTTCCCTTCAATTTACATAATTATGAGTTATAACTCGATTGCTGAAAAGGGGATTAGAAACTCTTGGTTTTTGTGAAGTTCTTGGTTTTTATGAATTTCCTTTCAAATTTTATTTGCTTACCTTTTGGATTCATATAATATATA

Coding sequence (CDS)

ATGTATATCCTTGAAATCTCTAGGTTTTCTGGCGAATTGAAATGTTTGTCAGTAGATTTCATTATGATCGTTGGGTTTGAAGATGTAGTGGCTCATCCAATGAGAATGACCGAGCTTTGTCGTTTCAGTGGCGCTAAGATATATCCCGGTAGAGGAATCAGATTTATCCGTGCTGATTCACAGGTTTTCCTGTTTGCAAACTCCAAATGCAAGAGGTACTTCCATAACAAATTGAAGCCTTCTAAGCTCACCTGGACAGCCATGTACAGGAAGCAACATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACTAAGAAGCCCTACTCGAGGTCCATAGTGGGTGCTACATTGGAGGTTATCCAGAAGAAGAGAGCTGAGAAGCCCGAGGTTCGTGACGCTGCTAGAGAAGCAGCCCTCCGTGAAATTAAGGAGAGAATTAAGAAAACGAAGGATGAAAAGAAGGCAAAGAAGGCAGAAGTGACGGCAAAAACACAGAAGACACAGAACAAGGCTAACGTTGGTAGGGGAGCTGCACCGAAAGGACCAAAGCTTGGTGGTGGCGGTGGCAAACGTTGA

Protein sequence

MYILEISRFSGELKCLSVDFIMIVGFEDVVAHPMRMTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR
BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70
Identity = 142/159 (89.31%), Postives = 148/159 (93.08%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRFIR DSQVFLF NSKCKRYFHN+LKPSKLTWTAM+RKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVKKRRR TKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGK 196
           EKKAKKAEV +K QK+Q K NV +GA PKGPK+GGGGGK
Sbjct: 125 EKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.7e-68
Identity = 140/156 (89.74%), Postives = 149/156 (95.51%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAA-PKGPKLGG 192
           EKKAKKAEVT K+QK+Q K ++ +G A PKGPKLGG
Sbjct: 125 EKKAKKAEVT-KSQKSQGKGSIAKGGAQPKGPKLGG 159

BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 3.0e-67
Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2)

HSP 1 Score: 248.8 bits (634), Expect = 4.8e-65
Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGR-GAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

BLAST of Cp4.1LG10g04340.1 vs. Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 1.1e-64
Identity = 140/161 (86.96%), Postives = 148/161 (91.93%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKP+KL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I  EA KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQ-NKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEVT K+QK+Q  K  V +G+  KGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVT-KSQKSQGGKGAVQKGS--KGPKLGGGGGKR 162

BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A0A0KHD4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.4e-74
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A067JRN7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.7e-72
Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I+ EAVKK+RRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  ISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K+NVG+GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A061FQJ2_THECC (60S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 22  TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 81

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 82  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 141

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 142 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 181

BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A061FPV3_THECC (60S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. TrEMBL
Match: A0A067JER1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26143 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.4e-71
Identity = 148/160 (92.50%), Postives = 154/160 (96.25%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ+K  V +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQSKGGVPKGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT2G36620.1 (AT2G36620.1 ribosomal protein L24)

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-68
Identity = 137/160 (85.62%), Postives = 145/160 (90.62%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK+Q K N+ + AAPK  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT3G53020.1 (AT3G53020.1 Ribosomal protein L24e family protein)

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-66
Identity = 139/161 (86.34%), Postives = 144/161 (89.44%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPGRGIRFIR+DSQVFLF NSKCKRYFHNKLKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
            AQEAVK+RRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGR-GAAPKGPKLGGGGGKR 197
           EKKAKK E  +K QK   KAN  +  AA KGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

BLAST of Cp4.1LG10g04340.1 vs. TAIR10
Match: AT2G44860.1 (AT2G44860.1 Ribosomal protein L24e family protein)

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-12
Identity = 47/125 (37.60%), Postives = 69/125 (55.20%), Query Frame = 1

Query: 38  ELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDI 97
           E C F  + IYPG GI+F+R D+++F F  SKC + F  K  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 98  AQEAV----KKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 157
            ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 158 TKDEK 159
            K +K
Sbjct: 124 NKQKK 119

BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|449451090|ref|XP_004143295.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 153/160 (95.62%), Postives = 156/160 (97.50%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPGRGIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|659125126|ref|XP_008462521.1| (PREDICTED: 60S ribosomal protein L24 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 4.4e-74
Identity = 152/160 (95.00%), Postives = 156/160 (97.50%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+RADSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRR TKKPYSRSIVGATLEVIQKKR+EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K NVGRGAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKGNVGRGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|802740954|ref|XP_012086983.1| (PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas])

HSP 1 Score: 280.4 bits (716), Expect = 2.4e-72
Identity = 148/160 (92.50%), Postives = 156/160 (97.50%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           I+ EAVKK+RRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  ISAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQKTQ K+NVG+GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVMAKTQKTQGKSNVGKGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|1009160805|ref|XP_015898548.1| (PREDICTED: 60S ribosomal protein L24 [Ziziphus jujuba])

HSP 1 Score: 279.3 bits (713), Expect = 5.3e-72
Identity = 148/160 (92.50%), Postives = 153/160 (95.62%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSG KIYPG+GIRFIR+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAEV AKTQK Q K N+ +GAAPKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKTQKAQGKVNISKGAAPKGPKLGGGGGKR 164

BLAST of Cp4.1LG10g04340.1 vs. NCBI nr
Match: gi|590566091|ref|XP_007010132.1| (60S ribosomal protein L24-1 isoform 1 [Theobroma cacao])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1

Query: 37  TELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKD 96
           TELCRFSGAKIYPG+GIRF+R+DSQVFLFANSKCKRYFHN+LKPSKLTWTAMYRKQHKKD
Sbjct: 22  TELCRFSGAKIYPGKGIRFVRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 81

Query: 97  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 156
           IA EAVKKRRRTTKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 82  IAAEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 141

Query: 157 EKKAKKAEVTAKTQKTQNKANVGRGAAPKGPKLGGGGGKR 197
           EKKAKKAE+ AKTQKTQ K NV +GAAPKGPKLGGGGGKR
Sbjct: 142 EKKAKKAELMAKTQKTQGKGNVPKGAAPKGPKLGGGGGKR 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL24_CICAR1.0e-7089.3160S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1[more]
RL24_PRUAV4.7e-6889.7460S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1[more]
RL241_ARATH3.0e-6785.6360S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2[more]
RL242_ARATH4.8e-6586.3460S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=1 SV=2[more]
RL24_HORVU1.1e-6486.9660S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KHD4_CUCSA1.4e-7495.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449310 PE=4 SV=1[more]
A0A067JRN7_JATCU1.7e-7292.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20649 PE=4 SV=1[more]
A0A061FQJ2_THECC1.1e-7191.8860S ribosomal protein L24-1 isoform 1 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1[more]
A0A061FPV3_THECC1.1e-7191.8860S ribosomal protein L24-1 isoform 2 OS=Theobroma cacao GN=TCM_043464 PE=4 SV=1[more]
A0A067JER1_JATCU1.4e-7192.50Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26143 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G36620.11.7e-6885.63 ribosomal protein L24[more]
AT3G53020.12.7e-6686.34 Ribosomal protein L24e family protein[more]
AT2G44860.18.6e-1237.60 Ribosomal protein L24e family protein[more]
Match NameE-valueIdentityDescription
gi|449451090|ref|XP_004143295.1|2.0e-7495.63PREDICTED: 60S ribosomal protein L24 [Cucumis sativus][more]
gi|659125126|ref|XP_008462521.1|4.4e-7495.00PREDICTED: 60S ribosomal protein L24 [Cucumis melo][more]
gi|802740954|ref|XP_012086983.1|2.4e-7292.50PREDICTED: 60S ribosomal protein L24-like [Jatropha curcas][more]
gi|1009160805|ref|XP_015898548.1|5.3e-7292.50PREDICTED: 60S ribosomal protein L24 [Ziziphus jujuba][more]
gi|590566091|ref|XP_007010132.1|1.5e-7191.8860S ribosomal protein L24-1 isoform 1 [Theobroma cacao][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR023442Ribosomal_L24e_CS
IPR023441Ribosomal protein L24e domain
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG10g04340Cp4.1LG10g04340gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG10g04340.1Cp4.1LG10g04340.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g04340.1:five_prime_utr:002Cp4.1LG10g04340.1:five_prime_utr:002five_prime_UTR
Cp4.1LG10g04340.1:five_prime_utr:001Cp4.1LG10g04340.1:five_prime_utr:001five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g04340.1:cds:005Cp4.1LG10g04340.1:cds:005CDS
Cp4.1LG10g04340.1:cds:004Cp4.1LG10g04340.1:cds:004CDS
Cp4.1LG10g04340.1:cds:003Cp4.1LG10g04340.1:cds:003CDS
Cp4.1LG10g04340.1:cds:002Cp4.1LG10g04340.1:cds:002CDS
Cp4.1LG10g04340.1:cds:001Cp4.1LG10g04340.1:cds:001CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG10g04340.1:three_prime_utr:001Cp4.1LG10g04340.1:three_prime_utr:001three_prime_UTR


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 36..196
score: 1.1E
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 37..99
score: 1.3
IPR011017TRASH domainSMARTSM007464TRASHcoord: 40..78
score: 5.
IPR023441Ribosomal protein L24e domainGENE3DG3DSA:2.30.170.20coord: 37..100
score: 7.5
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 42..59
scor
NoneNo IPR availableunknownCoilCoilcoord: 144..171
scor
NoneNo IPR availablePANTHERPTHR10792:SF11SUBFAMILY NOT NAMEDcoord: 36..196
score: 1.1E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 38..90
score: 8.84