Cp4.1LG10g03320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g03320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING-H2 zinc finger protein
LocationCp4.1LG10 : 2075728 .. 2077723 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCACTAATTCAAGGAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGCGCAGCTGCGACCTGGGTTCGGGAGCTTTGACATGAACGTAGTGATGGTCCTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATCCTAAAATGCGCGTTGCGGTGTTCCAGTTTGTTGGCAACGATGTCGGGTGGACTTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAATTCGAGGGTGGGGATCGGGTTCGTGTATTGCCCAAATGCTACCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCACTGACAGTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGACGGCGAGTTCATCGCTATTGACCCGCCACCGCCGCCACCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGCTTGGTGTGCAACTATAGGTAAAGCAAGTAGTAGATGAGATTGAAGTGGTAAGTGGGGCTGTGGGGTTGGGCTTTTTTTGTGATTGATGGAGCATTTTGGTTCTTTTTGCTTTAGCTTACAAGTAAGCATCTTTTTTTTTTTTTCTTTTTTTCTTTTAATTAATTAGGATTATTACATCTAGCCAAGATTAGGGTACTAAATTCAAATGTAAATACCTCTTCCACTCTTTTCCCCTCAAATAAAAAGGTTTCGGTTATAATTTTCCGATCAATTAGCTCTAAATTTAAACTTTTGTCTTAACATTATTTTCATCCCCACTCTTAAATTAATTTATAAAATTTTAAATTTATTTTAGTAATATTGAAATTTGAGTTTTTAGAACCTATGTGAAATATTATATTATTAAAATATTTTATATTTTTTAAACTATATTGAAAAACATAAAATTTTCATTAAAAATTTCTTTTAAATGAATATATATATAGGAAGACTAAGAATTCTTTGCAGTGACAAGTTTATTACCAATAATGATTATTAAATATAAAAACTATTAAAAGGTCGATAATTAATCTTAAATAATGAATTATCTCTCGATTAGATATTAATTAATATGAAGTCGTGTCACGTGATTAGCGCAATTCCCGTCTAGAATTTGAATGGATCGGAGAAAGAAGGAGTGAAAGGAAGGTGAGAAAAAAGGGGCAAAAAAAAGGAAGGCAAGAGAGGAATGGGAATGGAAGGTGAGAGTGAAAAGCAAAACATAAATTGCACTGAAAAAGGGAGAATTTGGATGATAGAGTTCACATGTTGTGTTTGTTAGAACACATATATAATATATCACATACACCAACCCAAATACCCCAATATATATATATATATATAGAAGCATTGTACCATGTGCAAATGTTCCTTTGTCTTGCTGTCTTTGTGGAATGTTGTTGGTGATGTGTATCTCGAATGTCACCTCGACACATCCCTCTCAACCCCGACCTTTCTAGAACTTTTTTTAACTTGTTTATACTTCATTTGGTAATATTCTCACTCTTAGCTCGTGACATTTCCTATTTTCAATCATAATAAATAATAATAAATGTAAATACATTTTACTTCTAAAGTTAATGTTAAAACTATCTTACTCAGCTTCATAATTTTAAAAACAAATATATATTATTTATAATATTATTTTTTTGTAAAAACTTTTTATCTTTCTCTCTCCTCTCCGCCATAATCCCATCCCCGCCGGCGGCCGCTGCCCGCCAACTTTTCTTCCTTTTTTTTTTCCCTTCTTCTTGACTTCAGGAAGCTATTAGTGACCAAAGCTTCAATCCTGACGGACCCGCCGCCATCCGTGGATGAGCTGAATTCTGTTTGGGCGCCGTAG

mRNA sequence

ATGTCTATCACTAATTCAAGGAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGCGCAGCTGCGACCTGGGTTCGGGAGCTTTGACATGAACGTAGTGATGGTCCTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATCCTAAAATGCGCGTTGCGGTGTTCCAGTTTGTTGGCAACGATGTCGGGTGGACTTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAATTCGAGGGTGGGGATCGGGTTCGTGTATTGCCCAAATGCTACCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCACTGACAGTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGACGGCGAGTTCATCGCTATTGACCCGCCACCGCCGCCACCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGCTTGGTGTGCAACTATAGGAAGCTATTAGTGACCAAAGCTTCAATCCTGACGGACCCGCCGCCATCCGTGGATGAGCTGAATTCTGTTTGGGCGCCGTAG

Coding sequence (CDS)

ATGTCTATCACTAATTCAAGGAGGCTTCTCCTTCCCGCCGTGACCGCCAGTCCGCCGGTGTCAGCGCAGCTGCGACCTGGGTTCGGGAGCTTTGACATGAACGTAGTGATGGTCCTTTCGGTTCTCCTCTGTGCTCTAGTTTGCTCTCTGGGTCTCAACGCGATCCTAAAATGCGCGTTGCGGTGTTCCAGTTTGTTGGCAACGATGTCGGGTGGACTTGGCGGTGGGATTTTGGCGGTGCATCCGAAAGGTGTTCGACGAAATGTCTTAAAGAAATTTCCGACGGTGGAATACCCAAAAGAGGGGAATAAATTAAGGGGAATCGATGGGGAATGCGTGATTTGTTTGTCGGAATTCGAGGGTGGGGATCGGGTTCGTGTATTGCCCAAATGCTACCATGGCTTCCACGTTCATTGCATTGATAAATGGCTGAGTTCCCATAATTCTTGCCCCAAGTGCCGCAATTGCCTCACTGACAGTTGCCATAAGATCGCCGCTGGAGGCAGCCAGGAGGCGCCTGACGGCGAGTTCATCGCTATTGACCCGCCACCGCCGCCACCTCCGGGGGAGGAAGTGGTTGTGAATGTTGTTATTGCTCCGGTGGAACGGGAAGGCTTGGTGTGCAACTATAGGAAGCTATTAGTGACCAAAGCTTCAATCCTGACGGACCCGCCGCCATCCGTGGATGAGCTGAATTCTGTTTGGGCGCCGTAG

Protein sequence

MSITNSRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYRKLLVTKASILTDPPPSVDELNSVWAP
Homology
[Close]
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1 

Query: 6   SRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL 65
           SR+LL      SP  +     G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS+L
Sbjct: 27  SRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNL 86

Query: 66  LATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRV 125
           + + +GG    +   +  GV+R  LK F TV Y  E N L G+D EC ICLSEF   +RV
Sbjct: 87  VPSEAGGDNYPVRLTNT-GVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 126 RVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPPPP 185
           ++LP C+HGFHV CIDKWLSSH+SCP CR+CL  +C KIA      + +           
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNS---------T 206

Query: 186 PPPGEEVVVNVVIAPVERE 205
            PP + +++   IAP+E E
Sbjct: 207 QPPQDSIILQ--IAPLEPE 212

[Close]
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.8e-34
Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1 

Query: 13  AVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL------L 72
           AV  SP ++ +      +   NV+M+LS+L+C ++C LGL+ I++CALR S+       +
Sbjct: 41  AVAPSPLITHE-----NNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPV 100

Query: 73  ATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVR 132
            ++S   G        KG+++  L+ FP V Y  E N L G+D ECVICLS+F  G+++R
Sbjct: 101 PSLSSTRGSS-----NKGIKKKALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLR 160

Query: 133 VLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQ------EAPDGEFIAI 192
           +LPKC HGFHV CIDKWL  H +CPKCRNCL ++C KI    SQ      E  +   + I
Sbjct: 161 LLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTI 220

Query: 193 DPPPP---------PPPGEEVVVNVVIAPVEREGLVCNYRKL 214
            P  P         P    E+V+ V+IAP+E EG V   R++
Sbjct: 221 VPLEPTEIVIVTIAPLEPTEIVI-VMIAPLEPEGRVNTIREI 250

[Close]
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33
Identity = 88/210 (41.90%), Postives = 125/210 (59.52%), Query Frame = 1 

Query: 5   NSRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSS 64
           NS R+   AV  SP ++ +      +   NV+M+LSVL+C ++C LGL+ I++CA R SS
Sbjct: 35  NSLRVF--AVAPSPLITHE-----NNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSS 94

Query: 65  --LLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGG 124
             +++     L     + + KG+++  L+ FP V Y +E N L GI  ECVICLS+F  G
Sbjct: 95  RFMISEPISSLSTPRSSSN-KGIKKKALRMFPVVSYSREMN-LPGIGEECVICLSDFVSG 154

Query: 125 DRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDP 184
           +++R+LPKC HGFHV CIDKWL  H +CPKCR+CL ++C KI          G+F   D 
Sbjct: 155 EQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKIL---------GDFSQADS 214

Query: 185 PPPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
               P  E V+V   I P+E EG V  +R+
Sbjct: 215 MASTPT-ESVIVR--IDPLEPEGRVNTFRE 223

[Close]
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.0e-32
Identity = 83/197 (42.13%), Postives = 117/197 (59.39%), Query Frame = 1 

Query: 13  AVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSS--LLATMS 72
           AV  SP ++ +      +   NV+M+LSVL+C ++C LGL+ I++CA R +S  +++   
Sbjct: 42  AVAPSPLITHE-----NNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPI 101

Query: 73  GGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPK 132
            GL     + + KG+ +  L+ FP V Y  E N L G+  ECVICLS+F  G+++R+LPK
Sbjct: 102 AGLSTPCGSSN-KGINKKALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPK 161

Query: 133 CYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPPPPPPPGE 192
           C+HGFHV CIDKWL  H +CPKCR+CL ++C KI          G+F   D     P   
Sbjct: 162 CHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKIL---------GDFSQADQVAATPTAS 219

Query: 193 EVVVNVVIAPVEREGLV 208
              V V IAP+E EG V
Sbjct: 222 ---VIVRIAPLEPEGRV 219

[Close]
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.0e-29
Identity = 79/209 (37.80%), Postives = 117/209 (55.98%), Query Frame = 1 

Query: 6   SRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA-LRCSS 65
           SR+LL     A     A + P   +   NV+M+LS+LLC ++CSLGL+ I++CA +R  S
Sbjct: 24  SRKLLQQIPFAHNAQQAHV-PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRS 83

Query: 66  LLATMSGGLGGGIL-AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGD 125
            + +    +      +   KG+++  LK  P V Y  E N L G+  ECVICLS+F  G+
Sbjct: 84  FMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGE 143

Query: 126 RVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPP 185
           ++RVLPKC HGFH+ CIDKWL+ H +CPKCR+CL D+C K+ +              D  
Sbjct: 144 QLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLSD------------CDAA 203

Query: 186 PPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
                     +++ I+P+E E  V  +R+
Sbjct: 204 DQVAATATESIDIRISPLEPEARVATFRE 218

[Close]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match: A0A0A0KF92_CUCSA (RING-H2 zinc finger protein OS=Cucumis sativus GN=Csa_6G484580 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.9e-89
Identity = 168/214 (78.50%), Postives = 180/214 (84.11%), Query Frame = 1 

Query: 1   MSITNSRRLLLPAVT--ASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR L+P+ T  A+PP  AQ RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+SGG GGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFI 180
           FE GDRVRVLPKCYHGFHVHCIDKWLSSH SCPKCRNCLTD+CHKI AG +QE       
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 AIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
                  PP  EEV VNVVIAPVEREG++ NYR+
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRE 214

[Close]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match: Q8W550_CUCME (RING-H2 zinc finger protein (Fragment) OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.2e-78
Identity = 142/162 (87.65%), Postives = 146/162 (90.12%), Query Frame = 1 

Query: 12  PAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSLLATMSG 71
           P   ASPP  AQ RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS+LLAT+SG
Sbjct: 6   PTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLLATVSG 65

Query: 72  GLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKC 131
           G GGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL EFE GDRVRVLPKC
Sbjct: 66  GRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKC 125

Query: 132 YHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAP 174
           YHGFHVHCIDKWLSSH SCPKCRNCLTD+CHKIAAG  QE P
Sbjct: 126 YHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETP 167

[Close]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match: A0A0D2MKD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G070100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.6e-53
Identity = 118/211 (55.92%), Postives = 145/211 (68.72%), Query Frame = 1 

Query: 7   RRLLLPAVTASPPV------SAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 66
           RRLLL   TASPP       S+ L     SFD N+VMVLSVLLCAL+CSLGLN+I++CAL
Sbjct: 20  RRLLLTPTTASPPSPEIHHNSSDLYTRNNSFDANIVMVLSVLLCALICSLGLNSIIRCAL 79

Query: 67  RCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 126
           RCSSL+A+ SG      LA   KGV+R  LK FPTV Y  +  KL G+D EC+ICLS+F 
Sbjct: 80  RCSSLVASESGATTSSRLA--NKGVKRKALKTFPTVNYSAD-LKLPGLDSECIICLSDFT 139

Query: 127 GGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAI 186
            GDRVR+LPKC HGFHV CIDKWLS+H+SCPKCR+CL D+C KI   G  +A   E    
Sbjct: 140 AGDRVRLLPKCNHGFHVRCIDKWLSAHSSCPKCRHCLVDTCQKIV--GCTQASSSE---- 199

Query: 187 DPPPPPPPGEEVVVNVVIAPVEREGLVCNYR 212
                PPP +E +++ +I PV+REG + +YR
Sbjct: 200 -----PPPVQETILS-IITPVDREGFIHSYR 215

[Close]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match: A0A061DIQ7_THECC (RING zinc finger protein OS=Theobroma cacao GN=TCM_001369 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 9.1e-49
Identity = 119/219 (54.34%), Postives = 144/219 (65.75%), Query Frame = 1 

Query: 5   NSRRLLL---------PAVTASPPV---SAQLRPGFGSFDMNVVMVLSVLLCALVCSLGL 64
           +SRRLLL          A  ASP     S+    G  SFD NVVMVLSVLLCAL+CSLGL
Sbjct: 18  HSRRLLLHTPPFETPTTAAPASPENNHNSSDPYTGNNSFDANVVMVLSVLLCALICSLGL 77

Query: 65  NAILKCALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGEC 124
           N+I++CALRC+ L+A+ SG      LA    GV+R  LK FPTV Y  +  KL G+D EC
Sbjct: 78  NSIIRCALRCTGLVASESGASTSARLA--NTGVKRKALKTFPTVNYSAD-LKLPGLDTEC 137

Query: 125 VICLSEFEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEA 184
           +ICLS+F  GDRVR+LPKC HGFHV CIDKWLSSH+SCPKCR+CL ++C KI  G SQ +
Sbjct: 138 IICLSDFTPGDRVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLLETCQKI-VGCSQAS 197

Query: 185 PDGEFIAIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYR 212
             G          PPP +E +  V IAPV+ EGL+ +YR
Sbjct: 198 SSG----------PPPVQETI--VTIAPVDPEGLIHSYR 220

[Close]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match: V4UNR8_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027222mg PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 115/212 (54.25%), Postives = 141/212 (66.51%), Query Frame = 1 

Query: 6   SRRLLLPAVTASPPVS------AQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA 65
           SRR LL   TA PPV       A++  G  +FD NVVMVLSVLLCAL+CSLGLN+I++C 
Sbjct: 12  SRRSLL---TAPPPVPGKSHDPAEVYTGNNTFDANVVMVLSVLLCALICSLGLNSIIRCV 71

Query: 66  LRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEF 125
           +RCSSL+A+ SG      +  + KG+++  LK FP V Y  E N L G+D ECVICLSEF
Sbjct: 72  VRCSSLVASRSGASNSAAILPN-KGIKQKALKTFPVVSYSAELN-LAGLDTECVICLSEF 131

Query: 126 EGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIA 185
             GDR+R+LPKC HGFHV CIDKWLSSH+SCPKCR+CL ++C KI  G SQ A   E   
Sbjct: 132 AAGDRLRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIETCQKI-IGCSQAASSSE--- 191

Query: 186 IDPPPPPPPGEEVVVNVVIAPVEREGLVCNYR 212
                 P   +E +  V I P+E EGL+ NYR
Sbjct: 192 -----NPVTAQETI--VTITPLEPEGLIRNYR 207

[Close]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 174.5 bits (441), Expect = 7.9e-44
Identity = 98/199 (49.25%), Postives = 126/199 (63.32%), Query Frame = 1 

Query: 6   SRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL 65
           SR+LL      SP  +     G  +FD NVVMVLSVLLCALVCSLGLN+I++CALRCS+L
Sbjct: 27  SRKLLFHTHDQSPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNL 86

Query: 66  LATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRV 125
           + + +GG    +   +  GV+R  LK F TV Y  E N L G+D EC ICLSEF   +RV
Sbjct: 87  VPSEAGGDNYPVRLTNT-GVKRKALKSFQTVSYSTELN-LPGLDTECAICLSEFVAEERV 146

Query: 126 RVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPPPP 185
           ++LP C+HGFHV CIDKWLSSH+SCP CR+CL  +C KIA      + +           
Sbjct: 147 KLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQTCEKIADCSQTSSLNS---------T 206

Query: 186 PPPGEEVVVNVVIAPVERE 205
            PP + +++   IAP+E E
Sbjct: 207 QPPQDSIILQ--IAPLEPE 212

[Close]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.0e-35
Identity = 90/222 (40.54%), Postives = 128/222 (57.66%), Query Frame = 1 

Query: 13  AVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSL------L 72
           AV  SP ++ +      +   NV+M+LS+L+C ++C LGL+ I++CALR S+       +
Sbjct: 41  AVAPSPLITHE-----NNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPV 100

Query: 73  ATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVR 132
            ++S   G        KG+++  L+ FP V Y  E N L G+D ECVICLS+F  G+++R
Sbjct: 101 PSLSSTRGSS-----NKGIKKKALRMFPVVSYSPEMN-LPGLDEECVICLSDFVSGEQLR 160

Query: 133 VLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQ------EAPDGEFIAI 192
           +LPKC HGFHV CIDKWL  H +CPKCRNCL ++C KI    SQ      E  +   + I
Sbjct: 161 LLPKCNHGFHVRCIDKWLQQHLTCPKCRNCLVETCQKILGDFSQADSVTAEPTEIVIVTI 220

Query: 193 DPPPP---------PPPGEEVVVNVVIAPVEREGLVCNYRKL 214
            P  P         P    E+V+ V+IAP+E EG V   R++
Sbjct: 221 VPLEPTEIVIVTIAPLEPTEIVI-VMIAPLEPEGRVNTIREI 250

[Close]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match: AT1G49210.1 (AT1G49210.1 RING/U-box superfamily protein)

HSP 1 Score: 142.5 bits (358), Expect = 3.3e-34
Identity = 88/210 (41.90%), Postives = 125/210 (59.52%), Query Frame = 1 

Query: 5   NSRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSS 64
           NS R+   AV  SP ++ +      +   NV+M+LSVL+C ++C LGL+ I++CA R SS
Sbjct: 35  NSLRVF--AVAPSPLITHE-----NNLKGNVLMLLSVLICGIICCLGLHYIIRCAFRRSS 94

Query: 65  --LLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGG 124
             +++     L     + + KG+++  L+ FP V Y +E N L GI  ECVICLS+F  G
Sbjct: 95  RFMISEPISSLSTPRSSSN-KGIKKKALRMFPVVSYSREMN-LPGIGEECVICLSDFVSG 154

Query: 125 DRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDP 184
           +++R+LPKC HGFHV CIDKWL  H +CPKCR+CL ++C KI          G+F   D 
Sbjct: 155 EQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCLVETCQKIL---------GDFSQADS 214

Query: 185 PPPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
               P  E V+V   I P+E EG V  +R+
Sbjct: 215 MASTPT-ESVIVR--IDPLEPEGRVNTFRE 223

[Close]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match: AT1G49200.1 (AT1G49200.1 RING/U-box superfamily protein)

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-34
Identity = 83/197 (42.13%), Postives = 117/197 (59.39%), Query Frame = 1 

Query: 13  AVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSS--LLATMS 72
           AV  SP ++ +      +   NV+M+LSVL+C ++C LGL+ I++CA R +S  +++   
Sbjct: 42  AVAPSPLITHE-----NNLSGNVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPI 101

Query: 73  GGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPK 132
            GL     + + KG+ +  L+ FP V Y  E N L G+  ECVICLS+F  G+++R+LPK
Sbjct: 102 AGLSTPCGSSN-KGINKKALRMFPVVSYSPEMN-LPGLGEECVICLSDFVSGEQIRMLPK 161

Query: 133 CYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPPPPPPPGE 192
           C+HGFHV CIDKWL  H +CPKCR+CL ++C KI          G+F   D     P   
Sbjct: 162 CHHGFHVRCIDKWLQQHLTCPKCRHCLVETCQKIL---------GDFSQADQVAATPTAS 219

Query: 193 EVVVNVVIAPVEREGLV 208
              V V IAP+E EG V
Sbjct: 222 ---VIVRIAPLEPEGRV 219

[Close]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match: AT3G18773.1 (AT3G18773.1 RING/U-box superfamily protein)

HSP 1 Score: 131.7 bits (330), Expect = 5.9e-31
Identity = 79/209 (37.80%), Postives = 117/209 (55.98%), Query Frame = 1 

Query: 6   SRRLLLPAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCA-LRCSS 65
           SR+LL     A     A + P   +   NV+M+LS+LLC ++CSLGL+ I++CA +R  S
Sbjct: 24  SRKLLQQIPFAHNAQQAHV-PDKNNLSGNVLMLLSILLCGIICSLGLHYIIRCAFIRSRS 83

Query: 66  LLATMSGGLGGGIL-AVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGD 125
            + +    +      +   KG+++  LK  P V Y  E N L G+  ECVICLS+F  G+
Sbjct: 84  FMISDPISIPSTPRDSSVNKGIKKKALKMLPVVNYSPEIN-LPGVGEECVICLSDFVAGE 143

Query: 126 RVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAIDPP 185
           ++RVLPKC HGFH+ CIDKWL+ H +CPKCR+CL D+C K+ +              D  
Sbjct: 144 QLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCLVDTCQKVLSD------------CDAA 203

Query: 186 PPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
                     +++ I+P+E E  V  +R+
Sbjct: 204 DQVAATATESIDIRISPLEPEARVATFRE 218

[Close]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match: gi|659080851|ref|XP_008441014.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.6e-89
Identity = 172/217 (79.26%), Postives = 181/217 (83.41%), Query Frame = 1 

Query: 1   MSITNSRRLLLPAVTA--SPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR LLP+ TA  SPP  AQ RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLLPSPTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+SGG GGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAP---DG 180
           FE GDRVRVLPKCYHGFHVHCIDKWLSSH SCPKCRNCLTD+CHKIAAG  QE P     
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPVTTAA 180

Query: 181 EFIAIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
                     PP  EEV VNVVIAPVEREG++ NYR+
Sbjct: 181 TAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRE 217

[Close]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match: gi|449461825|ref|XP_004148642.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 9.9e-89
Identity = 168/214 (78.50%), Postives = 180/214 (84.11%), Query Frame = 1 

Query: 1   MSITNSRRLLLPAVT--ASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKC 60
           MSI+NSRR L+P+ T  A+PP  AQ RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKC
Sbjct: 1   MSISNSRRFLIPSATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKC 60

Query: 61  ALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSE 120
           ALRCS+LLAT+SGG GGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL E
Sbjct: 61  ALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLE 120

Query: 121 FEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFI 180
           FE GDRVRVLPKCYHGFHVHCIDKWLSSH SCPKCRNCLTD+CHKI AG +QE       
Sbjct: 121 FEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHVTTAA 180

Query: 181 AIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYRK 213
                  PP  EEV VNVVIAPVEREG++ NYR+
Sbjct: 181 ESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRE 214

[Close]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match: gi|17016985|gb|AAL33552.1|AF436851_1 (RING-H2 zinc finger protein [Cucumis melo])

HSP 1 Score: 299.3 bits (765), Expect = 6.0e-78
Identity = 142/162 (87.65%), Postives = 146/162 (90.12%), Query Frame = 1 

Query: 12  PAVTASPPVSAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCALRCSSLLATMSG 71
           P   ASPP  AQ RPGFGSFDMNVVMVLSVLLCAL+CSLGLNAILKCALRCS+LLAT+SG
Sbjct: 6   PTAAASPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCSTLLATVSG 65

Query: 72  GLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFEGGDRVRVLPKC 131
           G GGG L VHPKGVRRNVLKKFPTVEY KEGNKLRGIDGECVICL EFE GDRVRVLPKC
Sbjct: 66  GRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGIDGECVICLLEFEAGDRVRVLPKC 125

Query: 132 YHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAP 174
           YHGFHVHCIDKWLSSH SCPKCRNCLTD+CHKIAAG  QE P
Sbjct: 126 YHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETP 167

[Close]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match: gi|823140945|ref|XP_012470295.1| (PREDICTED: RING-H2 finger protein ATL78-like [Gossypium raimondii])

HSP 1 Score: 216.5 bits (550), Expect = 5.1e-53
Identity = 118/211 (55.92%), Postives = 145/211 (68.72%), Query Frame = 1 

Query: 7   RRLLLPAVTASPPV------SAQLRPGFGSFDMNVVMVLSVLLCALVCSLGLNAILKCAL 66
           RRLLL   TASPP       S+ L     SFD N+VMVLSVLLCAL+CSLGLN+I++CAL
Sbjct: 20  RRLLLTPTTASPPSPEIHHNSSDLYTRNNSFDANIVMVLSVLLCALICSLGLNSIIRCAL 79

Query: 67  RCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGECVICLSEFE 126
           RCSSL+A+ SG      LA   KGV+R  LK FPTV Y  +  KL G+D EC+ICLS+F 
Sbjct: 80  RCSSLVASESGATTSSRLA--NKGVKRKALKTFPTVNYSAD-LKLPGLDSECIICLSDFT 139

Query: 127 GGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEAPDGEFIAI 186
            GDRVR+LPKC HGFHV CIDKWLS+H+SCPKCR+CL D+C KI   G  +A   E    
Sbjct: 140 AGDRVRLLPKCNHGFHVRCIDKWLSAHSSCPKCRHCLVDTCQKIV--GCTQASSSE---- 199

Query: 187 DPPPPPPPGEEVVVNVVIAPVEREGLVCNYR 212
                PPP +E +++ +I PV+REG + +YR
Sbjct: 200 -----PPPVQETILS-IITPVDREGFIHSYR 215

[Close]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match: gi|590708371|ref|XP_007048258.1| (RING zinc finger protein [Theobroma cacao])

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 119/219 (54.34%), Postives = 144/219 (65.75%), Query Frame = 1 

Query: 5   NSRRLLL---------PAVTASPPV---SAQLRPGFGSFDMNVVMVLSVLLCALVCSLGL 64
           +SRRLLL          A  ASP     S+    G  SFD NVVMVLSVLLCAL+CSLGL
Sbjct: 18  HSRRLLLHTPPFETPTTAAPASPENNHNSSDPYTGNNSFDANVVMVLSVLLCALICSLGL 77

Query: 65  NAILKCALRCSSLLATMSGGLGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGIDGEC 124
           N+I++CALRC+ L+A+ SG      LA    GV+R  LK FPTV Y  +  KL G+D EC
Sbjct: 78  NSIIRCALRCTGLVASESGASTSARLA--NTGVKRKALKTFPTVNYSAD-LKLPGLDTEC 137

Query: 125 VICLSEFEGGDRVRVLPKCYHGFHVHCIDKWLSSHNSCPKCRNCLTDSCHKIAAGGSQEA 184
           +ICLS+F  GDRVR+LPKC HGFHV CIDKWLSSH+SCPKCR+CL ++C KI  G SQ +
Sbjct: 138 IICLSDFTPGDRVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLLETCQKI-VGCSQAS 197

Query: 185 PDGEFIAIDPPPPPPPGEEVVVNVVIAPVEREGLVCNYR 212
             G          PPP +E +  V IAPV+ EGL+ +YR
Sbjct: 198 SSG----------PPPVQETI--VTIAPVDPEGLIHSYR 220

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g03320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL78_ARATH1.4e-4249.25RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL10_ARATH1.8e-3440.54RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1[more]
ATL76_ARATH5.9e-3341.90E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1[more]
ATL75_ARATH1.0e-3242.13RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1[more]
ATL77_ARATH1.0e-2937.80RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1[more]
BLAST of Cp4.1LG10g03320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF92_CUCSA6.9e-8978.50RING-H2 zinc finger protein OS=Cucumis sativus GN=Csa_6G484580 PE=4 SV=1[more]
Q8W550_CUCME4.2e-7887.65RING-H2 zinc finger protein (Fragment) OS=Cucumis melo PE=2 SV=1[more]
A0A0D2MKD6_GOSRA3.6e-5355.92Uncharacterized protein OS=Gossypium raimondii GN=B456_003G070100 PE=4 SV=1[more]
A0A061DIQ7_THECC9.1e-4954.34RING zinc finger protein OS=Theobroma cacao GN=TCM_001369 PE=4 SV=1[more]
V4UNR8_9ROSI1.2e-4854.25Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10027222mg PE=... [more]
BLAST of Cp4.1LG10g03320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49230.17.9e-4449.25 RING/U-box superfamily protein[more]
AT1G49220.11.0e-3540.54 RING/U-box superfamily protein[more]
AT1G49210.13.3e-3441.90 RING/U-box superfamily protein[more]
AT1G49200.15.7e-3442.13 RING/U-box superfamily protein[more]
AT3G18773.15.9e-3137.80 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG10g03320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080851|ref|XP_008441014.1|2.6e-8979.26PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo][more]
gi|449461825|ref|XP_004148642.1|9.9e-8978.50PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus][more]
gi|17016985|gb|AAL33552.1|AF436851_16.0e-7887.65RING-H2 zinc finger protein [Cucumis melo][more]
gi|823140945|ref|XP_012470295.1|5.1e-5355.92PREDICTED: RING-H2 finger protein ATL78-like [Gossypium raimondii][more]
gi|590708371|ref|XP_007048258.1|1.3e-4854.34RING zinc finger protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g03320.1Cp4.1LG10g03320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 111..154
score: 8.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 112..153
score: 5.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 112..154
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 110..156
score: 1.2
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 31..179
score: 1.7
NoneNo IPR availablePANTHERPTHR14155:SF106SUBFAMILY NOT NAMEDcoord: 31..179
score: 1.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 111..159
score: 1.41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g03320Cucsa.101150Cucumber (Gy14) v1cgycpeB0211
Cp4.1LG10g03320Cucsa.250040Cucumber (Gy14) v1cgycpeB0663
Cp4.1LG10g03320CmaCh03G010780Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g03320CmaCh07G007840Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g03320CmoCh02G006210Cucurbita moschata (Rifu)cmocpeB548
Cp4.1LG10g03320CmoCh07G008080Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g03320Cla008454Watermelon (97103) v1cpewmB075
Cp4.1LG10g03320Cla007793Watermelon (97103) v1cpewmB093
Cp4.1LG10g03320Csa6G484580Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g03320MELO3C008033Melon (DHL92) v3.5.1cpemeB069
Cp4.1LG10g03320ClCG01G015650Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g03320ClCG02G000670Watermelon (Charleston Gray)cpewcgB066
Cp4.1LG10g03320CSPI02G15540Wild cucumber (PI 183967)cpecpiB057
Cp4.1LG10g03320CSPI06G26710Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g03320Lsi01G011310Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g03320MELO3C008033.2Melon (DHL92) v3.6.1cpemedB092
Cp4.1LG10g03320CsaV3_6G041880Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g03320Bhi03G001069Wax gourdcpewgoB0087
Cp4.1LG10g03320Bhi10G001909Wax gourdcpewgoB0083
Cp4.1LG10g03320CsGy6G026120Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g03320CsGy2G015510Cucumber (Gy14) v2cgybcpeB156
Cp4.1LG10g03320Carg05293Silver-seed gourdcarcpeB1128
Cp4.1LG10g03320Carg11683Silver-seed gourdcarcpeB1471
Cp4.1LG10g03320Carg10552Silver-seed gourdcarcpeB0337
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG10g03320Cp4.1LG19g12160Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g03320Cucurbita pepo (Zucchini)cpecpeB098
Cp4.1LG10g03320Cucurbita maxima (Rimu)cmacpeB599
Cp4.1LG10g03320Cucurbita moschata (Rifu)cmocpeB547
Cp4.1LG10g03320Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g03320Silver-seed gourdcarcpeB1470