CmoCh07G008080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G008080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRing finger protein, putative
LocationCmo_Chr07 : 3726927 .. 3727583 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTTCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACCTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCTGTGGAACGGGAAGGTTTGAGGTGTAGCTATAGAGACAGTGGTAGATGA

mRNA sequence

ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTTCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACCTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCTGTGGAACGGGAAGGTTTGAGGTGTAGCTATAGAGACAGTGGTAGATGA

Coding sequence (CDS)

ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTTCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACCTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCTGTGGAACGGGAAGGTTTGAGGTGTAGCTATAGAGACAGTGGTAGATGA
Homology
[Close]
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.5e-40
Identity = 90/187 (48.13%), Postives = 118/187 (63.10%), Query Frame = 1 

Query: 21  TPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAILKCALRCSTLLASASARHGGN 80
           +P+  P P  G  +FD NVVMVLSVLLCALV SLGLN+I++CALRCS L+ S +      
Sbjct: 38  SPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYP 97

Query: 81  IAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGF 140
           + +   GV R  LK F TV YS + N      +D EC ICL++F   +RV++LP C+HGF
Sbjct: 98  VRLTNTGVKRKALKSFQTVSYSTELNL---PGLDTECAICLSEFVAEERVKLLPTCHHGF 157

Query: 141 HVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVG 200
           HV CIDKWLSSH+SCP CR+CL  T  K+ A C      +S+       PP + +++   
Sbjct: 158 HVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQTSSLNSTQ------PPQDSIILQ-- 212

Query: 201 IAPVERE 208
           IAP+E E
Sbjct: 218 IAPLEPE 212

[Close]
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match: ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-31
Identity = 80/196 (40.82%), Postives = 112/196 (57.14%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALRCSTL------LASASARHGGNIAIHPKGVGRN 97
           NV+M+LS+L+C ++  LGL+ I++CALR ST       + S S+  G +     KG+ + 
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS----NKGIKKK 116

Query: 98  TLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSS 157
            L+ FP V YS + N      +D ECVICL+DF  G+++R+LPKC HGFHV CIDKWL  
Sbjct: 117 ALRMFPVVSYSPEMNL---PGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 176

Query: 158 HTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPP--------PPPPSEEVVVNVG--- 209
           H +CPKCRNCL +T +K+    G   +  S +  P         P  P+E V+V +    
Sbjct: 177 HLTCPKCRNCLVETCQKI---LGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLE 236

[Close]
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match: ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 77/186 (41.40%), Postives = 111/186 (59.68%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALRCST-------LLASASARHGGNIAIHPKGVGR 97
           NV+M+LSVL+C ++  LGL+ I++CA R S+       + + ++ R   N     KG+ +
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSN-----KGIKK 116

Query: 98  NTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLS 157
             L+ FP V YS++ N   GI    ECVICL+DF  G+++R+LPKC HGFHV CIDKWL 
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGE--ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 176

Query: 158 SHTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLR 217
            H +CPKCR+CL +T +K        + G  S        P+E V+V   I P+E EG  
Sbjct: 177 HHLTCPKCRHCLVETCQK--------ILGDFSQADSMASTPTESVIVR--IDPLEPEGRV 224

[Close]
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match: ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCA-LRCSTLLAS--ASARHGGNIAIHPKGVGRNTLK 97
           NV+M+LS+LLC ++ SLGL+ I++CA +R  + + S   S       +   KG+ +  LK
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 98  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 157
             P V YS + N   G+    ECVICL+DF  G+++R+LPKC HGFH+ CIDKWL+ H +
Sbjct: 111 MLPVVNYSPEIN-LPGVGE--ECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMT 170

Query: 158 CPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 217
           CPKCR+CL DT +KV + C +A + ++++             +++ I+P+E E    ++R
Sbjct: 171 CPKCRHCLVDTCQKVLSDCDAADQVAATATES----------IDIRISPLEPEARVATFR 219

[Close]
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match: ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALR--CSTLLASASARHGGNIAIHPKGVGRNTLKK 97
           NV+M+LSVL+C ++  LGL+ I++CA R   S +++   A          KG+ +  L+ 
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRM 117

Query: 98  FPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSC 157
           FP V YS + N      +  ECVICL+DF  G+++R+LPKC+HGFHV CIDKWL  H +C
Sbjct: 118 FPVVSYSPEMNL---PGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTC 177

Query: 158 PKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREG 209
           PKCR+CL +T +K        + G  S        P+  V+V   IAP+E EG
Sbjct: 178 PKCRHCLVETCQK--------ILGDFSQADQVAATPTASVIVR--IAPLEPEG 217

[Close]
BLAST of CmoCh07G008080 vs. TrEMBL
Match: A0A0A0KF92_CUCSA (RING-H2 zinc finger protein OS=Cucumis sativus GN=Csa_6G484580 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.5e-77
Identity = 155/219 (70.78%), Postives = 175/219 (79.91%), Query Frame = 1 

Query: 1   MSISITRRFLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAIL 60
           MSIS +RRFL+P  +AT  ATP    QPRPGFGSFD+NVVMVLSVLLCAL+ SLGLNAIL
Sbjct: 1   MSISNSRRFLIP--SATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAIL 60

Query: 61  KCALRCSTLLASAS-ARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVI 120
           KCALRCSTLLA+ S  R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DGECVI
Sbjct: 61  KCALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DGECVI 120

Query: 121 CLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG--SAV 180
           CL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGC   + V
Sbjct: 121 CLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHV 180

Query: 181 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYRDS 217
             ++ S     PP +EEV VNV IAPVEREG+  +YR+S
Sbjct: 181 TTAAESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRES 215

[Close]
BLAST of CmoCh07G008080 vs. TrEMBL
Match: Q8W550_CUCME (RING-H2 zinc finger protein (Fragment) OS=Cucumis melo PE=2 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 6.8e-67
Identity = 129/167 (77.25%), Postives = 141/167 (84.43%), Query Frame = 1 

Query: 9   FLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAILKCALRCST 68
           FLLP+ TA A  +P    QPRPGFGSFD+NVVMVLSVLLCAL+ SLGLNAILKCALRCST
Sbjct: 1   FLLPSPTAAA--SPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCST 60

Query: 69  LLASASA-RHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPG 128
           LLA+ S  R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DGECVICL +FE G
Sbjct: 61  LLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DGECVICLLEFEAG 120

Query: 129 DRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG 175
           DRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGCG
Sbjct: 121 DRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCG 163

[Close]
BLAST of CmoCh07G008080 vs. TrEMBL
Match: A0A061DIQ7_THECC (RING zinc finger protein OS=Theobroma cacao GN=TCM_001369 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 118/217 (54.38%), Postives = 140/217 (64.52%), Query Frame = 1 

Query: 6   TRRFLL--PTATATAVATPSSPPQ------PRPGFGSFDLNVVMVLSVLLCALVFSLGLN 65
           +RR LL  P       A P+SP        P  G  SFD NVVMVLSVLLCAL+ SLGLN
Sbjct: 19  SRRLLLHTPPFETPTTAAPASPENNHNSSDPYTGNNSFDANVVMVLSVLLCALICSLGLN 78

Query: 66  AILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGEC 125
           +I++CALRC+ L+AS S     +  +   GV R  LK FPTV YS    K  G+  D EC
Sbjct: 79  SIIRCALRCTGLVASESGA-STSARLANTGVKRKALKTFPTVNYSADL-KLPGL--DTEC 138

Query: 126 VICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAV 185
           +ICL+DF PGDRVR+LPKC HGFHV CIDKWLSSH+SCPKCR+CL +T +K+  GC  A 
Sbjct: 139 IICLSDFTPGDRVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLLETCQKI-VGCSQA- 198

Query: 186 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 215
               SS G   PPP +E +V   IAPV+ EGL  SYR
Sbjct: 199 ----SSSG---PPPVQETIVT--IAPVDPEGLIHSYR 220

[Close]
BLAST of CmoCh07G008080 vs. TrEMBL
Match: A0A0D2MKD6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G070100 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.6e-46
Identity = 114/217 (52.53%), Postives = 139/217 (64.06%), Query Frame = 1 

Query: 7   RRFLLPTATATAVATPSSPPQPRPGFGS---------FDLNVVMVLSVLLCALVFSLGLN 66
           RR LL   TA       SPP P     S         FD N+VMVLSVLLCAL+ SLGLN
Sbjct: 20  RRLLLTPTTA-------SPPSPEIHHNSSDLYTRNNSFDANIVMVLSVLLCALICSLGLN 79

Query: 67  AILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGEC 126
           +I++CALRCS+L+AS S     +  +  KGV R  LK FPTV YS    K  G+  D EC
Sbjct: 80  SIIRCALRCSSLVASESGATTSS-RLANKGVKRKALKTFPTVNYSADL-KLPGL--DSEC 139

Query: 127 VICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAV 186
           +ICL+DF  GDRVR+LPKC HGFHV CIDKWLS+H+SCPKCR+CL DT +K+  GC    
Sbjct: 140 IICLSDFTAGDRVRLLPKCNHGFHVRCIDKWLSAHSSCPKCRHCLVDTCQKI-VGC---T 199

Query: 187 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 215
           + SSS      PPP +E ++++ I PV+REG   SYR
Sbjct: 200 QASSSE-----PPPVQETILSI-ITPVDREGFIHSYR 215

[Close]
BLAST of CmoCh07G008080 vs. TrEMBL
Match: U5FE83_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s02620g PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.5e-45
Identity = 112/219 (51.14%), Postives = 142/219 (64.84%), Query Frame = 1 

Query: 6   TRRFLL--PTATATAVATP-----SSPPQPRPGFGS-FDLNVVMVLSVLLCALVFSLGLN 65
           +RR LL  P   +T  ATP     S+P +P  G GS FD NVVMVLSVLLCAL+ SLGLN
Sbjct: 20  SRRLLLHNPLYQSTNTATPPAPGNSAPSEPSTGTGSSFDANVVMVLSVLLCALICSLGLN 79

Query: 66  AILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGEC 125
           +I++CALRCS + AS SA +    + +  GV R  LK FP V YS   N      +D EC
Sbjct: 80  SIIRCALRCSNIAASESAANPSTQSANT-GVNRRALKSFPVVNYSSDLNL---PGLDTEC 139

Query: 126 VICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAV 185
           VICL++F PG+RVR+LPKC+HGFHV CIDKWLSSH+SCP CR+CL +T +K+  GC  A 
Sbjct: 140 VICLSEFTPGERVRLLPKCHHGFHVKCIDKWLSSHSSCPTCRHCLIETCQKI-IGCSQAS 199

Query: 186 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYRDS 217
              +S        P +E +V+  I P+E EGL   YR++
Sbjct: 200 TSGTSL-------PVQETIVS--IMPLEPEGLIRDYREN 224

[Close]
BLAST of CmoCh07G008080 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-41
Identity = 90/187 (48.13%), Postives = 118/187 (63.10%), Query Frame = 1 

Query: 21  TPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAILKCALRCSTLLASASARHGGN 80
           +P+  P P  G  +FD NVVMVLSVLLCALV SLGLN+I++CALRCS L+ S +      
Sbjct: 38  SPTPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYP 97

Query: 81  IAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGF 140
           + +   GV R  LK F TV YS + N      +D EC ICL++F   +RV++LP C+HGF
Sbjct: 98  VRLTNTGVKRKALKSFQTVSYSTELNL---PGLDTECAICLSEFVAEERVKLLPTCHHGF 157

Query: 141 HVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVG 200
           HV CIDKWLSSH+SCP CR+CL  T  K+ A C      +S+       PP + +++   
Sbjct: 158 HVRCIDKWLSSHSSCPTCRHCLIQTCEKI-ADCSQTSSLNSTQ------PPQDSIILQ-- 212

Query: 201 IAPVERE 208
           IAP+E E
Sbjct: 218 IAPLEPE 212

[Close]
BLAST of CmoCh07G008080 vs. TAIR10
Match: AT1G49220.1 (AT1G49220.1 RING/U-box superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 4.9e-32
Identity = 80/196 (40.82%), Postives = 112/196 (57.14%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALRCSTL------LASASARHGGNIAIHPKGVGRN 97
           NV+M+LS+L+C ++  LGL+ I++CALR ST       + S S+  G +     KG+ + 
Sbjct: 57  NVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSS----NKGIKKK 116

Query: 98  TLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSS 157
            L+ FP V YS + N      +D ECVICL+DF  G+++R+LPKC HGFHV CIDKWL  
Sbjct: 117 ALRMFPVVSYSPEMNL---PGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQ 176

Query: 158 HTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPP--------PPPPSEEVVVNVG--- 209
           H +CPKCRNCL +T +K+    G   +  S +  P         P  P+E V+V +    
Sbjct: 177 HLTCPKCRNCLVETCQKI---LGDFSQADSVTAEPTEIVIVTIVPLEPTEIVIVTIAPLE 236

[Close]
BLAST of CmoCh07G008080 vs. TAIR10
Match: AT1G49210.1 (AT1G49210.1 RING/U-box superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-31
Identity = 77/186 (41.40%), Postives = 111/186 (59.68%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALRCST-------LLASASARHGGNIAIHPKGVGR 97
           NV+M+LSVL+C ++  LGL+ I++CA R S+       + + ++ R   N     KG+ +
Sbjct: 57  NVLMLLSVLICGIICCLGLHYIIRCAFRRSSRFMISEPISSLSTPRSSSN-----KGIKK 116

Query: 98  NTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLS 157
             L+ FP V YS++ N   GI    ECVICL+DF  G+++R+LPKC HGFHV CIDKWL 
Sbjct: 117 KALRMFPVVSYSREMN-LPGIGE--ECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 176

Query: 158 SHTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLR 217
            H +CPKCR+CL +T +K        + G  S        P+E V+V   I P+E EG  
Sbjct: 177 HHLTCPKCRHCLVETCQK--------ILGDFSQADSMASTPTESVIVR--IDPLEPEGRV 224

[Close]
BLAST of CmoCh07G008080 vs. TAIR10
Match: AT3G18773.1 (AT3G18773.1 RING/U-box superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-31
Identity = 72/182 (39.56%), Postives = 113/182 (62.09%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCA-LRCSTLLAS--ASARHGGNIAIHPKGVGRNTLK 97
           NV+M+LS+LLC ++ SLGL+ I++CA +R  + + S   S       +   KG+ +  LK
Sbjct: 51  NVLMLLSILLCGIICSLGLHYIIRCAFIRSRSFMISDPISIPSTPRDSSVNKGIKKKALK 110

Query: 98  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 157
             P V YS + N   G+    ECVICL+DF  G+++R+LPKC HGFH+ CIDKWL+ H +
Sbjct: 111 MLPVVNYSPEIN-LPGVGE--ECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMT 170

Query: 158 CPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 217
           CPKCR+CL DT +KV + C +A + ++++             +++ I+P+E E    ++R
Sbjct: 171 CPKCRHCLVDTCQKVLSDCDAADQVAATATES----------IDIRISPLEPEARVATFR 219

[Close]
BLAST of CmoCh07G008080 vs. TAIR10
Match: AT1G49200.1 (AT1G49200.1 RING/U-box superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 7.0e-31
Identity = 72/173 (41.62%), Postives = 102/173 (58.96%), Query Frame = 1 

Query: 38  NVVMVLSVLLCALVFSLGLNAILKCALR--CSTLLASASARHGGNIAIHPKGVGRNTLKK 97
           NV+M+LSVL+C ++  LGL+ I++CA R   S +++   A          KG+ +  L+ 
Sbjct: 58  NVLMLLSVLICGIICCLGLHYIIRCAFRRTSSFMISEPIAGLSTPCGSSNKGINKKALRM 117

Query: 98  FPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSC 157
           FP V YS + N      +  ECVICL+DF  G+++R+LPKC+HGFHV CIDKWL  H +C
Sbjct: 118 FPVVSYSPEMNL---PGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTC 177

Query: 158 PKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREG 209
           PKCR+CL +T +K        + G  S        P+  V+V   IAP+E EG
Sbjct: 178 PKCRHCLVETCQK--------ILGDFSQADQVAATPTASVIVR--IAPLEPEG 217

[Close]
BLAST of CmoCh07G008080 vs. NCBI nr
Match: gi|659080851|ref|XP_008441014.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 159/226 (70.35%), Postives = 177/226 (78.32%), Query Frame = 1 

Query: 1   MSISITRRFLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAIL 60
           MSIS +RRFLLP+ TA A  +P    QPRPGFGSFD+NVVMVLSVLLCAL+ SLGLNAIL
Sbjct: 1   MSISNSRRFLLPSPTAAA--SPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAIL 60

Query: 61  KCALRCSTLLASASA-RHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVI 120
           KCALRCSTLLA+ S  R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DGECVI
Sbjct: 61  KCALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DGECVI 120

Query: 121 CLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG----- 180
           CL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGCG     
Sbjct: 121 CLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQETPV 180

Query: 181 ----SAVEGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYRDS 217
               +A E SSS      PP +EEV VNV IAPVEREG+  +YR+S
Sbjct: 181 TTAATAAESSSS----VEPPRAEEVEVNVVIAPVEREGMINNYRES 218

[Close]
BLAST of CmoCh07G008080 vs. NCBI nr
Match: gi|449461825|ref|XP_004148642.1| (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 2.1e-77
Identity = 155/219 (70.78%), Postives = 175/219 (79.91%), Query Frame = 1 

Query: 1   MSISITRRFLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAIL 60
           MSIS +RRFL+P  +AT  ATP    QPRPGFGSFD+NVVMVLSVLLCAL+ SLGLNAIL
Sbjct: 1   MSISNSRRFLIP--SATVAATPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAIL 60

Query: 61  KCALRCSTLLASAS-ARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVI 120
           KCALRCSTLLA+ S  R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DGECVI
Sbjct: 61  KCALRCSTLLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DGECVI 120

Query: 121 CLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG--SAV 180
           CL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGC   + V
Sbjct: 121 CLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQETHV 180

Query: 181 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYRDS 217
             ++ S     PP +EEV VNV IAPVEREG+  +YR+S
Sbjct: 181 TTAAESSSSVEPPRAEEVGVNVVIAPVEREGMINNYRES 215

[Close]
BLAST of CmoCh07G008080 vs. NCBI nr
Match: gi|17016985|gb|AAL33552.1|AF436851_1 (RING-H2 zinc finger protein [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 9.8e-67
Identity = 129/167 (77.25%), Postives = 141/167 (84.43%), Query Frame = 1 

Query: 9   FLLPTATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVFSLGLNAILKCALRCST 68
           FLLP+ TA A  +P    QPRPGFGSFD+NVVMVLSVLLCAL+ SLGLNAILKCALRCST
Sbjct: 1   FLLPSPTAAA--SPPELAQPRPGFGSFDMNVVMVLSVLLCALICSLGLNAILKCALRCST 60

Query: 69  LLASASA-RHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPG 128
           LLA+ S  R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DGECVICL +FE G
Sbjct: 61  LLATVSGGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DGECVICLLEFEAG 120

Query: 129 DRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG 175
           DRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGCG
Sbjct: 121 DRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCG 163

[Close]
BLAST of CmoCh07G008080 vs. NCBI nr
Match: gi|590708371|ref|XP_007048258.1| (RING zinc finger protein [Theobroma cacao])

HSP 1 Score: 194.5 bits (493), Expect = 1.9e-46
Identity = 118/217 (54.38%), Postives = 140/217 (64.52%), Query Frame = 1 

Query: 6   TRRFLL--PTATATAVATPSSPPQ------PRPGFGSFDLNVVMVLSVLLCALVFSLGLN 65
           +RR LL  P       A P+SP        P  G  SFD NVVMVLSVLLCAL+ SLGLN
Sbjct: 19  SRRLLLHTPPFETPTTAAPASPENNHNSSDPYTGNNSFDANVVMVLSVLLCALICSLGLN 78

Query: 66  AILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGEC 125
           +I++CALRC+ L+AS S     +  +   GV R  LK FPTV YS    K  G+  D EC
Sbjct: 79  SIIRCALRCTGLVASESGA-STSARLANTGVKRKALKTFPTVNYSADL-KLPGL--DTEC 138

Query: 126 VICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAV 185
           +ICL+DF PGDRVR+LPKC HGFHV CIDKWLSSH+SCPKCR+CL +T +K+  GC  A 
Sbjct: 139 IICLSDFTPGDRVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRHCLLETCQKI-VGCSQA- 198

Query: 186 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 215
               SS G   PPP +E +V   IAPV+ EGL  SYR
Sbjct: 199 ----SSSG---PPPVQETIVT--IAPVDPEGLIHSYR 220

[Close]
BLAST of CmoCh07G008080 vs. NCBI nr
Match: gi|823140945|ref|XP_012470295.1| (PREDICTED: RING-H2 finger protein ATL78-like [Gossypium raimondii])

HSP 1 Score: 192.2 bits (487), Expect = 9.5e-46
Identity = 114/217 (52.53%), Postives = 139/217 (64.06%), Query Frame = 1 

Query: 7   RRFLLPTATATAVATPSSPPQPRPGFGS---------FDLNVVMVLSVLLCALVFSLGLN 66
           RR LL   TA       SPP P     S         FD N+VMVLSVLLCAL+ SLGLN
Sbjct: 20  RRLLLTPTTA-------SPPSPEIHHNSSDLYTRNNSFDANIVMVLSVLLCALICSLGLN 79

Query: 67  AILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGEC 126
           +I++CALRCS+L+AS S     +  +  KGV R  LK FPTV YS    K  G+  D EC
Sbjct: 80  SIIRCALRCSSLVASESGATTSS-RLANKGVKRKALKTFPTVNYSADL-KLPGL--DSEC 139

Query: 127 VICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAV 186
           +ICL+DF  GDRVR+LPKC HGFHV CIDKWLS+H+SCPKCR+CL DT +K+  GC    
Sbjct: 140 IICLSDFTAGDRVRLLPKCNHGFHVRCIDKWLSAHSSCPKCRHCLVDTCQKI-VGC---T 199

Query: 187 EGSSSSVGPPPPPPSEEVVVNVGIAPVEREGLRCSYR 215
           + SSS      PPP +E ++++ I PV+REG   SYR
Sbjct: 200 QASSSE-----PPPVQETILSI-ITPVDREGFIHSYR 215

The following BLAST results are available for this feature:
BLAST of CmoCh07G008080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL78_ARATH3.5e-4048.13RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL10_ARATH8.6e-3140.82RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2 SV=1[more]
ATL76_ARATH3.3e-3041.40E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76 PE=1 SV=1[more]
ATL77_ARATH1.2e-2939.56RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2 SV=1[more]
ATL75_ARATH1.2e-2941.62RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2 SV=1[more]
BLAST of CmoCh07G008080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KF92_CUCSA1.5e-7770.78RING-H2 zinc finger protein OS=Cucumis sativus GN=Csa_6G484580 PE=4 SV=1[more]
Q8W550_CUCME6.8e-6777.25RING-H2 zinc finger protein (Fragment) OS=Cucumis melo PE=2 SV=1[more]
A0A061DIQ7_THECC1.3e-4654.38RING zinc finger protein OS=Theobroma cacao GN=TCM_001369 PE=4 SV=1[more]
A0A0D2MKD6_GOSRA6.6e-4652.53Uncharacterized protein OS=Gossypium raimondii GN=B456_003G070100 PE=4 SV=1[more]
U5FE83_POPTR1.5e-4551.14Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0019s02620g PE=4 SV=1[more]
BLAST of CmoCh07G008080 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49230.12.0e-4148.13 RING/U-box superfamily protein[more]
AT1G49220.14.9e-3240.82 RING/U-box superfamily protein[more]
AT1G49210.11.9e-3141.40 RING/U-box superfamily protein[more]
AT3G18773.17.0e-3139.56 RING/U-box superfamily protein[more]
AT1G49200.17.0e-3141.62 RING/U-box superfamily protein[more]
BLAST of CmoCh07G008080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659080851|ref|XP_008441014.1|1.2e-7770.35PREDICTED: RING-H2 finger protein ATL78-like [Cucumis melo][more]
gi|449461825|ref|XP_004148642.1|2.1e-7770.78PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus][more]
gi|17016985|gb|AAL33552.1|AF436851_19.8e-6777.25RING-H2 zinc finger protein [Cucumis melo][more]
gi|590708371|ref|XP_007048258.1|1.9e-4654.38RING zinc finger protein [Theobroma cacao][more]
gi|823140945|ref|XP_012470295.1|9.5e-4652.53PREDICTED: RING-H2 finger protein ATL78-like [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G008080.1CmoCh07G008080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 116..159
score: 3.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 117..158
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 117..159
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 114..160
score: 1.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 7..186
score: 2.1
NoneNo IPR availablePANTHERPTHR14155:SF106SUBFAMILY NOT NAMEDcoord: 7..186
score: 2.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 116..163
score: 1.16