Carg05293 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05293
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RING-H2 finger protein ATL78
Location	Cucurbita_argyrosperma_scaffold_010 : 989620 .. 990282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCACCGCCACCGCTGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTGCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACTTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCGGTGGAACGGGAAGGTCTGACGTGTAGCTATAGAGACAGTAGTAGATGA

mRNA sequence

ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCACCGCCACCGCTGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTGCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACTTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCGGTGGAACGGGAAGGTCTGACGTGTAGCTATAGAGACAGTAGTAGATGA

Coding sequence (CDS)

ATGTCTATCTCCATTACAAGAAGGTTCCTCCTCCCCACCGCCACCGCCACCGCCACCGCCACCGCTGTCGCCACTCCGTCTTCGCCACCGCAGCCCCGCCCTGGGTTCGGTAGCTTCGACTTGAACGTTGTAATGGTCCTATCCGTCCTCCTCTGCGCTCTAGTTTGCTCTTTGGGTCTCAACGCAATCCTCAAATGCGCCTTGCGGTGCTCCACTTTGCTGGCCTCCGCGTCGGCTCGCCACGGCGGGAATATAGCGATCCACCCGAAAGGCGTTGGACGAAATACGTTAAAGAAATTCCCGACGGTGGAGTACTCAAAACAGAGCAATAAATTCAGGGGAATCGCAATGGATGGGGAGTGCGTGATTTGCTTGGCGGATTTCGAGCCGGGCGATCGGGTTCGTATTTTGCCCAAATGCTACCATGGGTTCCATGTTCATTGCATCGATAAGTGGCTGAGTTCCCACACTTCTTGCCCCAAGTGCCGTAATTGCCTCTCTGATACTTCCCGGAAGGTCGACGCCGGTTGTGGGTCAGCGGTGGAGGGGAGTTCGTCCTCTGTTGGGCCGCCGCCGCCCTCGGAGGAGGTGGTGGTGAATGTTGGTATTGCTCCGGTGGAACGGGAAGGTCTGACGTGTAGCTATAGAGACAGTAGTAGATGA

Protein sequence

MSISITRRFLLPTATATATATAVATPSSPPQPRPGFGSFDLNVVMVLSVLLCALVCSLGLNAILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSSSSVGPPPPSEEVVVNVGIAPVEREGLTCSYRDSSR

Homology

[Close]

BLAST of Carg05293 vs. NCBI nr
Match: XP_023518448.1 (RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 177/220 (80.45%), Postives = 182/220 (82.73%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLSVXXXXXXXXXXX 60
           MSIS +RRFLLP+                         FD+NVVMVLS XXXXXXXXXXX
Sbjct: 1   MSISTSRRFLLPS----ATATAVATPSSLPQPRPGFGSFDMNVVMVLSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGE 120
           XXXXXXXXXXXXLLASASARHGGN+AIHPKGVGRN LKKFPTVEYSKQSNKFRGIAMDGE
Sbjct: 61  XXXXXXXXXXXXLLASASARHGGNLAIHPKGVGRNILKKFPTVEYSKQSNKFRGIAMDGE 120

Query: 121 CVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA 180
           CVICLADFEPGDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA
Sbjct: 121 CVICLADFEPGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA 180

Query: 181 VEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDSSR 221
           VEGS     XXXX     VNVGIAPVEREGLTCSYRDSSR
Sbjct: 181 VEGSSSSVGXXXXSEEVLVNVGIAPVEREGLTCSYRDSSR 216

[Close]

BLAST of Carg05293 vs. NCBI nr
Match: XP_022963109.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 186/222 (83.78%), Postives = 186/222 (83.78%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLSVXXXXXXXXXXX 60
           MSISITRRFLLPT     XXXXXXXXXXXXXXXXXX  FDLNVVMVLSV           
Sbjct: 1   MSISITRRFLLPT----AXXXXXXXXXXXXXXXXXXGSFDLNVVMVLSVLLCALVFSLGL 60

Query: 61  XXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGE 120
                       LLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGE
Sbjct: 61  NAILKCALRCSTLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDGE 120

Query: 121 CVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA 180
           CVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA
Sbjct: 121 CVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCGSA 180

Query: 181 VEG--SXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDSSR 221
           VEG   XXXXXXXXXXXXXX NVGIAPVEREGL CSYRDS R
Sbjct: 181 VEGXXXXXXXXXXXXXXXXXXNVGIAPVEREGLRCSYRDSGR 218

[Close]

BLAST of Carg05293 vs. NCBI nr
Match: XP_008441014.1 (PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 4.0e-48
Identity = 135/226 (59.73%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLS-VXXXXXXXXXX 60
           MSIS +RRFLLP+                         FD+NVVMVLS  XXXXXXXXXX
Sbjct: 1   MSISNSRRFLLPS------PTAAASPPELAQPRPGFGSFDMNVVMVLSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDG 120
           XXXXXXXXXXXXX       R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DG 120

Query: 121 ECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG- 180
           ECVICL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGCG 
Sbjct: 121 ECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQ 180

Query: 181 ------SAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDS 219
                 +A                  VNV IAPVEREG+  +YR+S
Sbjct: 181 ETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRES 218

[Close]

BLAST of Carg05293 vs. NCBI nr
Match: XP_004148642.1 (PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus] >KGN48380.1 RING-H2 zinc finger protein [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 2.6e-47
Identity = 135/225 (60.00%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLS-VXXXXXXXXXX 60
           MSIS +RRFL+P+                         FD+NVVMVLS  XXXXXXXXXX
Sbjct: 1   MSISNSRRFLIPS------ATVAATPPELAQPRPGFGSFDMNVVMVLSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDG 120
           XXXXXXXXXXXXX       R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DG 120

Query: 121 ECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG- 180
           ECVICL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGC  
Sbjct: 121 ECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQ 180

Query: 181 -----SAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDS 219
                +A E S              VNV IAPVEREG+  +YR+S
Sbjct: 181 ETHVTTAAESS--SSVEPPRAEEVGVNVVIAPVEREGMINNYRES 215

[Close]

BLAST of Carg05293 vs. NCBI nr
Match: XP_022977833.1 (RING-H2 finger protein ATL78-like [Cucurbita maxima])

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-42
Identity = 142/223 (63.68%), Postives = 156/223 (69.96%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLSVXXXXXXXXXXX 60
           MSI+ +RR LLP                          FD+NVVMVLSVXXXXXXXXXXX
Sbjct: 1   MSITNSRRLLLPA--------VTASPPVSVQLRPGFGSFDMNVVMVLSVXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXLLASAS-ARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDG 120
           XXXXXXXXXXX LLA+ S  R GG +A+HPKGV RN LKKFPTVEY K+ NK RGI  DG
Sbjct: 61  XXXXXXXXXXXSLLATMSEGRGGGILAVHPKGVRRNVLKKFPTVEYPKEGNKLRGI--DG 120

Query: 121 ECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDA---- 180
           ECVICL++FE GDRVR+LPKC+HGFHVHCIDKWLSSH SCPKCRNCL +T  K+ A    
Sbjct: 121 ECVICLSEFEGGDRVRVLPKCFHGFHVHCIDKWLSSHNSCPKCRNCL-NTCHKIAAXXXX 180

Query: 181 --GCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYR 217
                      XXXXXXXXXXXXXX    IAPVEREGL C+YR
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAPVEREGLVCNYR 212

[Close]

BLAST of Carg05293 vs. TAIR10
Match: AT3G18773.1 (RING/U-box superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-26
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  LK  P V YS + N   G+    ECVICL+DF  G+++R+LPKC HGFH+ CI
Sbjct: 102 KGIKKKALKMLPVVNYSPEIN-LPGVG--EECVICLSDFVAGEQLRVLPKCNHGFHLRCI 161

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL+ H +CPKCR+CL DT +KV + C +A +                +++ I+P+E E
Sbjct: 162 DKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQ--------VAATATESIDIRISPLEPE 220

Query: 210 GLTCSYRDSS 220
               ++R+SS
Sbjct: 222 ARVATFRESS 220

[Close]

BLAST of Carg05293 vs. TAIR10
Match: AT1G49200.1 (RING/U-box superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-26
Identity = 56/130 (43.08%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS + N      +  ECVICL+DF  G+++R+LPKC+HGFHV CI
Sbjct: 108 KGINKKALRMFPVVSYSPEMNL---PGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCI 167

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL  H +CPKCR+CL +T +K        + G               V V IAP+E E
Sbjct: 168 DKWLQQHLTCPKCRHCLVETCQK--------ILGDFSQADQVAATPTASVIVRIAPLEPE 226

Query: 210 GLTCSYRDSS 220
           G     R+SS
Sbjct: 228 GRVNILRESS 226

[Close]

BLAST of Carg05293 vs. TAIR10
Match: AT1G49230.1 (RING/U-box superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-25
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 39  FDLNVVMVLSVXXXXXXXXXXXXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLK 98
           FD NVVMVLSV   XXXXXX XXXXXXXXXXX  L+ S +      + +   GV R  LK
Sbjct: 52  FDANVVMVLSVLLCXXXXXXGXXXXXXXXXXXSNLVPSEAGGDNYPVRLTNTGVKRKALK 111

Query: 99  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 158
            F TV YS + N      +D EC ICL++F   +RV++LP C+HGFHV CIDKWLSSH+S
Sbjct: 112 SFQTVSYSTELNL---PGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSS 171

Query: 159 CPKCRNCLSDTSRKV 174
           CP CR+CL  T  K+
Sbjct: 172 CPTCRHCLIQTCEKI 183

[Close]

BLAST of Carg05293 vs. TAIR10
Match: AT1G49210.1 (RING/U-box superfamily protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-25
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS++ N   GI    ECVICL+DF  G+++R+LPKC HGFHV CI
Sbjct: 107 KGIKKKALRMFPVVSYSREMN-LPGIG--EECVICLSDFVSGEQLRLLPKCNHGFHVRCI 166

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL  H +CPKCR+CL +T +K        + G               V V I P+E E
Sbjct: 167 DKWLQHHLTCPKCRHCLVETCQK--------ILGDFSQADSMASTPTESVIVRIDPLEPE 225

Query: 210 GLTCSYRDSS 220
           G   ++R+SS
Sbjct: 227 GRVNTFRESS 225

[Close]

BLAST of Carg05293 vs. TAIR10
Match: AT1G49220.1 (RING/U-box superfamily protein)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-25
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS + N      +D ECVICL+DF  G+++R+LPKC HGFHV CI
Sbjct: 107 KGIKKKALRMFPVVSYSPEMNL---PGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCI 166

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKV 174
           DKWL  H +CPKCRNCL +T +K+
Sbjct: 167 DKWLQQHLTCPKCRNCLVETCQKI 187

[Close]

BLAST of Carg05293 vs. Swiss-Prot
Match: sp|Q9LS99|ATL77_ARATH (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-25
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  LK  P V YS + N   G+    ECVICL+DF  G+++R+LPKC HGFH+ CI
Sbjct: 102 KGIKKKALKMLPVVNYSPEIN-LPGVG--EECVICLSDFVAGEQLRVLPKCNHGFHLRCI 161

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL+ H +CPKCR+CL DT +KV + C +A +                +++ I+P+E E
Sbjct: 162 DKWLTQHMTCPKCRHCLVDTCQKVLSDCDAADQ--------VAATATESIDIRISPLEPE 220

Query: 210 GLTCSYRDSS 220
               ++R+SS
Sbjct: 222 ARVATFRESS 220

[Close]

BLAST of Carg05293 vs. Swiss-Prot
Match: sp|Q94BY6|ATL75_ARATH (RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 56/130 (43.08%), Postives = 74/130 (56.92%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS + N      +  ECVICL+DF  G+++R+LPKC+HGFHV CI
Sbjct: 108 KGINKKALRMFPVVSYSPEMNL---PGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCI 167

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL  H +CPKCR+CL +T +K        + G               V V IAP+E E
Sbjct: 168 DKWLQQHLTCPKCRHCLVETCQK--------ILGDFSQADQVAATPTASVIVRIAPLEPE 226

Query: 210 GLTCSYRDSS 220
           G     R+SS
Sbjct: 228 GRVNILRESS 226

[Close]

BLAST of Carg05293 vs. Swiss-Prot
Match: sp|Q6NQG7|ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 75/135 (55.56%), Postives = 90/135 (66.67%), Query Frame = 0


Query: 39  FDLNVVMVLSVXXXXXXXXXXXXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLK 98
           FD NVVMVLSV   XXXXXX XXXXXXXXXXX  L+ S +      + +   GV R  LK
Sbjct: 52  FDANVVMVLSVLLCXXXXXXGXXXXXXXXXXXSNLVPSEAGGDNYPVRLTNTGVKRKALK 111

Query: 99  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 158
            F TV YS + N      +D EC ICL++F   +RV++LP C+HGFHV CIDKWLSSH+S
Sbjct: 112 SFQTVSYSTELNL---PGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSS 171

Query: 159 CPKCRNCLSDTSRKV 174
           CP CR+CL  T  K+
Sbjct: 172 CPTCRHCLIQTCEKI 183

[Close]

BLAST of Carg05293 vs. Swiss-Prot
Match: sp|Q6NML0|ATL76_ARATH (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-24
Identity = 57/130 (43.85%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS++ N   GI    ECVICL+DF  G+++R+LPKC HGFHV CI
Sbjct: 107 KGIKKKALRMFPVVSYSREMN-LPGIG--EECVICLSDFVSGEQLRLLPKCNHGFHVRCI 166

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVERE 209
           DKWL  H +CPKCR+CL +T +K        + G               V V I P+E E
Sbjct: 167 DKWLQHHLTCPKCRHCLVETCQK--------ILGDFSQADSMASTPTESVIVRIDPLEPE 225

Query: 210 GLTCSYRDSS 220
           G   ++R+SS
Sbjct: 227 GRVNTFRESS 225

[Close]

BLAST of Carg05293 vs. Swiss-Prot
Match: sp|P0C034|ATL10_ARATH (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-24
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 90  KGVGRNTLKKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCI 149
           KG+ +  L+ FP V YS + N      +D ECVICL+DF  G+++R+LPKC HGFHV CI
Sbjct: 107 KGIKKKALRMFPVVSYSPEMNL---PGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCI 166

Query: 150 DKWLSSHTSCPKCRNCLSDTSRKV 174
           DKWL  H +CPKCRNCL +T +K+
Sbjct: 167 DKWLQQHLTCPKCRNCLVETCQKI 187

[Close]

BLAST of Carg05293 vs. TrEMBL
Match: tr|A0A1S3B203|A0A1S3B203_CUCME (RING-H2 finger protein ATL78 OS=Cucumis melo OX=3656 GN=LOC103485255 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 135/226 (59.73%), Postives = 149/226 (65.93%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLS-VXXXXXXXXXX 60
           MSIS +RRFLLP+                         FD+NVVMVLS  XXXXXXXXXX
Sbjct: 1   MSISNSRRFLLPS------PTAAASPPELAQPRPGFGSFDMNVVMVLSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDG 120
           XXXXXXXXXXXXX       R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DG 120

Query: 121 ECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG- 180
           ECVICL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGCG 
Sbjct: 121 ECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKIAAGCGQ 180

Query: 181 ------SAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDS 219
                 +A                  VNV IAPVEREG+  +YR+S
Sbjct: 181 ETPVTTAATAAESSSSVEPPRAEEVEVNVVIAPVEREGMINNYRES 218

[Close]

BLAST of Carg05293 vs. TrEMBL
Match: tr|A0A0A0KF92|A0A0A0KF92_CUCSA (RING-H2 zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 135/225 (60.00%), Postives = 150/225 (66.67%), Query Frame = 0


Query: 1   MSISITRRFLLPTXXXXXXXXXXXXXXXXXXXXXXXXXFDLNVVMVLS-VXXXXXXXXXX 60
           MSIS +RRFL+P+                         FD+NVVMVLS  XXXXXXXXXX
Sbjct: 1   MSISNSRRFLIPS------ATVAATPPELAQPRPGFGSFDMNVVMVLSXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLKKFPTVEYSKQSNKFRGIAMDG 120
           XXXXXXXXXXXXX       R GG + +HPKGV RN LKKFPTVEYSK+ NK RGI  DG
Sbjct: 61  XXXXXXXXXXXXXXXXXXXGRGGGALVVHPKGVRRNVLKKFPTVEYSKEGNKLRGI--DG 120

Query: 121 ECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTSCPKCRNCLSDTSRKVDAGCG- 180
           ECVICL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHTSCPKCRNCL+DT  K+ AGC  
Sbjct: 121 ECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHTSCPKCRNCLTDTCHKITAGCAQ 180

Query: 181 -----SAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYRDS 219
                +A E S              VNV IAPVEREG+  +YR+S
Sbjct: 181 ETHVTTAAESS--SSVEPPRAEEVGVNVVIAPVEREGMINNYRES 215

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BLAST of Carg05293 vs. TrEMBL
Match: tr|Q8W550|Q8W550_CUCME (RING-H2 zinc finger protein (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 4.9e-42
Identity = 110/141 (78.01%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 39  FDLNVVMVLS-VXXXXXXXXXXXXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTL 98
           FD+NVVMVLS  XXXXXXXXXXXXXXXXXXXXXXX       R GG + +HPKGV RN L
Sbjct: 25  FDMNVVMVLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGGGALVVHPKGVRRNVL 84

Query: 99  KKFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHT 158
           KKFPTVEYSK+ NK RGI  DGECVICL +FE GDRVR+LPKCYHGFHVHCIDKWLSSHT
Sbjct: 85  KKFPTVEYSKEGNKLRGI--DGECVICLLEFEAGDRVRVLPKCYHGFHVHCIDKWLSSHT 144

Query: 159 SCPKCRNCLSDTSRKVDAGCG 179
           SCPKCRNCL+DT  K+ AGCG
Sbjct: 145 SCPKCRNCLTDTCHKIAAGCG 163

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BLAST of Carg05293 vs. TrEMBL
Match: tr|A0A061DIQ7|A0A061DIQ7_THECC (RING zinc finger protein OS=Theobroma cacao OX=3641 GN=TCM_001369 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.3e-30
Identity = 83/178 (46.63%), Postives = 96/178 (53.93%), Query Frame = 0


Query: 39  FDLNVVMVLSVXXXXXXXXXXXXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLK 98
           FD NVVMVLSV                       L+AS S     +  +   GV R  LK
Sbjct: 56  FDANVVMVLSVLLCALICSLGLNSIIRCALRCTGLVASESGA-STSARLANTGVKRKALK 115

Query: 99  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 158
            FPTV YS    K  G  +D EC+ICL+DF PGDRVR+LPKC HGFHV CIDKWLSSH+S
Sbjct: 116 TFPTVNYSADL-KLPG--LDTECIICLSDFTPGDRVRLLPKCNHGFHVRCIDKWLSSHSS 175

Query: 159 CPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYR 217
           CPKCR+CL +T +K+  GC  A                    V IAPV+ EGL  SYR
Sbjct: 176 CPKCRHCLLETCQKI-VGCSQASSSGPPPVQETI--------VTIAPVDPEGLIHSYR 220

[Close]

BLAST of Carg05293 vs. TrEMBL
Match: tr|A0A1U8I8L0|A0A1U8I8L0_GOSHI (RING-H2 finger protein ATL78-like OS=Gossypium hirsutum OX=3635 GN=LOC107892094 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.3e-30
Identity = 98/178 (55.06%), Postives = 112/178 (62.92%), Query Frame = 0


Query: 39  FDLNVVMVLSVXXXXXXXXXXXXXXXXXXXXXXXLLASASARHGGNIAIHPKGVGRNTLK 98
           FD N+VMVLSV    XXXXXXXXXXXXXXXXXX L+AS S     +  +  KGV R  LK
Sbjct: 50  FDANIVMVLSVLLCAXXXXXXXXXXXXXXXXXXSLIASESGATTSS-RLANKGVKRKALK 109

Query: 99  KFPTVEYSKQSNKFRGIAMDGECVICLADFEPGDRVRILPKCYHGFHVHCIDKWLSSHTS 158
            FPTV YS   N  R   +D EC+ICL+DF  GDRVR+LPKC HGFHV CIDKWLS+H+S
Sbjct: 110 TFPTVNYSADLNLPR---LDSECIICLSDFTAGDRVRLLPKCNHGFHVRCIDKWLSAHSS 169

Query: 159 CPKCRNCLSDTSRKVDAGCGSAVEGSXXXXXXXXXXXXXXVNVGIAPVEREGLTCSYR 217
           CPKCR+CL DT +K+  GC  A                      I PV+REG   SYR
Sbjct: 170 CPKCRHCLVDTCQKI-VGCTQASSSEPPPVQETILSI-------ITPVDREGFIHSYR 215

The following BLAST results are available for this feature:

BLAST of Carg05293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518448.1	1.0e-75	80.45	RING-H2 finger protein ATL78-like [Cucurbita pepo subsp. pepo]	[more]
XP_022963109.1	3.0e-75	83.78	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
XP_008441014.1	4.0e-48	59.73	PREDICTED: RING-H2 finger protein ATL78 [Cucumis melo]	[more]
XP_004148642.1	2.6e-47	60.00	PREDICTED: RING-H2 finger protein ATL78-like [Cucumis sativus] >KGN48380.1 RING-...	[more]
XP_022977833.1	2.5e-42	63.68	RING-H2 finger protein ATL78-like [Cucurbita maxima]	[more]

BLAST of Carg05293 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18773.1	1.4e-26	42.31	RING/U-box superfamily protein	[more]
AT1G49200.1	6.9e-26	43.08	RING/U-box superfamily protein	[more]
AT1G49230.1	1.2e-25	55.56	RING/U-box superfamily protein	[more]
AT1G49210.1	1.5e-25	43.85	RING/U-box superfamily protein	[more]
AT1G49220.1	4.5e-25	54.76	RING/U-box superfamily protein	[more]

BLAST of Carg05293 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LS99\|ATL77_ARATH	2.5e-25	42.31	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
sp\|Q94BY6\|ATL75_ARATH	1.2e-24	43.08	RING-H2 finger protein ATL75 OS=Arabidopsis thaliana OX=3702 GN=ATL75 PE=2 SV=1	[more]
sp\|Q6NQG7\|ATL78_ARATH	2.1e-24	55.56	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
sp\|Q6NML0\|ATL76_ARATH	2.8e-24	43.85	E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ...	[more]
sp\|P0C034\|ATL10_ARATH	8.0e-24	54.76	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of Carg05293 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B203\|A0A1S3B203_CUCME	2.7e-48	59.73	RING-H2 finger protein ATL78 OS=Cucumis melo OX=3656 GN=LOC103485255 PE=4 SV=1	[more]
tr\|A0A0A0KF92\|A0A0A0KF92_CUCSA	1.7e-47	60.00	RING-H2 zinc finger protein OS=Cucumis sativus OX=3659 GN=Csa_6G484580 PE=4 SV=1	[more]
tr\|Q8W550\|Q8W550_CUCME	4.9e-42	78.01	RING-H2 zinc finger protein (Fragment) OS=Cucumis melo OX=3656 PE=2 SV=1	[more]
tr\|A0A061DIQ7\|A0A061DIQ7_THECC	4.3e-30	46.63	RING zinc finger protein OS=Theobroma cacao OX=3641 GN=TCM_001369 PE=4 SV=1	[more]
tr\|A0A1U8I8L0\|A0A1U8I8L0_GOSHI	4.3e-30	55.06	RING-H2 finger protein ATL78-like OS=Gossypium hirsutum OX=3635 GN=LOC107892094 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05293-RA	Carg05293-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 e-value: 3.0E-6 score: 36.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 e-value: 8.6E-14 score: 51.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..163 score: 11.958
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 92..173 e-value: 1.7E-20 score: 74.0
None	No IPR available	PANTHER	PTHR14155:SF436	RING-H2 FINGER PROTEIN ATL78	coord: 5..213
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 5..213
None	No IPR available	CDD	cd16461	RING-H2_EL5_like	coord: 120..163 e-value: 3.24824E-15 score: 65.7943
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 120..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05293	Cla008454	Watermelon (97103) v1	carwmB0803
Carg05293	Csa6G484580	Cucumber (Chinese Long) v2	carcuB0826
Carg05293	MELO3C008033	Melon (DHL92) v3.5.1	carmeB0806
Carg05293	ClCG02G000670	Watermelon (Charleston Gray)	carwcgB0785
Carg05293	ClCG01G015650	Watermelon (Charleston Gray)	carwcgB0778
Carg05293	CSPI06G26710	Wild cucumber (PI 183967)	carcpiB0846
Carg05293	Cucsa.101150	Cucumber (Gy14) v1	carcgyB0918
Carg05293	CmaCh03G010780	Cucurbita maxima (Rimu)	carcmaB1125
Carg05293	CmaCh07G007840	Cucurbita maxima (Rimu)	carcmaB1130
Carg05293	CmoCh07G008080	Cucurbita moschata (Rifu)	carcmoB1100
Carg05293	Lsi01G011310	Bottle gourd (USVL1VR-Ls)	carlsiB742
Carg05293	Cp4.1LG10g03320	Cucurbita pepo (Zucchini)	carcpeB1128
Carg05293	Cp4.1LG19g12160	Cucurbita pepo (Zucchini)	carcpeB1135
Carg05293	CsGy6G026120	Cucumber (Gy14) v2	carcgybB0799
Carg05293	MELO3C008033.2	Melon (DHL92) v3.6.1	carmedB0817
Carg05293	CsaV3_6G041880	Cucumber (Chinese Long) v3	carcucB0849
Carg05293	Cla97C01G014560	Watermelon (97103) v2	carwmbB0839
Carg05293	Bhi03G001069	Wax gourd	carwgoB0947

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05293	Carg10552	Silver-seed gourd	carcarB280

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05293	Cucurbita moschata (Rifu)	carcmoB1095
Carg05293	Cucurbita pepo (Zucchini)	carcpeB1132