Cp4.1LG10g01340 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g01340
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Peptidyl-prolyl cis-trans isomerase
Location	Cp4.1LG10 : 3351368 .. 3352316 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTGTCGCCCTTGGATGCCAAGGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCAACTATGTGCCTTACGGGCTTGGCTATTGCGACATTGCCGTGGGATCCAGTAAGGAAGTTCCTTATGGTGAGCTTATCAAAGTAATTTCCCATTTTAGTTTTCTTCTCATGATAAAAAAATTTCAACCATTGGCTTATATGACTGCTTGTTTCTATCCAACTTCTCTTGCAATGCTTGAAAGTCCCTCATATGAATCATTGTATGATGTGTTGCAAGTTGCTAATGAATGTTCTGCAATTGACTATCGTTTCAATCGTTTAATTTTCCCCCCTCCACGCCCAAAGGATTTTATGAATTGTTTTTGGCTTATATTACCTTTCAAATACAGTTTCACTAAACTGCAAGGTTTGCTGATAGGATAGTGTTTGACAGCAGCTATAAGCGTGCTAGACCTCTCACCTTGTGTATTGGTGTTGGCAAGGTAATGATTAATTCACCAATACCGTTTCCTCAGTTGCATGTGAGCTTGAAAAGTTTGGCCAATTTATTAAGAGCGAGCAGCTACAAGCTTTGAGAACAATTATATTGATTAAGAGGTCAGAATAGCCTGTCTAGGATGGAGGCACGTCTCTCTATGTTCCATCTAAATAATATAGGCACCTTGCTGCATTCATCTCCCTAGATGCAGCTATGTTCTAAGAGACCCTTGGAGCAGTTAGTTCTCCCACAAATCCCAATTGTTTGTATGCCCAAAGTAGATAGAAGGATTTTAAAACGCGTCTCCTAGAGAGATATTTACATTACCGTCATCATCTTATGTTCATACCTTTTTCCCCCCTCGTTTAGCCCGAACTTAAGTCTAAGCTAAACGACAAGCCCAAAGAAGTGCATGTCTCTCTGGATTTTCCAAGGATGTGGAACCCGAGCTGA

mRNA sequence

ATGGCTCTGTCGCCCTTGGATGCCAAGGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCAACTATGTGCCTTACGGGCTTGGCTATTGCGACATTGCCGTGGGATCCAGTAAGGAAGTTCCTTATGGTGAGCTTATCAAACCCGAACTTAAGTCTAAGCTAAACGACAAGCCCAAAGAAGTGCATGTCTCTCTGGATTTTCCAAGGATGTGGAACCCGAGCTGA

Coding sequence (CDS)

ATGGCTCTGTCGCCCTTGGATGCCAAGGCTACGAGAATTGAATACTATGCCACTGTTGGAGAACCCCTTTGCGAGTTCAACTATGTGCCTTACGGGCTTGGCTATTGCGACATTGCCGTGGGATCCAGTAAGGAAGTTCCTTATGGTGAGCTTATCAAACCCGAACTTAAGTCTAAGCTAAACGACAAGCCCAAAGAAGTGCATGTCTCTCTGGATTTTCCAAGGATGTGGAACCCGAGCTGA

Protein sequence

MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKLNDKPKEVHVSLDFPRMWNPS

Homology

[Close]

BLAST of Cp4.1LG10g01340 vs. Swiss-Prot
Match: PNSL4_ARATH (Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis thaliana GN=PNSL4 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-13
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           ++L+PLDA ATRI+YYATVG+PLCE++Y   GLG+CD+ VG   E P G L+     ++ 
Sbjct: 64  LSLTPLDADATRIDYYATVGDPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARF 123

Query: 61  ND 63
            D
Sbjct: 124 AD 125

[Close]

BLAST of Cp4.1LG10g01340 vs. TrEMBL
Match: A0A0A0KGU0_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_6G500650 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.7e-20
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPLDA ATRIEYYATVGEPLCEFNYVP GLGYCDIAVGS +EVPYGELI     ++ 
Sbjct: 129 LALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARF 188

Query: 61  ND 63
            D
Sbjct: 189 AD 190

[Close]

BLAST of Cp4.1LG10g01340 vs. TrEMBL
Match: G8FMJ3_CARPA (Peptidyl-prolyl cis-trans isomerase OS=Carica papaya PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +A SPLDA ATRIEYYATVGEPLCEFN+ P GLGYCD+ VG+ +E P GELI     ++ 
Sbjct: 77  LAWSPLDADATRIEYYATVGEPLCEFNFAPSGLGYCDVHVGAGQEAPRGELINVHYTARF 136

Query: 61  ND 63
            D
Sbjct: 137 AD 138

[Close]

BLAST of Cp4.1LG10g01340 vs. TrEMBL
Match: A0A067LQM8_JATCU (Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_24098 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.9e-15
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +A +P+DA ATRIEYYATVG+PLC+FN+V  GLGYCDI+VGS +E PYG+L+     ++ 
Sbjct: 72  LAFTPMDANATRIEYYATVGDPLCDFNFVRSGLGYCDISVGSGQEAPYGQLVNVHYTARF 131

Query: 61  ND 63
            D
Sbjct: 132 AD 133

[Close]

BLAST of Cp4.1LG10g01340 vs. TrEMBL
Match: D7SW18_VITVI (Peptidyl-prolyl cis-trans isomerase OS=Vitis vinifera GN=VIT_07s0031g01150 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-14
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPL+A ATRIEYYATVGEP CE N+   GLGYCD+AVGS +E P+GELI     ++ 
Sbjct: 54  VALSPLEATATRIEYYATVGEPNCELNFAKSGLGYCDVAVGSGEEAPFGELINVHYTARF 113

Query: 61  ND 63
            D
Sbjct: 114 AD 115

[Close]

BLAST of Cp4.1LG10g01340 vs. TrEMBL
Match: A0A151RRR4_CAJCA (Peptidyl-prolyl cis-trans isomerase OS=Cajanus cajan GN=KK1_033240 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.2e-14
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           M L+ LDA ATRIEYYATVGEPLCE+NYV  GLGYCDIA G   E PY ELI     ++ 
Sbjct: 51  MGLTALDADATRIEYYATVGEPLCEYNYVKSGLGYCDIAEGFGDEAPYAELINIHYTARF 110

Query: 61  ND 63
            D
Sbjct: 111 AD 112

[Close]

BLAST of Cp4.1LG10g01340 vs. TAIR10
Match: AT4G39710.1 (AT4G39710.1 FK506-binding protein 16-2)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           ++L+PLDA ATRI+YYATVG+PLCE++Y   GLG+CD+ VG   E P G L+     ++ 
Sbjct: 64  LSLTPLDADATRIDYYATVGDPLCEYSYAKSGLGFCDLDVGFGDEAPRGVLVNIHYTARF 123

Query: 61  ND 63
            D
Sbjct: 124 AD 125

[Close]

BLAST of Cp4.1LG10g01340 vs. NCBI nr
Match: gi|659080142|ref|XP_008440633.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-2, chloroplastic [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPLDA ATRIEYYATVGEPLCEFNYVP GLGYCDIAVGS +EVPYGELI     ++ 
Sbjct: 58  LALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARF 117

Query: 61  ND 63
           +D
Sbjct: 118 SD 119

[Close]

BLAST of Cp4.1LG10g01340 vs. NCBI nr
Match: gi|778719244|ref|XP_011657984.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPLDA ATRIEYYATVGEPLCEFNYVP GLGYCDIAVGS +EVPYGELI     ++ 
Sbjct: 74  LALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARF 133

Query: 61  ND 63
            D
Sbjct: 134 AD 135

[Close]

BLAST of Cp4.1LG10g01340 vs. NCBI nr
Match: gi|700193569|gb|KGN48773.1| (hypothetical protein Csa_6G500650 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPLDA ATRIEYYATVGEPLCEFNYVP GLGYCDIAVGS +EVPYGELI     ++ 
Sbjct: 129 LALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARF 188

Query: 61  ND 63
            D
Sbjct: 189 AD 190

[Close]

BLAST of Cp4.1LG10g01340 vs. NCBI nr
Match: gi|778719254|ref|XP_011657986.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +ALSPLDA ATRIEYYATVGEPLCEFNYVP GLGYCDIAVGS +EVPYGELI     ++ 
Sbjct: 63  LALSPLDANATRIEYYATVGEPLCEFNYVPSGLGYCDIAVGSGEEVPYGELINVHYTARF 122

Query: 61  ND 63
            D
Sbjct: 123 AD 124

[Close]

BLAST of Cp4.1LG10g01340 vs. NCBI nr
Match: gi|354464679|gb|AER26535.1| (fk506-binding protein [Carica papaya])

HSP 1 Score: 89.4 bits (220), Expect = 3.2e-15
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1


Query: 1   MALSPLDAKATRIEYYATVGEPLCEFNYVPYGLGYCDIAVGSSKEVPYGELIKPELKSKL 60
           +A SPLDA ATRIEYYATVGEPLCEFN+ P GLGYCD+ VG+ +E P GELI     ++ 
Sbjct: 77  LAWSPLDADATRIEYYATVGEPLCEFNFAPSGLGYCDVHVGAGQEAPRGELINVHYTARF 136

Query: 61  ND 63
            D
Sbjct: 137 AD 138

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g01340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL4_ARATH	3.9e-13	51.61	Photosynthetic NDH subunit of lumenal location 4, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Cp4.1LG10g01340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGU0_CUCSA	8.7e-20	77.42	Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_6G500650 PE=4 SV=1	[more]
G8FMJ3_CARPA	2.2e-15	64.52	Peptidyl-prolyl cis-trans isomerase OS=Carica papaya PE=2 SV=1	[more]
A0A067LQM8_JATCU	2.9e-15	59.68	Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_24098 PE=4 SV=1	[more]
D7SW18_VITVI	1.1e-14	62.90	Peptidyl-prolyl cis-trans isomerase OS=Vitis vinifera GN=VIT_07s0031g01150 PE=4 ...	[more]
A0A151RRR4_CAJCA	4.2e-14	64.52	Peptidyl-prolyl cis-trans isomerase OS=Cajanus cajan GN=KK1_033240 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g01340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39710.1	2.2e-14	51.61	FK506-binding protein 16-2	[more]

BLAST of Cp4.1LG10g01340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080142\|ref\|XP_008440633.1\|	5.6e-20	77.42	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP16-2, chloroplastic [Cucumis ...	[more]
gi\|778719244\|ref\|XP_011657984.1\|	1.3e-19	77.42	PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic isofo...	[more]
gi\|700193569\|gb\|KGN48773.1\|	1.3e-19	77.42	hypothetical protein Csa_6G500650 [Cucumis sativus]	[more]
gi\|778719254\|ref\|XP_011657986.1\|	1.3e-19	77.42	PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic isofo...	[more]
gi\|354464679\|gb\|AER26535.1\|	3.2e-15	64.52	fk506-binding protein [Carica papaya]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023566	PPIase_FKBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0061077	chaperone-mediated protein folding
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0031679	NADH dehydrogenase (plastoquinone) activity
molecular_function	GO:0005528	FK506 binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g01340.1	Cp4.1LG10g01340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR10516	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 1..52 score: 1.9
None	No IPR available	PANTHER	PTHR10516:SF269	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP16-2, CHLOROPLASTIC	coord: 1..52 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g01340	Cucsa.104610	Cucumber (Gy14) v1	cgycpeB0211
Cp4.1LG10g01340	CmoCh07G005230	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g01340	Cla014165	Watermelon (97103) v1	cpewmB073
Cp4.1LG10g01340	Csa6G500650	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g01340	MELO3C007778	Melon (DHL92) v3.5.1	cpemeB060
Cp4.1LG10g01340	ClCG01G018990	Watermelon (Charleston Gray)	cpewcgB061
Cp4.1LG10g01340	CSPI06G30460	Wild cucumber (PI 183967)	cpecpiB080
Cp4.1LG10g01340	Lsi01G007400	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g01340	MELO3C007778.2	Melon (DHL92) v3.6.1	cpemedB080
Cp4.1LG10g01340	CsaV3_6G045680	Cucumber (Chinese Long) v3	cpecucB0092
Cp4.1LG10g01340	CsGy6G029950	Cucumber (Gy14) v2	cgybcpeB710
Cp4.1LG10g01340	Carg16013	Silver-seed gourd	carcpeB1064

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g01340	Cucurbita pepo (Zucchini)	cpecpeB065
Cp4.1LG10g01340	Cucurbita pepo (Zucchini)	cpecpeB073
Cp4.1LG10g01340	Cucurbita pepo (Zucchini)	cpecpeB076
Cp4.1LG10g01340	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g01340	Cucurbita maxima (Rimu)	cmacpeB702
Cp4.1LG10g01340	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g01340	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g01340	Cucurbita moschata (Rifu)	cmocpeB655
Cp4.1LG10g01340	Melon (DHL92) v3.6.1	cpemedB079
Cp4.1LG10g01340	Silver-seed gourd	carcpeB0554
Cp4.1LG10g01340	Silver-seed gourd	carcpeB1300
Cp4.1LG10g01340	Silver-seed gourd	carcpeB1413
Cp4.1LG10g01340	Wax gourd	cpewgoB0084