Cp4.1LG10g00960 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g00960
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAP-3 complex subunit sigma-2
LocationCp4.1LG10 : 3550743 .. 3552923 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTNTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATTTTTGAGGCACTTCAATTAAATGCCCGATCTGTCTGATGATGAATTCTTGAATTCAGCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGGTTGTCATTTCTGTATTTCAATTAGATTTTTGCAAATTACGAAAAACGATCCACTCTCGCCACTATTATTTACTTAACCTATATTTTGATTCTGATTTCTTTTGTTTTCTGGTTTGGTACAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCGGAGTCCATCTTCGGTCCGGTAATTTTTCGTTGATCGCATGATTCCTTGTAACAATTTCCTTCTAGTACCATATGTAGGATGTATTGCATTGATGATTCTTGGAGAAGCTAGATATTTGTCAAAAATTAATGTTGATTGGTCTTGTTCAACTGATAGCAGCGCAAAGAGTGGCCTGGGTGATCAGTGCCAGATGAATTTAGTTTTATGTGCCTTTATTTGTACCGGAATTGCTTTAACTTTGTCTTCAAATGACCCGTTGGGATTGGCTTTTTCTTTCTGCTGCAGGACTCTCGTCTTGTATACAAACACTTCGCAACTCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGGTACTTCCAATATTATATGTGATGGATTAGTGACCTCTGGATCAACTTTGATATAAATATTATTTACATTCTTCCAAGGCATCAATGAGGACCTACACCTTGGTCCCTCAAGCTTCAAATTGGATATTATCTTGTTATGTTTTGGCATTCTTTAGTATGTAAGTAACAGAAGTGGTGAGAAGTAATAAGTACAAAAAATGGTGAAGCGTTTGGGCTTAGAATTCTCTCACTGAAGAGGCCAGAGTAATTGCATAACTCGAAGAGAATTGAACCAACTATAATGTTGAAGAGAATTGAACCAACTATAATGTTAAATCATCAAAACTTATCATTAAGTGATATGCGCCTTTAAAGTGGAATGCACATGATCGAACCAATCAGTCATATTTGAATGCATTTGAATGTAGATCTTCAGAAGTTTGTTGTAATATACTTTAAGGTATGTAGTGCAGTGATATGATTAGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAATGCAACACATAAATGTAGATGTGGGAACGCACGCAATGCCACATAGAATAGGAAACAAGTGGTGTCTGTTGTTTGTTTCTCAAGTTTGTTTTTTGAAATGGCCAAGTGTACTCAGTTCATGACATAACATTGTTTGGTTGGAAGTACTGCATGACAATCAAGGCATTCTTCTGAACATTTAAATTGGAAATAATACGAATAAAACTTTTCATGCAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTCTCTCTCTTGCATCCATAAAACTGTCGATTGCTTTATTTGCTTTAGTATTAATACATGTTGATGTCGTTGTATTGGCATTGCAGGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTTGCTGTTTAAAGCGAGCTGGTTAAGCGATTCAGCATGCATTCCTTTGATGCCTTGCCTTCAAATTATTACTCGATCTGTTGTGTTGGCTATGACTGATTACTTGGATAGACAAGTCAACAAGCTATCTTACTCATGGACGACACATTTGGCTCATTAATTCCCCCTAGAACATATAGATTGATCAGAAAAATTTCAGATGCCTGCTGAGTATGCAACAGGGTTTGATCGAATCAAAAGATTCCTAGGAATAGAAAACCTAACGGCTTGGTTCGGGTCTCTGTTATTCTGTATTAATCAATCATATTGATTGAATATTGAGTTTATAAAGGTGAATGCTTCATTGAGGTTTCTATAGAGAGACCAAACGAAAGCAGCACACAACAC

mRNA sequence

ATGATACCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCGGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACTCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGAAACATTGGACAAGTGCTTCAAAAATATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTGAATGCTTCATTGAGGTTTCTATAGAGAGACCAAACGAAAGCAGCACACAACAC

Coding sequence (CDS)

ATGATACCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCGGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACTCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGAAACATTGGACAAGTGCTTCAAAAATATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTGAATGCTTCATTGAGGTTTCTATAGAGAGACCAAACGAAAGCAGCACACAACAC

Protein sequence

MIPRREAAGAHSQRPWSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQETLDKCFKNMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRGECFIEVSIERPNESSTQH
Homology
[Close]
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match: AP3S_ARATH (AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 4.7e-41
Identity = 91/125 (72.80%), Postives = 101/125 (80.80%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SR ENVSNF+E ES+FGPDSRLVYKH+ATLYFV VF+ SENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 127
            N            MH++LDEI+ GGQVLETSSAEV+KAVEEISKLE ASNSI+ V K+V
Sbjct: 101 SNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match: AP3S2_PONAB (AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 1 

Query: 18  RAENVSNFVEAESIFG-PDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 77
           R +N+ NF+E  S+ G  D +L+Y+H+ATLYFVF  +SSE+EL +LDLIQ   ETLDKCF
Sbjct: 42  RDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF 101

Query: 78  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSIN 116
           +N            +H IL E++ GG VLET+  E+V  +E  ++LE +   ++
Sbjct: 102 ENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match: AP3S2_MOUSE (AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 1 

Query: 18  RAENVSNFVEAESIFG-PDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 77
           R +N+ NF+E  S+ G  D +L+Y+H+ATLYFVF  +SSE+EL +LDLIQ   ETLDKCF
Sbjct: 42  RDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF 101

Query: 78  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSIN 116
           +N            +H IL E++ GG VLET+  E+V  +E  ++LE +   ++
Sbjct: 102 ENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match: AP3S2_HUMAN (AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 1 

Query: 18  RAENVSNFVEAESIFG-PDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 77
           R +N+ NF+E  S+ G  D +L+Y+H+ATLYFVF  +SSE+EL +LDLIQ   ETLDKCF
Sbjct: 42  RDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF 101

Query: 78  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSIN 116
           +N            +H IL E++ GG VLET+  E+V  +E  ++LE +   ++
Sbjct: 102 ENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match: AP3S2_BOVIN (AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-18
Identity = 51/114 (44.74%), Postives = 74/114 (64.91%), Query Frame = 1 

Query: 18  RAENVSNFVEAESIFG-PDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 77
           R +N+ NF+E  S+ G  D +L+Y+H+ATLYFVF  +SSE+EL +LDLIQ   ETLDKCF
Sbjct: 42  RDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCF 101

Query: 78  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSIN 116
           +N            +H IL E++ GG VLET+  E+V  +E  ++LE +   ++
Sbjct: 102 ENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKSEGGLS 155

[Close]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match: M5VR99_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012523mg PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFV+AESIFGPD+RLVYKHFATLYFVFVF+SSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFVDAESIFGPDTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            MH++LDEII GGQVLETSS EV+KAVEEISKLETASN+I+ V K+V
Sbjct: 101 KNVCELDVVLNYSKMHTVLDEIIFGGQVLETSSTEVMKAVEEISKLETASNAISLVPKSV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match: D7SPE0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01770 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFVEA+S+FGPD+RLVYKH+ATLYFVFVF+SSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFVEADSVFGPDTRLVYKHYATLYFVFVFDSSENELAMLDLIQVLVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            +H+ILDEII GGQVLETSSAEV+KAVEEIS+LETASN+I  V K++
Sbjct: 101 KNVCELDIVFNYSKLHTILDEIIFGGQVLETSSAEVMKAVEEISRLETASNTITLVPKSI 160

[Close]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match: A0A061DFS8_THECC (Clathrin adaptor complex small chain family protein OS=Theobroma cacao GN=TCM_000388 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.8e-40
Identity = 94/124 (75.81%), Postives = 102/124 (82.26%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNF+EAESIFGPDSRLVYKHFATLYFVFVF+SSENELA+LDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFIEAESIFGPDSRLVYKHFATLYFVFVFDSSENELAVLDLIQVFVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            MH+ILDEII GGQVLETSS EV+KAVEEISKLE ASN+I  + K+ 
Sbjct: 101 KNVCELDIVFNYSKMHTILDEIIFGGQVLETSSTEVMKAVEEISKLEAASNAITLIPKSA 160

[Close]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match: V4SP93_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026648mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-39
Identity = 93/123 (75.61%), Postives = 103/123 (83.74%), Query Frame = 1 

Query: 18  RAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCFK 77
           RA+NVSNFVEA+SIFGP +RLVYKHFATLYFVFVF+SSENELAMLDLIQ   ETLDKCFK
Sbjct: 42  RADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFK 101

Query: 78  N------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVS 126
           N            +H+ILDEII GGQVLETSS EV+KAVEEISKLE+ASN+I  VSK+VS
Sbjct: 102 NVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKLESASNAIALVSKSVS 161

[Close]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match: C6SZQ0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G056900 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.2e-38
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SR E+VSNFV+AES FGPDSRLVYKHFATLYFVF+F+SSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRPEHVSNFVDAESFFGPDSRLVYKHFATLYFVFIFDSSENELAMLDLIQVLVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 128
           +N            MH+ILDEII GGQVLETSS EV+KA+EEIS+LE+AS +IN V K+V
Sbjct: 101 RNVCELDIVFNYSKMHTILDEIILGGQVLETSSNEVMKAIEEISRLESASKAINLVPKSV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. TAIR10
Match: AT3G50860.1 (AT3G50860.1 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 168.7 bits (426), Expect = 2.6e-42
Identity = 91/125 (72.80%), Postives = 101/125 (80.80%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SR ENVSNF+E ES+FGPDSRLVYKH+ATLYFV VF+ SENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRPENVSNFLEIESLFGPDSRLVYKHYATLYFVLVFDGSENELAMLDLIQVLVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 127
            N            MH++LDEI+ GGQVLETSSAEV+KAVEEISKLE ASNSI+ V K+V
Sbjct: 101 SNVCELDIVFNYSKMHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match: gi|659102916|ref|XP_008452384.1| (PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.4e-45
Identity = 105/125 (84.00%), Postives = 108/125 (86.40%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAEN+SNFVEAESIFG DSRLVYKHFATLYFV VFNSSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENISNFVEAESIFGSDSRLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 127
           KN            MHSILDEIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTV
Sbjct: 101 KNVCELDLVFNYSKMHSILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match: gi|778707002|ref|XP_011655957.1| (PREDICTED: AP-3 complex subunit sigma [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 7.7e-44
Identity = 103/125 (82.40%), Postives = 106/125 (84.80%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFVE ESIFG DS LVYKHFATLYFV VFNSSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFVETESIFGLDSHLVYKHFATLYFVLVFNSSENELAMLDLIQVFVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 127
           KN            MH+ILDEIISGGQVLETSS+EV+KAVEEISKLETASNSINFVSKTV
Sbjct: 101 KNVCELDLVFNYSKMHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match: gi|595807839|ref|XP_007202678.1| (hypothetical protein PRUPE_ppa012523mg [Prunus persica])

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFV+AESIFGPD+RLVYKHFATLYFVFVF+SSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFVDAESIFGPDTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            MH++LDEII GGQVLETSS EV+KAVEEISKLETASN+I+ V K+V
Sbjct: 101 KNVCELDVVLNYSKMHTVLDEIIFGGQVLETSSTEVMKAVEEISKLETASNAISLVPKSV 160

[Close]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match: gi|297735157|emb|CBI17519.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFVEA+S+FGPD+RLVYKH+ATLYFVFVF+SSENELAMLDLIQ   ETLDKCF
Sbjct: 41  SRAENVSNFVEADSVFGPDTRLVYKHYATLYFVFVFDSSENELAMLDLIQVLVETLDKCF 100

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            +H+ILDEII GGQVLETSSAEV+KAVEEIS+LETASN+I  V K++
Sbjct: 101 KNVCELDIVFNYSKLHTILDEIIFGGQVLETSSAEVMKAVEEISRLETASNTITLVPKSI 160

[Close]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match: gi|731387151|ref|XP_002266832.2| (PREDICTED: AP-3 complex subunit sigma [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 1 

Query: 17  SRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQ---ETLDKCF 76
           SRAENVSNFVEA+S+FGPD+RLVYKH+ATLYFVFVF+SSENELAMLDLIQ   ETLDKCF
Sbjct: 84  SRAENVSNFVEADSVFGPDTRLVYKHYATLYFVFVFDSSENELAMLDLIQVLVETLDKCF 143

Query: 77  KN------------MHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTV 126
           KN            +H+ILDEII GGQVLETSSAEV+KAVEEIS+LETASN+I  V K++
Sbjct: 144 KNVCELDIVFNYSKLHTILDEIIFGGQVLETSSAEVMKAVEEISRLETASNTITLVPKSI 203

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g00960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AP3S_ARATH4.7e-4172.80AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1[more]
AP3S2_PONAB3.2e-1844.74AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1[more]
AP3S2_MOUSE3.2e-1844.74AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1[more]
AP3S2_HUMAN3.2e-1844.74AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1[more]
AP3S2_BOVIN3.2e-1844.74AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1[more]
BLAST of Cp4.1LG10g00960 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VR99_PRUPE1.2e-4076.61Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012523mg PE=4 SV=1[more]
D7SPE0_VITVI1.6e-4075.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01770 PE=4 SV=... [more]
A0A061DFS8_THECC2.8e-4075.81Clathrin adaptor complex small chain family protein OS=Theobroma cacao GN=TCM_00... [more]
V4SP93_9ROSI2.3e-3975.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026648mg PE=4 SV=1[more]
C6SZQ0_SOYBN1.2e-3871.43Uncharacterized protein OS=Glycine max GN=GLYMA_02G056900 PE=2 SV=1[more]
BLAST of Cp4.1LG10g00960 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G50860.12.6e-4272.80 Clathrin adaptor complex small chain family protein[more]
BLAST of Cp4.1LG10g00960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102916|ref|XP_008452384.1|2.4e-4584.00PREDICTED: AP-3 complex subunit sigma [Cucumis melo][more]
gi|778707002|ref|XP_011655957.1|7.7e-4482.40PREDICTED: AP-3 complex subunit sigma [Cucumis sativus][more]
gi|595807839|ref|XP_007202678.1|1.8e-4076.61hypothetical protein PRUPE_ppa012523mg [Prunus persica][more]
gi|297735157|emb|CBI17519.3|2.3e-4075.00unnamed protein product [Vitis vinifera][more]
gi|731387151|ref|XP_002266832.2|2.3e-4075.00PREDICTED: AP-3 complex subunit sigma [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030123AP-3 adaptor complex
GO:0030117membrane coat
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
GO:0006810transport
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0008565protein transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR027155APS3
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf
IPR000804Clathrin_sm-chain_CS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0015031 protein transport
biological_process GO:0006810 transport
cellular_component GO:0030123 AP-3 adaptor complex
cellular_component GO:0030117 membrane coat
molecular_function GO:0008565 protein transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g00960.1Cp4.1LG10g00960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 38..48
scor
IPR011012Longin-like domainunknownSSF64356SNARE-likecoord: 17..106
score: 7.78
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 17..130
score: 1.5
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 17..107
score: 5.1
IPR027155AP-3 complex subunit sigmaPANTHERPTHR11753:SF2ADAPTOR PROTEIN COMPLEX AP-3 SMALL CHAIN SIGMA3coord: 17..130
score: 1.5
NoneNo IPR availableunknownCoilCoilcoord: 90..110
scor
NoneNo IPR availableGENE3DG3DSA:3.30.450.60coord: 16..107
score: 6.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g00960CmaCh03G007510Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g00960CmaCh07G004890Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g00960CmoCh03G007800Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g00960Carg00646Silver-seed gourdcarcpeB0554
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g00960Wax gourdcpewgoB0084
Cp4.1LG10g00960Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG10g00960Cucurbita pepo (Zucchini)cpecpeB073
Cp4.1LG10g00960Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g00960Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG10g00960Cucurbita pepo (Zucchini)cpecpeB103
Cp4.1LG10g00960Cucumber (Gy14) v1cgycpeB0331
Cp4.1LG10g00960Cucumber (Gy14) v1cgycpeB0610
Cp4.1LG10g00960Cucumber (Gy14) v1cgycpeB0876
Cp4.1LG10g00960Cucurbita maxima (Rimu)cmacpeB459
Cp4.1LG10g00960Cucurbita maxima (Rimu)cmacpeB702
Cp4.1LG10g00960Cucurbita moschata (Rifu)cmocpeB003
Cp4.1LG10g00960Cucurbita moschata (Rifu)cmocpeB146
Cp4.1LG10g00960Cucurbita moschata (Rifu)cmocpeB419
Cp4.1LG10g00960Cucurbita moschata (Rifu)cmocpeB655
Cp4.1LG10g00960Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g00960Wild cucumber (PI 183967)cpecpiB053
Cp4.1LG10g00960Wild cucumber (PI 183967)cpecpiB061
Cp4.1LG10g00960Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g00960Cucumber (Chinese Long) v2cpecuB059
Cp4.1LG10g00960Cucumber (Chinese Long) v2cpecuB065
Cp4.1LG10g00960Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g00960Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g00960Bottle gourd (USVL1VR-Ls)cpelsiB065
Cp4.1LG10g00960Bottle gourd (USVL1VR-Ls)cpelsiB069
Cp4.1LG10g00960Watermelon (Charleston Gray)cpewcgB085
Cp4.1LG10g00960Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g00960Watermelon (Charleston Gray)cpewcgB088
Cp4.1LG10g00960Watermelon (97103) v1cpewmB068
Cp4.1LG10g00960Watermelon (97103) v1cpewmB072
Cp4.1LG10g00960Watermelon (97103) v1cpewmB073
Cp4.1LG10g00960Melon (DHL92) v3.5.1cpemeB052
Cp4.1LG10g00960Melon (DHL92) v3.5.1cpemeB056
Cp4.1LG10g00960Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g00960Cucumber (Gy14) v2cgybcpeB292
Cp4.1LG10g00960Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g00960Melon (DHL92) v3.6.1cpemedB068
Cp4.1LG10g00960Melon (DHL92) v3.6.1cpemedB073
Cp4.1LG10g00960Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g00960Silver-seed gourdcarcpeB1064
Cp4.1LG10g00960Silver-seed gourdcarcpeB1300
Cp4.1LG10g00960Silver-seed gourdcarcpeB1306
Cp4.1LG10g00960Silver-seed gourdcarcpeB1350
Cp4.1LG10g00960Silver-seed gourdcarcpeB1413
Cp4.1LG10g00960Cucumber (Chinese Long) v3cpecucB0061
Cp4.1LG10g00960Cucumber (Chinese Long) v3cpecucB0071
Cp4.1LG10g00960Cucumber (Chinese Long) v3cpecucB0092