CmaCh07G004890 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh07G004890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	AP-1 complex subunit sigma-like protein
Location	Cma_Chr07 : 2123394 .. 2124048 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACTATTTTTGATGAAATCATTTCCGGTAGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTGAAGACTGTCGAAGAAATATCCAAGTGCTATTTCTCTCCCTCACTAAAAAAAAAAAAAAAAAAAAAAAAACTGTCGATTGCTGCGTGTGTTTTAGGCATCAATACATTGCAGGTTTGATGTCCTTGCACTGGCATTGCAGGTTAGAAGCAGCGTCAAATTCCATCAACTTCGTATCCAAAACAGTTTCGGGTTGGCGGGGTTGAGTTTTCTGTTTTAAGCGAGCTTGTTAAACAATAAAGTACGCCATTTGAATTGCCTTGCCTTCAAATTTTTTCACTGACTGAATATTGAGTTTTGTTCAAGGGAATTCTTGCAGATTTTCTTCAATCACACGGCATATTGGTTTATGAGAAGTTAGTCAAAATCTCCGCAGAACTTTTTTATTGGTGTCCTGTGTTTTTGACCTGCAGTACATGGAAATGGATATTTGCTTCAATGCCAGATTTAAAAGGGTGTAGTAAACCTTATTTATAAGAGTGTGGAAACATCTCAATAATTCTTGTTCCTGTCGATCACCGCTCCTCAATCTCAAAGTTCCTCCCTATCAGGGTCACTTACGATTTTGTTCAGATGTTATCAATGAGGA

mRNA sequence

ATGCATACTATTTTTGATGAAATCATTTCCGGTAGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTGAAGACTGTCGAAGAAATATCCAAGTTAGAAGCAGCGTCAAATTCCATCAACTTCGTATCCAAAACAGTTTCGGATTTTCTTCAATCACACGGCATATTGGTTTATGAGAAGTTAGTCAAAATCTCCGCAGAACTTTTTTATTGGTGTCCTGTGTTTTTGACCTGCAGTACATGGAAATGGATATTTGCTTCAATGCCAGATTTAAAAGGGTGTAGTAAACCTTATTTATAAGAGTGTGGAAACATCTCAATAATTCTTGTTCCTGTCGATCACCGCTCCTCAATCTCAAAGTTCCTCCCTATCAGGGTCACTTACGATTTTGTTCAGATGTTATCAATGAGGA

Coding sequence (CDS)

ATGCATACTATTTTTGATGAAATCATTTCCGGTAGCCAAGTGCTAGAGACTTGTTCTTCTGAAGTATTGAAGACTGTCGAAGAAATATCCAAGTTAGAAGCAGCGTCAAATTCCATCAACTTCGTATCCAAAACAGTTTCGGATTTTCTTCAATCACACGGCATATTGGTTTATGAGAAGTTAGTCAAAATCTCCGCAGAACTTTTTTATTGGTGTCCTGTGTTTTTGACCTGCAGTACATGGAAATGGATATTTGCTTCAATGCCAGATTTAAAAGGGTGTAGTAAACCTTATTTATAA

Protein sequence

MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDFLQSHGILVYEKLVKISAELFYWCPVFLTCSTWKWIFASMPDLKGCSKPYL

Homology

[Close]

BLAST of CmaCh07G004890 vs. Swiss-Prot
Match: AP3S_ARATH (AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-09
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
           MH + DEI+ G QVLET S+EV+K VEEISKLEAASNSI+ V K+VS
Sbjct: 115 MHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVS 161

[Close]

BLAST of CmaCh07G004890 vs. TrEMBL
Match: A0A0A0KV87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G628670 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
          MHTI DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Sbjct: 7  MHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVS 53

[Close]

BLAST of CmaCh07G004890 vs. TrEMBL
Match: A0A151SEJ3_CAJCA (AP-3 complex subunit sigma-2 OS=Cajanus cajan GN=KK1_024843 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           MHTI DEII G QVLET S+EV+K +EEISKLEAASN+IN V K+VS +
Sbjct: 115 MHTILDEIILGGQVLETSSTEVMKAIEEISKLEAASNAINLVPKSVSSW 163

[Close]

BLAST of CmaCh07G004890 vs. TrEMBL
Match: A0A059ASD7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02443 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-08
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           M TI DEI+ G QVLET S+EV+K VEEISKLEAASN+I FV KTVS++
Sbjct: 105 MQTILDEIVFGGQVLETSSAEVMKVVEEISKLEAASNAITFVPKTVSNW 153

[Close]

BLAST of CmaCh07G004890 vs. TrEMBL
Match: G7LES2_MEDTR (AP-1 complex subunit sigma-like protein OS=Medicago truncatula GN=MTR_8g077600 PE=4 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           MHTI DEII G QVLET S+EVLK VEEI+KLEAAS++IN V K+VS +
Sbjct: 115 MHTILDEIIFGGQVLETSSAEVLKAVEEITKLEAASSAINLVPKSVSSW 163

[Close]

BLAST of CmaCh07G004890 vs. TrEMBL
Match: I3STV6_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           MHTI DEII G QVLET S+EVLK VEEI+KLEAAS++IN V K+VS +
Sbjct: 115 MHTILDEIIFGGQVLETSSAEVLKAVEEITKLEAASSAINLVPKSVSSW 163

[Close]

BLAST of CmaCh07G004890 vs. TAIR10
Match: AT3G50860.1 (AT3G50860.1 Clathrin adaptor complex small chain family protein)

HSP 1 Score: 63.5 bits (153), Expect = 8.2e-11
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
           MH + DEI+ G QVLET S+EV+K VEEISKLEAASNSI+ V K+VS
Sbjct: 115 MHAVLDEIVFGGQVLETSSAEVMKAVEEISKLEAASNSISLVPKSVS 161

[Close]

BLAST of CmaCh07G004890 vs. NCBI nr
Match: gi|778707002|ref|XP_011655957.1| (PREDICTED: AP-3 complex subunit sigma [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
           MHTI DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Sbjct: 115 MHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVS 161

[Close]

BLAST of CmaCh07G004890 vs. NCBI nr
Match: gi|700197185|gb|KGN52362.1| (hypothetical protein Csa_5G628670 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.5e-11
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1  MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
          MHTI DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Sbjct: 7  MHTILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVS 53

[Close]

BLAST of CmaCh07G004890 vs. NCBI nr
Match: gi|659102916|ref|XP_008452384.1| (PREDICTED: AP-3 complex subunit sigma [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVS 48
           MH+I DEIISG QVLET SSEV+K VEEISKLE ASNSINFVSKTVS
Sbjct: 115 MHSILDEIISGGQVLETSSSEVMKAVEEISKLETASNSINFVSKTVS 161

[Close]

BLAST of CmaCh07G004890 vs. NCBI nr
Match: gi|828326563|ref|XP_012573695.1| (PREDICTED: AP-3 complex subunit sigma isoform X2 [Cicer arietinum])

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-09
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           MHTI DEII G QVLET S+EV+K VEEISKLEAAS+SIN VSK+VS +
Sbjct: 115 MHTILDEIIFGGQVLETSSTEVIKAVEEISKLEAASSSINLVSKSVSSW 163

[Close]

BLAST of CmaCh07G004890 vs. NCBI nr
Match: gi|502153217|ref|XP_004509260.1| (PREDICTED: AP-3 complex subunit sigma isoform X1 [Cicer arietinum])

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-09
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1   MHTIFDEIISGSQVLETCSSEVLKTVEEISKLEAASNSINFVSKTVSDF 50
           MHTI DEII G QVLET S+EV+K VEEISKLEAAS+SIN VSK+VS +
Sbjct: 143 MHTILDEIIFGGQVLETSSTEVIKAVEEISKLEAASSSINLVSKSVSSW 191

The following BLAST results are available for this feature:

BLAST of CmaCh07G004890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AP3S_ARATH	1.5e-09	70.21	AP-3 complex subunit sigma OS=Arabidopsis thaliana GN=At3g50860 PE=2 SV=1	[more]

BLAST of CmaCh07G004890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV87_CUCSA	3.1e-11	87.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G628670 PE=4 SV=1	[more]
A0A151SEJ3_CAJCA	1.5e-08	71.43	AP-3 complex subunit sigma-2 OS=Cajanus cajan GN=KK1_024843 PE=4 SV=1	[more]
A0A059ASD7_EUCGR	3.3e-08	71.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02443 PE=4 SV=1	[more]
G7LES2_MEDTR	5.6e-08	71.43	AP-1 complex subunit sigma-like protein OS=Medicago truncatula GN=MTR_8g077600 P...	[more]
I3STV6_MEDTR	5.6e-08	71.43	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]

BLAST of CmaCh07G004890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50860.1	8.2e-11	70.21	Clathrin adaptor complex small chain family protein	[more]

BLAST of CmaCh07G004890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778707002\|ref\|XP_011655957.1\|	4.5e-11	87.23	PREDICTED: AP-3 complex subunit sigma [Cucumis sativus]	[more]
gi\|700197185\|gb\|KGN52362.1\|	4.5e-11	87.23	hypothetical protein Csa_5G628670 [Cucumis sativus]	[more]
gi\|659102916\|ref\|XP_008452384.1\|	1.3e-10	85.11	PREDICTED: AP-3 complex subunit sigma [Cucumis melo]	[more]
gi\|828326563\|ref\|XP_012573695.1\|	7.2e-09	75.51	PREDICTED: AP-3 complex subunit sigma isoform X2 [Cicer arietinum]	[more]
gi\|502153217\|ref\|XP_004509260.1\|	7.2e-09	75.51	PREDICTED: AP-3 complex subunit sigma isoform X1 [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016635	AP_complex_ssu
IPR027155	APS3

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0030123	AP-3 adaptor complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030123	AP-3 adaptor complex
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G004890.1	CmaCh07G004890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	CLATHRIN COAT ASSEMBLY PROTEIN	coord: 1..56 score: 1.1
IPR027155	AP-3 complex subunit sigma	PANTHER	PTHR11753:SF2	ADAPTOR PROTEIN COMPLEX AP-3 SMALL CHAIN SIGMA3	coord: 1..56 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh07G004890	CmoCh03G007800	Cucurbita moschata (Rifu)	cmacmoB858
CmaCh07G004890	Cp4.1LG10g00960	Cucurbita pepo (Zucchini)	cmacpeB866
CmaCh07G004890	Carg00646	Silver-seed gourd	carcmaB0571

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh07G004890	Wax gourd	cmawgoB1072
CmaCh07G004890	Cucurbita maxima (Rimu)	cmacmaB437
CmaCh07G004890	Cucurbita maxima (Rimu)	cmacmaB523
CmaCh07G004890	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh07G004890	Cucumber (Gy14) v1	cgycmaB0344
CmaCh07G004890	Cucumber (Gy14) v1	cgycmaB0945
CmaCh07G004890	Cucurbita moschata (Rifu)	cmacmoB875
CmaCh07G004890	Cucurbita moschata (Rifu)	cmacmoB843
CmaCh07G004890	Cucurbita moschata (Rifu)	cmacmoB852
CmaCh07G004890	Wild cucumber (PI 183967)	cmacpiB875
CmaCh07G004890	Wild cucumber (PI 183967)	cmacpiB893
CmaCh07G004890	Cucumber (Chinese Long) v2	cmacuB877
CmaCh07G004890	Melon (DHL92) v3.5.1	cmameB796
CmaCh07G004890	Melon (DHL92) v3.5.1	cmameB809
CmaCh07G004890	Watermelon (Charleston Gray)	cmawcgB754
CmaCh07G004890	Watermelon (Charleston Gray)	cmawcgB772
CmaCh07G004890	Watermelon (97103) v1	cmawmB826
CmaCh07G004890	Watermelon (97103) v1	cmawmB822
CmaCh07G004890	Cucurbita pepo (Zucchini)	cmacpeB876
CmaCh07G004890	Cucurbita pepo (Zucchini)	cmacpeB880
CmaCh07G004890	Cucurbita pepo (Zucchini)	cmacpeB882
CmaCh07G004890	Bottle gourd (USVL1VR-Ls)	cmalsiB786
CmaCh07G004890	Bottle gourd (USVL1VR-Ls)	cmalsiB808
CmaCh07G004890	Cucumber (Gy14) v2	cgybcmaB266
CmaCh07G004890	Cucumber (Gy14) v2	cgybcmaB861
CmaCh07G004890	Melon (DHL92) v3.6.1	cmamedB885
CmaCh07G004890	Melon (DHL92) v3.6.1	cmamedB907
CmaCh07G004890	Silver-seed gourd	carcmaB1056
CmaCh07G004890	Silver-seed gourd	carcmaB1289
CmaCh07G004890	Silver-seed gourd	carcmaB1295
CmaCh07G004890	Silver-seed gourd	carcmaB1360
CmaCh07G004890	Silver-seed gourd	carcmaB1415
CmaCh07G004890	Cucumber (Chinese Long) v3	cmacucB1010
CmaCh07G004890	Cucumber (Chinese Long) v3	cmacucB1035
CmaCh07G004890	Watermelon (97103) v2	cmawmbB875
CmaCh07G004890	Watermelon (97103) v2	cmawmbB904