Carg00646 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGGTCCCTTTCTGGGATTTGTACCTTCTATTTTTTTGTAATTTTTGAGGCACTTCTATTAAATGCTTGATCTGTCTGATGATGAATTCTTGAATTCAGCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGGTTGGCATTTCTGTATTTCAATTAGATTTTTGCAAATTACGAAAAACGATCCACTCTCGCCACTATTATTTATTTAACCTATATTTTGATTCTGATTTCTTTTGTTTTCTGGTTTGGTACAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGTAATTTTTCGTTGATCGCATGATTCCTTGTAACAATTTCCTTCTAGTACCATATGTAGGATGTATTGCATTGATGATTCTTGGAGAAGCTAGATATTTGTCAAAAATTAATGTTGATTGGTCTTGTTCAACTGATAGCAGCGCAAAGAGTGGCCTGGGTGATCAGTGCCAGATGAATTTAGTTTTATGTGCCTTTGTTTGTACTGGAATTGCTTTTACTGTGTCTTCAAATGACCCGTTGGGATTGGCTTTTTCTTTCTGCTGCAGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGGTACTTCCAATATTATATGTGATGGATTAGTGACCACTGGATCAACTTTGATATAAATATTATTTACATTCTTCCAAGGCATCAATGAAGACATACACCTTGGTCCCTCAAGCTTTAAATTGGATATTATCTTGTTAGGTTTTGGCATTCTTTAGTATATAAGTAACAGAAGTGGCGAGAAGGAATAAGTACAAAAAATGGTGAAGCGTTTGGGCTTAGAATTCTCTCACTTAAGAGGCCAGAGTAATTGCATAATTCGAAGAGAATTGAACCAACTATAATGTTAAATCATCGAAACTTATCATTAAGTGACATGCGCCTTTAAAGTGGAATACACATGATCGAACCAATCAGTCATATTTGAATGCATTTGAATGTAGATCTTCAGAAGTTTGTTGTAATATACTTTAAGGTATGTAGTGCAGTGATATGATTAGCCCTACTTTGTCAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTAATGCAACACATAAATGTAGATGTGGGAACGCACGCAATGCCACATAGAATAGGAAACAAGTGGTGTCTGTTGTTTGTTTCTCAAGTTTGTTTTTTGAAATGGCCAAGTGCACTCAGTTCATGACATAACATTGTTTGGTTGGAAGTGCTGCATGACAGTCAAGGCATTCTTCTGAACATTTAAATTGGAAACAATACGAATAAAACTTTTCATGCAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTGCTCTATCTCTCTCTTGCATCCATAAAACTGTCGATTGCTTTATTTGCTTTAGTATTAATACATGTTGATGTCGTTGTATTGGCATTGCAGGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTCGCTGTTTTAAGCGAGCTGGTTAAGCGATTCAGCATGCATTCCTTTGATGCCTTGCTTTCAAATTATTACTCGATCTGTTGTGTTGGCTCTGACTGATTACTTGGATAGCCAAGTCAACAAGCTATCTTACTCATGGACTGACACATTTGCCTCATTAATTCCCCCTAGAACATAGATTGATCAGACAAATTTCAGATGCCTGCTGAGTATGCAACAGGGTTTGATCAAATCAAAAGATTCCTAGGAATAGAAAACCTAACCGCTTGGTTCGAGTCTCTGTTATTCTGTATTAATCAATCATATTGATTGAATGTTGAGTTTATAAAGGTGAATGCTTCGTTGAGGTTTCTATAGAGAGACCAAACGAAAGCAGCACACAACACGTTATTTTCTTCTACTCCATGGTATTTACATTGTGTAGCTTGACATGGTCTGATACTGATTACATTTCAAGACTTGTGTTGCGAGGGCTAAACCGCGACAAAATCCTAAAGACTATGCCTCACGCAGATCACCGAGAACGATACGTGCTGCATTGCGACCTGGTGCCCCCATGACACCACCTCCAGGATGCGACCCACTACCGCAGAGGTATAGTCCTTTAATTGGTGTCCTGTGATTTGACCTGCAGTACACGGAAACGGATATTTTCCTCAATATAGACTTGAAGCAAGACGAGAGAATTAATTTAAACTGAGAATTACCATCCTTTTACAGGCCGCATCAAGAACAGAGAATCTAGACCCATGGCTCCATGAAAAATATTTCCTCCTGTCATATAGATTACTCAAATTTCAGCAGATAAGCATGTTGAAACTGGAAAATGTGATTTGCAAGACTTCCGATTTCAATATTAATTTTTTGTTCAGATAT ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGAGTTCGCTGTTTTAAGCGAGCTGGTTAAGCGATTCAGCATGCATTCCTTTGATGCCTTGCTTTCAAATTATTACTCGATCTGTTGTGTTGGCTCTGACTGATTACTTGGATAGCCAAGTCAACAAGCTATCTTACTCATGGACTGACACATTTGCCTCATTAATTCCCCCTAGAACATAGATTGATCAGACAAATTTCAGATGCCTGCTGAGTATGCAACAGGGTTTGATCAAATCAAAAGATTCCTAGGAATAGAAAACCTAACCGCTTGGTTCGAGTCTCTGTTATTCTGTATTAATCAATCATATTGATTGAATGTTGAGTTTATAAAGGTGAATGCTTCGTTGAGGTTTCTATAGAGAGACCAAACGAAAGCAGCACACAACACGTTATTTTCTTCTACTCCATGGTATTTACATTGTGTAGCTTGACATGGTCTGATACTGATTACATTTCAAGACTTGTGTTGCGAGGGCTAAACCGCGACAAAATCCTAAAGACTATGCCTCACGCAGATCACCGAGAACGATACGTGCTGCATTGCGACCTGGTGCCCCCATGACACCACCTCCAGGATGCGACCCACTACCGCAGAGGTATAGTCCTTTAATTGGTGTCCTGTGATTTGACCTGCAGTACACGGAAACGGATATTTTCCTCAATATAGACTTGAAGCAAGACGAGAGAATTAATTTAAACTGAGAATTACCATCCTTTTACAGGCCGCATCAAGAACAGAGAATCTAGACCCATGGCTCCATGAAAAATATTTCCTCCTGTCATATAGATTACTCAAATTTCAGCAGATAAGCATGTTGAAACTGGAAAATGTGATTTGCAAGACTTCCGATTTCAATATTAATTTTTTGTTCAGATAT ATGATACGTGCGGTGATAGTGATGAATACCCAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTCGAGAAGCAGCAGGAGCTCATTCGCAGCGTCCATGGAGTACTTTGCAGTCGAGCTGAGAACGTGAGCAATTTCGTCGAGGCTGAGTCCATCTTCGGTCCGGACTCTCGTCTTGTATACAAACACTTCGCAACCCTTTATTTCGTGTTTGTCTTTAACAGTTCTGAGAATGAGCTTGCCATGCTTGACCTGATCCAAGTTTTTGTAGAAACATTGGACAAGTGCTTCAAAAATGTATGTGAGCTCGACTTAGTGTTCAACTACACCAAGATGCATTCTATTTTGGATGAAATCATTTCTGGTGGTCAAGTGCTAGAGACTAGTTCTGCTGAAGTGGTGAAGGCTGTTGAAGAAATATCCAAGTTAGAAACAGCCTCGAATTCTATCAACTTTGTCTCCAAAACAGTTTCTGGTTGGCGGGGTTGA MIRAVIVMNTQGKPRFAKFYDFQPVEKQQELIRSVHGVLCSRAENVSNFVEAESIFGPDSRLVYKHFATLYFVFVFNSSENELAMLDLIQVFVETLDKCFKNVCELDLVFNYTKMHSILDEIISGGQVLETSSAEVVKAVEEISKLETASNSINFVSKTVSGWRG
BLAST of Carg00646 vs. NCBI nr
Match: XP_022978569.1 (AP-3 complex subunit sigma-like [Cucurbita maxima]) HSP 1 Score: 320.5 bits (820), Expect = 3.4e-84 Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of Carg00646 vs. NCBI nr
Match: XP_022950395.1 (AP-3 complex subunit sigma-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 318.5 bits (815), Expect = 1.3e-83 Identity = 163/165 (98.79%), Postives = 165/165 (100.00%), Query Frame = 0
BLAST of Carg00646 vs. NCBI nr
Match: XP_023543862.1 (AP-3 complex subunit sigma [Cucurbita pepo subsp. pepo]) HSP 1 Score: 311.2 bits (796), Expect = 2.1e-81 Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 0
BLAST of Carg00646 vs. NCBI nr
Match: XP_008452384.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452386.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452387.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452388.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452389.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452390.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_008452391.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo] >XP_016901330.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]) HSP 1 Score: 307.0 bits (785), Expect = 3.9e-80 Identity = 155/165 (93.94%), Postives = 163/165 (98.79%), Query Frame = 0
BLAST of Carg00646 vs. NCBI nr
Match: XP_011655957.1 (PREDICTED: AP-3 complex subunit sigma [Cucumis sativus] >XP_011655958.1 PREDICTED: AP-3 complex subunit sigma [Cucumis sativus]) HSP 1 Score: 302.0 bits (772), Expect = 1.3e-78 Identity = 153/165 (92.73%), Postives = 161/165 (97.58%), Query Frame = 0
BLAST of Carg00646 vs. TAIR10
Match: AT3G50860.1 (Clathrin adaptor complex small chain family protein) HSP 1 Score: 270.4 bits (690), Expect = 7.3e-73 Identity = 134/165 (81.21%), Postives = 150/165 (90.91%), Query Frame = 0
BLAST of Carg00646 vs. TAIR10
Match: AT1G47830.1 (SNARE-like superfamily protein) HSP 1 Score: 108.2 bits (269), Expect = 4.8e-24 Identity = 57/147 (38.78%), Postives = 92/147 (62.59%), Query Frame = 0
BLAST of Carg00646 vs. TAIR10
Match: AT2G17380.1 (associated protein 19) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22 Identity = 55/162 (33.95%), Postives = 98/162 (60.49%), Query Frame = 0
BLAST of Carg00646 vs. TAIR10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein) HSP 1 Score: 103.2 bits (256), Expect = 1.6e-22 Identity = 56/162 (34.57%), Postives = 97/162 (59.88%), Query Frame = 0
BLAST of Carg00646 vs. TAIR10
Match: AT2G19790.1 (SNARE-like superfamily protein) HSP 1 Score: 99.8 bits (247), Expect = 1.7e-21 Identity = 49/144 (34.03%), Postives = 93/144 (64.58%), Query Frame = 0
BLAST of Carg00646 vs. Swiss-Prot
Match: sp|Q8VZ37|AP3S_ARATH (AP-3 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=At3g50860 PE=2 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 1.3e-71 Identity = 134/165 (81.21%), Postives = 150/165 (90.91%), Query Frame = 0
BLAST of Carg00646 vs. Swiss-Prot
Match: sp|Q1JQA3|AP3S2_BOVIN (AP-3 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP3S2 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.9e-39 Identity = 78/155 (50.32%), Postives = 112/155 (72.26%), Query Frame = 0
BLAST of Carg00646 vs. Swiss-Prot
Match: sp|P59780|AP3S2_HUMAN (AP-3 complex subunit sigma-2 OS=Homo sapiens OX=9606 GN=AP3S2 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.9e-39 Identity = 78/155 (50.32%), Postives = 112/155 (72.26%), Query Frame = 0
BLAST of Carg00646 vs. Swiss-Prot
Match: sp|Q8BSZ2|AP3S2_MOUSE (AP-3 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap3s2 PE=1 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.9e-39 Identity = 78/155 (50.32%), Postives = 112/155 (72.26%), Query Frame = 0
BLAST of Carg00646 vs. Swiss-Prot
Match: sp|Q5RDP9|AP3S2_PONAB (AP-3 complex subunit sigma-2 OS=Pongo abelii OX=9601 GN=AP3S2 PE=2 SV=1) HSP 1 Score: 162.5 bits (410), Expect = 3.9e-39 Identity = 78/155 (50.32%), Postives = 112/155 (72.26%), Query Frame = 0
BLAST of Carg00646 vs. TrEMBL
Match: tr|A0A1S3BT37|A0A1S3BT37_CUCME (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103493438 PE=3 SV=1) HSP 1 Score: 307.0 bits (785), Expect = 2.6e-80 Identity = 155/165 (93.94%), Postives = 163/165 (98.79%), Query Frame = 0
BLAST of Carg00646 vs. TrEMBL
Match: tr|A0A2I4F470|A0A2I4F470_9ROSI (AP complex subunit sigma OS=Juglans regia OX=51240 GN=LOC108995339 PE=3 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73 Identity = 145/165 (87.88%), Postives = 155/165 (93.94%), Query Frame = 0
BLAST of Carg00646 vs. TrEMBL
Match: tr|V4SP93|V4SP93_9ROSI (AP complex subunit sigma OS=Citrus clementina OX=85681 GN=CICLE_v10026648mg PE=3 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 2.0e-72 Identity = 140/164 (85.37%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Carg00646 vs. TrEMBL
Match: tr|A0A2P5FXK7|A0A2P5FXK7_9ROSA (AP complex subunit sigma OS=Trema orientalis OX=63057 GN=TorRG33x02_015160 PE=3 SV=1) HSP 1 Score: 280.0 bits (715), Expect = 3.4e-72 Identity = 138/164 (84.15%), Postives = 156/164 (95.12%), Query Frame = 0
BLAST of Carg00646 vs. TrEMBL
Match: tr|A0A061DFS8|A0A061DFS8_THECC (AP complex subunit sigma OS=Theobroma cacao OX=3641 GN=TCM_000388 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 9.8e-72 Identity = 139/164 (84.76%), Postives = 153/164 (93.29%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |