Cp4.1LG10g00350 (gene) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGGTAATTTAGTCCGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTGTAGCGTGACGAGTTTGATTCTGTTGATCTTGATTGAATCGAGTCTTTATTCTGATGAATTGCGATGTATTGGTTGTGATTTTGTTGATTTTGCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG ATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGA MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 3.0e-41 Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 6.4e-20 Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H11_VOLCA (Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3) HSP 1 Score: 88.6 bits (218), Expect = 8.7e-17 Identity = 75/191 (39.27%), Postives = 111/191 (58.12%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2) HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16 Identity = 87/201 (43.28%), Postives = 113/201 (56.22%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 9.6e-16 Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: A0A0A0KJB6_CUCSA (Histone H1 OS=Cucumis sativus GN=Csa_6G505280 PE=3 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 3.1e-69 Identity = 170/206 (82.52%), Postives = 179/206 (86.89%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: W9SN28_9ROSA (Histone H1 OS=Morus notabilis GN=L484_026707 PE=3 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47 Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: B9SZV0_RICCO (Histone h1/h5, putative OS=Ricinus communis GN=RCOM_0292320 PE=3 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 1.9e-47 Identity = 135/210 (64.29%), Postives = 159/210 (75.71%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: Q9SWA4_TOBAC (Histone H1C OS=Nicotiana tabacum GN=H1c PE=2 SV=1) HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46 Identity = 127/208 (61.06%), Postives = 156/208 (75.00%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: M5W3I6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011941mg PE=3 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46 Identity = 123/197 (62.44%), Postives = 150/197 (76.14%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3) HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26 Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 85.1 bits (209), Expect = 5.4e-17 Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10 Identity = 81/213 (38.03%), Postives = 109/213 (51.17%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|449434180|ref|XP_004134874.1| (PREDICTED: histone H1 [Cucumis sativus]) HSP 1 Score: 269.6 bits (688), Expect = 4.4e-69 Identity = 170/206 (82.52%), Postives = 179/206 (86.89%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|659080456|ref|XP_008440801.1| (PREDICTED: histone H1 [Cucumis melo]) HSP 1 Score: 266.2 bits (679), Expect = 4.9e-68 Identity = 170/207 (82.13%), Postives = 181/207 (87.44%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|703163539|ref|XP_010113375.1| (Histone H1 [Morus notabilis]) HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47 Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|255581422|ref|XP_002531519.1| (PREDICTED: histone H1 [Ricinus communis]) HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47 Identity = 135/210 (64.29%), Postives = 159/210 (75.71%), Query Frame = 1
BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|1009144210|ref|XP_015889674.1| (PREDICTED: histone H1 [Ziziphus jujuba]) HSP 1 Score: 196.1 bits (497), Expect = 6.2e-47 Identity = 129/206 (62.62%), Postives = 159/206 (77.18%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |