Cp4.1LG10g00350 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG10g00350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHistone H1
LocationCp4.1LG10 : 3756668 .. 3758229 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGGTAATTTAGTCCGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGCTTTGATTGTAGCGTGACGAGTTTGATTCTGTTGATCTTGATTGAATCGAGTCTTTATTCTGATGAATTGCGATGTATTGGTTGTGATTTTGTTGATTTTGCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG

mRNA sequence

ATTGGCACTTAAAATTAACACAGAAAACACAACCTCTCTTCATTTTATGTGCATGAAAATGCAAGCAAAAAACAAACCCCGGTTTGTATTTATCCAAATCACCCTCCGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTCCCTACAACTTGGCTATCCATGTCCACTTGAACTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCAGTGTATTAATTCGTCTCCAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGGTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTACGATTCACACAGATCGCCATTAAAGAACTGGTTGAATCTCAGCCTTTAGATTCAAGACACATGGCTCAGGATTGGTGAAGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTATGCGTCGCCTCGTTTGATTTGAATCAATCCCATCCATGGCCTATGGTTTTG

Coding sequence (CDS)

ATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGCGGAGGATTCTCCTTCTGCGGAGGTTCCGTCTGCGGAGGAGCCGAAGGAGTCAGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTCCGAGGGTGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACGTCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACGGCTAAAGGAAAGTTAAGGAAGATCAAGGCTTCGTATGAGCTATCCGAAGCGGGAAAGAAAGACAAGAAAGCTTCGAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACAAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGA

Protein sequence

MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA
BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-41
Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 1

Query: 14  EDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKN 73
           E+    + P+     + + P  +KK R P+ KKP+ +K  +HPPYFQMIKEA+ +LNEK 
Sbjct: 8   ENPTVVQRPTEASKVKEQAPATDKKPRAPKEKKPKSAKAVTHPPYFQMIKEALLALNEKG 67

Query: 74  GSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKD---- 133
           GSSPYA+AKYME+KHK+ LPANFRKIL LQLKNS AKGKL KIKASY+LSEAGKK+    
Sbjct: 68  GSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLSEAGKKETTTK 127

Query: 134 KKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPK 193
               K+ KA+++KK +  R T   A K +    +KA    KKV AK+ +++TPAK KQPK
Sbjct: 128 TSTKKLPKADSKKKPRSTRATATAAKKTEVPKKAKATPKPKKVGAKRTRKSTPAKAKQPK 187

Query: 194 SIRSPAAKRAKK 202
           SI+SPAAKRAKK
Sbjct: 188 SIKSPAAKRAKK 199

BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.4e-20
Identity = 90/186 (48.39%), Postives = 112/186 (60.22%), Query Frame = 1

Query: 20  EVPSAEEPK-ESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPY 79
           EVP  EEPK E EK  + K S+  +  KPR    ASHP Y +MIK+AI SL EKNGSS Y
Sbjct: 28  EVPEKEEPKAEVEKTKKAKGSKPKKASKPRNP--ASHPTYEEMIKDAIVSLKEKNGSSQY 87

Query: 80  AIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDKKASKVAKA 139
           AIAK++EEK K+ LPANF+K+L   LK + A GKL K+K S++LS A KK   A   AK 
Sbjct: 88  AIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKT 147

Query: 140 NAEKKTKQARTTRATAGKRKDEAASKAAKAVK-KVVAKKPKRTTPAKPKQPKSIRSPAAK 199
            A+ K+ +A+     A K K +A  K   A K K VA KPK+   AKPK   +   P A 
Sbjct: 148 AAKAKSVKAK----PAAKPKAKAVVKPKVASKAKAVAAKPKKAA-AKPKTVAAKTKPTAA 205

Query: 200 RAKKAV 204
           + K  V
Sbjct: 208 KPKAVV 205

BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H11_VOLCA (Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3)

HSP 1 Score: 88.6 bits (218), Expect = 8.7e-17
Identity = 75/191 (39.27%), Postives = 111/191 (58.12%), Query Frame = 1

Query: 12  PAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAITSLNE 71
           PA ++P A+ P A+ PK+ + P   K+ + P+ KKP+ +   +HPPY +M+K+AIT+L E
Sbjct: 18  PAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAP--THPPYIEMVKDAITTLKE 77

Query: 72  KNGSSPYAIAKYMEEKH-KEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGKKDK 131
           +NGSS  A+ K++E K+ K++   NF K L+  +K     GKL K+K S++LSEA K   
Sbjct: 78  RNGSSLPALKKFIENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKA 137

Query: 132 KASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKS 191
           K S   KA A+ + K           +K EA  K A+AVKK  A K K   P K K+ K 
Sbjct: 138 KKSTPKKAKADGEAK----------PKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKV 196

Query: 192 IRSPAAKRAKK 202
            +  A  +A+K
Sbjct: 198 EKKKATPKAEK 196

BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 3.3e-16
Identity = 87/201 (43.28%), Postives = 113/201 (56.22%), Query Frame = 1

Query: 7   AEVKVP-AEDSPSAEVPS-AEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 66
           A++ VP  E +  A V + A +P ++ K  + KKS TP  KKPR +   +HP Y +M+ E
Sbjct: 8   ADIPVPQVEVAADAAVDTPAAKPAKAPKAAKAKKS-TPGPKKPRVTP--AHPSYAEMVSE 67

Query: 67  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 126
           AI +L E++GSS  AI K++E+KHK  LPANFRKIL  Q+K   A GKL K+K SY+L+ 
Sbjct: 68  AIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA- 127

Query: 127 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKP-KRTTPA 186
                 KA    K     K K A   +A A  +K  A S A KA  K  AK P K    A
Sbjct: 128 ------KAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVA 187

Query: 187 KPK---QPKSIRSPAAKRAKK 202
           KPK   +PK+   P AK A K
Sbjct: 188 KPKAAAKPKAAAKPKAKAAAK 198

BLAST of Cp4.1LG10g00350 vs. Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.6e-16
Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 1

Query: 5   GEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 64
           G      P  D+   + P+A+  K   K V+E K +      P++  V+SHP Y +MIK+
Sbjct: 14  GNTAADAPVTDAAVEKKPAAKGRKT--KNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 73

Query: 65  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 124
           AI +L E+ GSS YAI K++EEK KE LP  FRK+L L LK   A GKL K+KAS++L  
Sbjct: 74  AIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS 133

Query: 125 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPK----RT 184
           A  K       A+ +A  K K A T   T  KRK  AASKA    KK +A KPK    + 
Sbjct: 134 ASAKASSPKAAAEKSAPAKKKPA-TVAVTKAKRKVAAASKA----KKTIAVKPKTAAAKK 193

Query: 185 TPAKPKQPKSIRSPAAKRAKKAV 204
             AK K     R+ AA   +KAV
Sbjct: 194 VTAKAKAKPVPRATAAATKRKAV 208

BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: A0A0A0KJB6_CUCSA (Histone H1 OS=Cucumis sativus GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.1e-69
Identity = 170/206 (82.52%), Postives = 179/206 (86.89%), Query Frame = 1

Query: 1   MSSTGEA-EVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYF 60
           MSSTGEA EVKVPAED    EVP+ EEPKE EKPV+EKK R  R KKPRQSKVASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKA-AKAVKKVVAKKP 180
           Y+LSE G KKD  A+KVAKANAEKKTKQARTTR T  KRK     +A +KAVKKVVAKKP
Sbjct: 121 YKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKKP 180

Query: 181 KRTTPAKPKQPKSIRSPAAKRAKKAV 204
           KR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 KRSTPAKPKQPKSIKSPAAKRAKKAV 206

BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: W9SN28_9ROSA (Histone H1 OS=Morus notabilis GN=L484_026707 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.1e-47
Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MS T   +V+ P+ + P AE    EEPK   KPV+EKK R P+ KKP+Q K ASHPPYF+
Sbjct: 1   MSDTA-VQVEAPSVEVPLAEPAPVEEPK---KPVKEKKPRVPKEKKPKQPKAASHPPYFE 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+TSLN+K+GSSPYAIAKYMEEKHK VLPANF+KILALQLKNS A+GKL KIKASY
Sbjct: 61  MIKEALTSLNDKSGSSPYAIAKYMEEKHKAVLPANFKKILALQLKNSVARGKLIKIKASY 120

Query: 121 ELSEAGKKDK-KASKVAKANAEKKTKQA-----RTTRATAGKRKDEAASKAAKAVKKVVA 180
           +LSE GKK+K +  KV+KA+ EKK K+A     R TR T  +R+  A+ K  KA K   A
Sbjct: 121 KLSEEGKKEKSETGKVSKASTEKKPKEAKMTSQRETRKTTSQRETRASKKPEKAKKTTTA 180

Query: 181 ----KKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 205
               K+ K++TP KPKQPKSI+SPAAK+AKK  A
Sbjct: 181 ATKKKRSKKSTPVKPKQPKSIKSPAAKKAKKVAA 210

BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: B9SZV0_RICCO (Histone h1/h5, putative OS=Ricinus communis GN=RCOM_0292320 PE=3 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.9e-47
Identity = 135/210 (64.29%), Postives = 159/210 (75.71%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           M++  EAEV    E  P A   + EE K +EKPV+EKK++ P+ KKP+Q K ASHPPYFQ
Sbjct: 1   MATDKEAEVAATVEQPPPA---AEEEAKPAEKPVKEKKTKAPKEKKPKQPKTASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+ +LNEK+GSSPYAIAKYMEEKHK VLP+NF+KILALQLKNS A+GKL KI+ASY
Sbjct: 61  MIKEALLTLNEKSGSSPYAIAKYMEEKHKAVLPSNFKKILALQLKNSAARGKLIKIRASY 120

Query: 121 ELSEAGKKDKKASKVAKA--NAEKKTKQART----TRATAGKRKDEAASK-AAKAVKKVV 180
           +LSE+ KK+K  +KV KA    +KK KQ +T    TR T    K EAA K AA A KKV 
Sbjct: 121 KLSESNKKEKGTTKVPKAAKGGDKKPKQPKTANVSTRKTRSVNKAEAAKKPAAGATKKVG 180

Query: 181 A-KKPKRTTPAKPKQPKSIRSPAAKRAKKA 203
           A KK K+TTPAKPKQPKSI+SPAAKR KKA
Sbjct: 181 APKKTKKTTPAKPKQPKSIKSPAAKRTKKA 207

BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: Q9SWA4_TOBAC (Histone H1C OS=Nicotiana tabacum GN=H1c PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-46
Identity = 127/208 (61.06%), Postives = 156/208 (75.00%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAE-EPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYF 60
           MS+TGE  V+ PA + P AE P+AE +P  ++K V+EKK R PR KKP+ +K  +HPPYF
Sbjct: 1   MSATGE--VENPAVEQPPAEAPTAENQPPATKKSVKEKKPRAPREKKPKSAKTVTHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120
           QMIKEA+ +LNEK GSSPYAIAKY E+KHK+ LPANFRKIL LQLKNS AKGKL KIKAS
Sbjct: 61  QMIKEALLALNEKGGSSPYAIAKYTEDKHKDELPANFRKILGLQLKNSAAKGKLMKIKAS 120

Query: 121 YELSEAGKKDK---KASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKK 180
           Y+LSEAGKK++      KV KA+++KK +  R+  ATA K +    +K  +  KKV AKK
Sbjct: 121 YKLSEAGKKERITASTKKVPKADSKKKPRSTRSATATAKKTEVPKKAKLTQKPKKVGAKK 180

Query: 181 PKRTTPAKPKQPKSIRSPAAKRAKKAVA 205
            K++ PAK KQPKSI+SPAAKRAKK  A
Sbjct: 181 AKKSAPAKAKQPKSIKSPAAKRAKKVAA 206

BLAST of Cp4.1LG10g00350 vs. TrEMBL
Match: M5W3I6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011941mg PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46
Identity = 123/197 (62.44%), Postives = 150/197 (76.14%), Query Frame = 1

Query: 9   VKVPAEDSPSA-EVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKEAIT 68
           V+ PA ++P A E P+ EEPK+ EKPV+E+K+RTPR KKP++ K A+HPPYFQMIKEA+ 
Sbjct: 7   VQAPAVEAPPAVEAPAMEEPKKEEKPVKERKTRTPREKKPKEPKTAAHPPYFQMIKEALL 66

Query: 69  SLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSEAGK 128
           SLNEK+GSSPYAIAKYMEEKHK VLP+NF+K LALQLKNS A+GKL KI+ASY+LSEAGK
Sbjct: 67  SLNEKSGSSPYAIAKYMEEKHKAVLPSNFKKTLALQLKNSAARGKLIKIRASYKLSEAGK 126

Query: 129 KDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQ 188
           KDK   K   +   K  K+ +TT            + A KA KK  AKK K++T +KPKQ
Sbjct: 127 KDKTTGKTKASTKPKTEKKTKTT------------APAPKATKK-PAKKNKKSTASKPKQ 186

Query: 189 PKSIRSPAAKRAKKAVA 205
           PKSI+SPAAK+ KKAVA
Sbjct: 187 PKSIKSPAAKKPKKAVA 190

BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT2G18050.1 (AT2G18050.1 histone H1-3)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-26
Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 1

Query: 40  RTPRVKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKI 99
           +TP  KKPR+ K  +HPPYFQMIKEA+  L EKNGSSPYAIAK +EEKHK +LP +FRK 
Sbjct: 9   KTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKT 68

Query: 100 LALQLKNSTAKGKLRKIKASYELSEAGK-----KDKKASKVAKANAEKKTKQARTTRATA 159
           L+LQLKNS AKGKL KI+ASY+LS+  K     +DKK  K  K   ++ TK+ R+     
Sbjct: 69  LSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRS----- 128

Query: 160 GKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAA-KRAKKAVA 205
                 ++++  K V   V K+ K+    K +QPKSI+S    K+A KA A
Sbjct: 129 ------SSTRPKKTVS--VNKQEKKRKVKKARQPKSIKSSVGKKKAMKASA 166

BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT1G06760.1 (AT1G06760.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 85.1 bits (209), Expect = 5.4e-17
Identity = 85/203 (41.87%), Postives = 110/203 (54.19%), Query Frame = 1

Query: 5   GEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQMIKE 64
           G      P  D+   + P+A+  K   K V+E K +      P++  V+SHP Y +MIK+
Sbjct: 14  GNTAADAPVTDAAVEKKPAAKGRKT--KNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKD 73

Query: 65  AITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYELSE 124
           AI +L E+ GSS YAI K++EEK KE LP  FRK+L L LK   A GKL K+KAS++L  
Sbjct: 74  AIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASGKLVKVKASFKLPS 133

Query: 125 AGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPK----RT 184
           A  K       A+ +A  K K A T   T  KRK  AASKA    KK +A KPK    + 
Sbjct: 134 ASAKASSPKAAAEKSAPAKKKPA-TVAVTKAKRKVAAASKA----KKTIAVKPKTAAAKK 193

Query: 185 TPAKPKQPKSIRSPAAKRAKKAV 204
             AK K     R+ AA   +KAV
Sbjct: 194 VTAKAKAKPVPRATAAATKRKAV 208

BLAST of Cp4.1LG10g00350 vs. TAIR10
Match: AT2G30620.1 (AT2G30620.1 winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10
Identity = 81/213 (38.03%), Postives = 109/213 (51.17%), Query Frame = 1

Query: 2   SSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQM 61
           S   +  VK P E  P+A+   +++   ++   +  K+  P  KK      +SHP Y +M
Sbjct: 14  SGAADTTVKSP-EKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKT----TSSHPTYEEM 73

Query: 62  IKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASYE 121
           IK+AI +L E+ GSS YAI K++EEKHK  LP  FRK+L + LK   A  KL K+KAS++
Sbjct: 74  IKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVKVKASFK 133

Query: 122 L---------SEAGKKDKKASKVAKANAEKKTKQA-RTTRATAGKRKDEAASKAAKAVKK 181
           +           A    KKA+ VAK   +     A    +A A   K  AA   AKA  K
Sbjct: 134 IPSARSAATPKPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKA--K 193

Query: 182 VVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 205
           V AK   + T AKPK     +S AA    KAVA
Sbjct: 194 VTAKPKAKVTAAKPKS----KSVAAVSKTKAVA 214

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|449434180|ref|XP_004134874.1| (PREDICTED: histone H1 [Cucumis sativus])

HSP 1 Score: 269.6 bits (688), Expect = 4.4e-69
Identity = 170/206 (82.52%), Postives = 179/206 (86.89%), Query Frame = 1

Query: 1   MSSTGEA-EVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYF 60
           MSSTGEA EVKVPAED    EVP+ EEPKE EKPV+EKK R  R KKPRQSKVASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAPVEVPATEEPKEVEKPVKEKKPRATREKKPRQSKVASHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKA-AKAVKKVVAKKP 180
           Y+LSE G KKD  A+KVAKANAEKKTKQARTTR T  KRK     +A +KAVKKVVAKKP
Sbjct: 121 YKLSETGKKKDMNATKVAKANAEKKTKQARTTRTTGRKRKAVKTEEAVSKAVKKVVAKKP 180

Query: 181 KRTTPAKPKQPKSIRSPAAKRAKKAV 204
           KR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 KRSTPAKPKQPKSIKSPAAKRAKKAV 206

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|659080456|ref|XP_008440801.1| (PREDICTED: histone H1 [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 4.9e-68
Identity = 170/207 (82.13%), Postives = 181/207 (87.44%), Query Frame = 1

Query: 1   MSSTGEA-EVKVPAED-SPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPY 60
           M+STGEA EVKVPAED +P   VP+ EEPKE EKPV+EKK R PR KKPRQSKVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVAPVEVVPATEEPKEVEKPVKEKKPRAPREKKPRQSKVASHPPY 60

Query: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL KIKA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYELSEAG-KKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKA-AKAVKKVVAKK 180
           SY+LSE G KKDK A+KVAKANAEK TKQARTTR T  KRK     +A +KAVKKVVAKK
Sbjct: 121 SYKLSEIGKKKDKNATKVAKANAEKITKQARTTRTTGRKRKAVKKEEAVSKAVKKVVAKK 180

Query: 181 PKRTTPAKPKQPKSIRSPAAKRAKKAV 204
           PKR+TPAKPKQPKSI+SPAAKRAKKAV
Sbjct: 181 PKRSTPAKPKQPKSIKSPAAKRAKKAV 207

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|703163539|ref|XP_010113375.1| (Histone H1 [Morus notabilis])

HSP 1 Score: 198.0 bits (502), Expect = 1.6e-47
Identity = 132/214 (61.68%), Postives = 159/214 (74.30%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MS T   +V+ P+ + P AE    EEPK   KPV+EKK R P+ KKP+Q K ASHPPYF+
Sbjct: 1   MSDTA-VQVEAPSVEVPLAEPAPVEEPK---KPVKEKKPRVPKEKKPKQPKAASHPPYFE 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+TSLN+K+GSSPYAIAKYMEEKHK VLPANF+KILALQLKNS A+GKL KIKASY
Sbjct: 61  MIKEALTSLNDKSGSSPYAIAKYMEEKHKAVLPANFKKILALQLKNSVARGKLIKIKASY 120

Query: 121 ELSEAGKKDK-KASKVAKANAEKKTKQA-----RTTRATAGKRKDEAASKAAKAVKKVVA 180
           +LSE GKK+K +  KV+KA+ EKK K+A     R TR T  +R+  A+ K  KA K   A
Sbjct: 121 KLSEEGKKEKSETGKVSKASTEKKPKEAKMTSQRETRKTTSQRETRASKKPEKAKKTTTA 180

Query: 181 ----KKPKRTTPAKPKQPKSIRSPAAKRAKKAVA 205
               K+ K++TP KPKQPKSI+SPAAK+AKK  A
Sbjct: 181 ATKKKRSKKSTPVKPKQPKSIKSPAAKKAKKVAA 210

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|255581422|ref|XP_002531519.1| (PREDICTED: histone H1 [Ricinus communis])

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47
Identity = 135/210 (64.29%), Postives = 159/210 (75.71%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           M++  EAEV    E  P A   + EE K +EKPV+EKK++ P+ KKP+Q K ASHPPYFQ
Sbjct: 1   MATDKEAEVAATVEQPPPA---AEEEAKPAEKPVKEKKTKAPKEKKPKQPKTASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+ +LNEK+GSSPYAIAKYMEEKHK VLP+NF+KILALQLKNS A+GKL KI+ASY
Sbjct: 61  MIKEALLTLNEKSGSSPYAIAKYMEEKHKAVLPSNFKKILALQLKNSAARGKLIKIRASY 120

Query: 121 ELSEAGKKDKKASKVAKA--NAEKKTKQART----TRATAGKRKDEAASK-AAKAVKKVV 180
           +LSE+ KK+K  +KV KA    +KK KQ +T    TR T    K EAA K AA A KKV 
Sbjct: 121 KLSESNKKEKGTTKVPKAAKGGDKKPKQPKTANVSTRKTRSVNKAEAAKKPAAGATKKVG 180

Query: 181 A-KKPKRTTPAKPKQPKSIRSPAAKRAKKA 203
           A KK K+TTPAKPKQPKSI+SPAAKR KKA
Sbjct: 181 APKKTKKTTPAKPKQPKSIKSPAAKRTKKA 207

BLAST of Cp4.1LG10g00350 vs. NCBI nr
Match: gi|1009144210|ref|XP_015889674.1| (PREDICTED: histone H1 [Ziziphus jujuba])

HSP 1 Score: 196.1 bits (497), Expect = 6.2e-47
Identity = 129/206 (62.62%), Postives = 159/206 (77.18%), Query Frame = 1

Query: 1   MSSTGEAEVKVPAEDSPSAEVPSAEEPKESEKPVEEKKSRTPRVKKPRQSKVASHPPYFQ 60
           MS  GE +   PA ++P  E P+AEE K++EK V+E+K R  + +KP+Q K ASHPPYFQ
Sbjct: 2   MSVNGEGDA--PAVEAPPVEAPAAEETKKAEKVVKERKPRATKERKPKQLKTASHPPYFQ 61

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120
           MIKEA+ SLNEK+GSSPYAIAK++EEKHK VLPANF+KIL LQLKNS A+GKL KIKASY
Sbjct: 62  MIKEALLSLNEKSGSSPYAIAKFIEEKHKAVLPANFKKILGLQLKNSAARGKLIKIKASY 121

Query: 121 ELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKV--VAKKPK 180
           +LSEAGK D K SKV+K  AEKK KQ + TR+TA  +    ++K  +  KKV   AKK K
Sbjct: 122 KLSEAGKND-KVSKVSKPTAEKKPKQTK-TRSTATTKATTRSAKKPEKTKKVSKPAKKSK 181

Query: 181 RTTPAKPKQPKSIRSPAAKRAKKAVA 205
           ++TPAKPK PKSI+SPAAK+AKK+ A
Sbjct: 182 KSTPAKPKPPKSIKSPAAKKAKKSAA 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
H1_SOLPN3.0e-4156.25Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_PEA6.4e-2048.39Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H11_VOLCA8.7e-1739.27Histone H1-I OS=Volvox carteri GN=H1-I PE=2 SV=3[more]
H1_WHEAT3.3e-1643.28Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H11_ARATH9.6e-1641.87Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KJB6_CUCSA3.1e-6982.52Histone H1 OS=Cucumis sativus GN=Csa_6G505280 PE=3 SV=1[more]
W9SN28_9ROSA1.1e-4761.68Histone H1 OS=Morus notabilis GN=L484_026707 PE=3 SV=1[more]
B9SZV0_RICCO1.9e-4764.29Histone h1/h5, putative OS=Ricinus communis GN=RCOM_0292320 PE=3 SV=1[more]
Q9SWA4_TOBAC1.3e-4661.06Histone H1C OS=Nicotiana tabacum GN=H1c PE=2 SV=1[more]
M5W3I6_PRUPE2.1e-4662.44Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011941mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G18050.11.7e-2650.29 histone H1-3[more]
AT1G06760.15.4e-1741.87 winged-helix DNA-binding transcription factor family protein[more]
AT2G30620.12.2e-1038.03 winged-helix DNA-binding transcription factor family protein[more]
Match NameE-valueIdentityDescription
gi|449434180|ref|XP_004134874.1|4.4e-6982.52PREDICTED: histone H1 [Cucumis sativus][more]
gi|659080456|ref|XP_008440801.1|4.9e-6882.13PREDICTED: histone H1 [Cucumis melo][more]
gi|703163539|ref|XP_010113375.1|1.6e-4761.68Histone H1 [Morus notabilis][more]
gi|255581422|ref|XP_002531519.1|2.8e-4764.29PREDICTED: histone H1 [Ricinus communis][more]
gi|1009144210|ref|XP_015889674.1|6.2e-4762.62PREDICTED: histone H1 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011991Winged helix-turn-helix DNA-binding domain
IPR005819Histone_H5
IPR005818Histone_H1/H5_H15
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009414 response to water deprivation
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0031492 nucleosomal DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g00350.1Cp4.1LG10g00350.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005818Linker histone H1/H5, domain H15PFAMPF00538Linker_histonecoord: 55..117
score: 2.9
IPR005818Linker histone H1/H5, domain H15SMARTSM00526h15plus2coord: 52..119
score: 4.5
IPR005818Linker histone H1/H5, domain H15PROFILEPS51504H15coord: 54..124
score: 28
IPR005819Histone H5PRINTSPR00624HISTONEH5coord: 145..159
score: 2.7E-6coord: 68..85
score: 2.7E-6coord: 41..62
score: 2.7E-6coord: 177..194
score: 2.
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 51..130
score: 8.2
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 53..133
score: 4.24
NoneNo IPR availablePANTHERPTHR11467HISTONE H1/H5coord: 1..204
score: 1.7
NoneNo IPR availablePANTHERPTHR11467:SF50HISTONE H1coord: 1..204
score: 1.7

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g00350Melon (DHL92) v3.6.1cpemedB068
Cp4.1LG10g00350Melon (DHL92) v3.6.1cpemedB073
Cp4.1LG10g00350Silver-seed gourdcarcpeB0913
Cp4.1LG10g00350Silver-seed gourdcarcpeB1064
Cp4.1LG10g00350Silver-seed gourdcarcpeB1350
Cp4.1LG10g00350Cucumber (Chinese Long) v3cpecucB0061
Cp4.1LG10g00350Cucumber (Chinese Long) v3cpecucB0062
Cp4.1LG10g00350Cucumber (Chinese Long) v3cpecucB0071
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB061
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB066
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB096
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB100
Cp4.1LG10g00350Cucurbita pepo (Zucchini)cpecpeB103
Cp4.1LG10g00350Cucumber (Gy14) v1cgycpeB0876
Cp4.1LG10g00350Cucurbita maxima (Rimu)cmacpeB170
Cp4.1LG10g00350Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g00350Cucurbita moschata (Rifu)cmocpeB003
Cp4.1LG10g00350Cucurbita moschata (Rifu)cmocpeB146
Cp4.1LG10g00350Cucurbita moschata (Rifu)cmocpeB419
Cp4.1LG10g00350Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g00350Wild cucumber (PI 183967)cpecpiB053
Cp4.1LG10g00350Wild cucumber (PI 183967)cpecpiB061
Cp4.1LG10g00350Cucumber (Chinese Long) v2cpecuB059
Cp4.1LG10g00350Cucumber (Chinese Long) v2cpecuB065
Cp4.1LG10g00350Bottle gourd (USVL1VR-Ls)cpelsiB065
Cp4.1LG10g00350Bottle gourd (USVL1VR-Ls)cpelsiB069
Cp4.1LG10g00350Watermelon (97103) v1cpewmB072
Cp4.1LG10g00350Melon (DHL92) v3.5.1cpemeB052
Cp4.1LG10g00350Cucumber (Gy14) v2cgybcpeB155