Carg00602 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00602
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Histone H1
Location	Cucurbita_argyrosperma_scaffold_014 : 538254 .. 539733 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTTTCTACAACTTGGCTATCCATGTCCACTTGAATTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCGGTGTATTAATTCGTCTCGAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGTGGAGGATGCTCCTTCTGTGGAGGTTCCGTCTGCGGAGGAGACGAAGGAGGCCGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTTCGAGGGAGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGGTAATTTAGTCCGTTGATGTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATGTTTTGATTATAGCGCGACGAGTTTGATTCTGTAGATCTTTTGATTATAGCGTGACGAGTTTGATTCTGTTGATCTTGATTGAATCGAGTCTTTATTCTGATGAATTGCGATGTATTGGATATGATTTTGTTGATTTTGCAGATGATCAAGGAAGCAATCACATCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACCGCTAAAGGAAAGTTAAGGAAGGTCAAGGCTTCGTATGAGCTATCCGAAGCAGGAAAGAAAGACAAGAAGGCTTCAAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACCAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGTTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTGCGATTCACACAGATCACCGTCAAAGAACTGGTTGAATCTCAGCCTTTCGATTCGAGACACATGGCTCAGGATTGGGGATGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTGTGCGTCGCGTCGTTTGATTTGAATCAATCCCATCCGTGGCCTATGGTTTTGATTTTCTCCCTCCTGATTTAGGATTTTTTTTCTTTAATCCCGAGTCTTTTATGATATCTTT

mRNA sequence

GGATTTCGATCTCGTAATAACGACCCGTTTTCCTCCACGTGTGCGCTCCAGATCAATTTTTTTCTACAACTTGGCTATCCATGTCCACTTGAATTGGCCAATCAGAGTTCGTACTTCCCTCCACATCCAGATTCTTCTTCCCCTATAAATTCCTCGGTGTATTAATTCGTCTCGAGCATATTCGTTAAGCGTTTGGTTCTCGTTCTGTAATTTGTGGAAATTTTGATCATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGTGGAGGATGCTCCTTCTGTGGAGGTTCCGTCTGCGGAGGAGACGAAGGAGGCCGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTTCGAGGGAGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACATCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACCGCTAAAGGAAAGTTAAGGAAGGTCAAGGCTTCGTATGAGCTATCCGAAGCAGGAAAGAAAGACAAGAAGGCTTCAAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACCAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGAACGTAGAATCGAACAACTTGTCTTCGATTTCTCTCTTGTGAATATCTTGCCTCCGAATTACGATCATGTAGTTTGTAAATTCTTGGTTCTATGATCTTGTAGTCTTTGCTTCAACTGCAATGGAAATAAATCCTTTCTTGTTCAGAAATTCAATAAACTGAAATAGAAGAAACAGACATTCGCTTCTGGATGTTTCTCTTGCGATTCACACAGATCACCGTCAAAGAACTGGTTGAATCTCAGCCTTTCGATTCGAGACACATGGCTCAGGATTGGGGATGAATCAGAGAGAAGAATCTCAATGGAAACCCACAGATTTACATCATTGTGCGTCGCGTCGTTTGATTTGAATCAATCCCATCCGTGGCCTATGGTTTTGATTTTCTCCCTCCTGATTTAGGATTTTTTTTCTTTAATCCCGAGTCTTTTATGATATCTTT

Coding sequence (CDS)

ATGTCGTCGACTGGGGAGGCTGAAGTGAAAGTTCCGGTGGAGGATGCTCCTTCTGTGGAGGTTCCGTCTGCGGAGGAGACGAAGGAGGCCGAGAAGCCGGTGGAGGAGAAGAAATCCAGGACTTCGAGGGAGAAGAAGCCTAGGCAGTCTAAGGTGGCTTCACATCCACCGTACTTTCAGATGATCAAGGAAGCAATCACATCGCTCAACGAGAAGAATGGATCGAGTCCGTACGCCATAGCCAAATACATGGAGGAGAAACACAAGGAAGTTCTTCCAGCAAATTTCAGGAAAATCTTGGCGCTACAATTGAAGAATTCGACCGCTAAAGGAAAGTTAAGGAAGGTCAAGGCTTCGTATGAGCTATCCGAAGCAGGAAAGAAAGACAAGAAGGCTTCAAAGGTCGCAAAAGCGAATGCAGAGAAGAAAACCAAACAGGCAAGAACTACTAGAGCTACTGCAGGGAAGAGGAAGGACGAGGCAGCAAGTAAGGCGGCGAAGGCGGTGAAGAAGGTTGTTGCAAAGAAACCGAAAAGAACTACTCCGGCGAAGCCAAAGCAGCCGAAATCAATTAGGTCCCCTGCTGCTAAGAGGGCTAAGAAAGCGGTTGCGTGA

Protein sequence

MSSTGEAEVKVPVEDAPSVEVPSAEETKEAEKPVEEKKSRTSREKKPRQSKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASYELSEAGKKDKKASKVAKANAEKKTKQARTTRATAGKRKDEAASKAAKAVKKVVAKKPKRTTPAKPKQPKSIRSPAAKRAKKAVA

Homology

[Close]

BLAST of Carg00602 vs. NCBI nr
Match: XP_023544256.1 (histone H1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.5 bits (397), Expect = 4.7e-35
Identity = 114/125 (91.20%), Postives = 116/125 (92.80%), Query Frame = 0


Query: 1   MSSTGEAEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYFQ 60
           MSSTGEAEVKVP ED+      XXXXXXXXXXXXXXXXXXXXXXXXXXX  VASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK+KASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEA 126
           ELSEA
Sbjct: 121 ELSEA 125

[Close]

BLAST of Carg00602 vs. NCBI nr
Match: XP_022950733.1 (histone H1 [Cucurbita moschata])

HSP 1 Score: 154.5 bits (389), Expect = 4.0e-34
Identity = 113/125 (90.40%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSSTGEAEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYFQ 60
           MSSTGEAEVKVP ED       XXXXXXXXXXXXXXXXXXXXXXXXXXX  VASHPPYFQ
Sbjct: 1   MSSTGEAEVKVPAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120
           MI EAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK+KASY
Sbjct: 61  MIMEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEA 126
           ELSEA
Sbjct: 121 ELSEA 125

[Close]

BLAST of Carg00602 vs. NCBI nr
Match: XP_022979052.1 (histone H1 [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 8.9e-34
Identity = 112/125 (89.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSSTGEAEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYFQ 60
           MSSTGE EVKVP ED       XXXXXXXXXXXXXXXXXXXXXXXXXXX   ASHPPYFQ
Sbjct: 1   MSSTGETEVKVPAEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120
           MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK+KASY
Sbjct: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKIKASY 120

Query: 121 ELSEA 126
           ELSEA
Sbjct: 121 ELSEA 125

[Close]

BLAST of Carg00602 vs. NCBI nr
Match: XP_004134874.1 (PREDICTED: histone H1 [Cucumis sativus] >KGN48899.1 Histone H1 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF 60
           MSSTGE AEVKVP ED       XXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL K+KAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YELSE 125
           Y+LSE
Sbjct: 121 YKLSE 125

[Close]

BLAST of Carg00602 vs. NCBI nr
Match: XP_022132486.1 (histone H1 [Momordica charantia])

HSP 1 Score: 138.3 bits (347), Expect = 3.0e-29
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MSSTGEAEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYFQ 60
           MSSTGE +V+VPV         XXXXXXXXXXXXXXXXXXXXXXXXXXX   ASHPPYFQ
Sbjct: 1   MSSTGEGDVEVPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHPPYFQ 60

Query: 61  MIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKASY 120
           MIKEAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTA+GKL K+KASY
Sbjct: 61  MIKEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTARGKLAKIKASY 120

Query: 121 ELSEA 126
           +LSEA
Sbjct: 121 KLSEA 125

[Close]

BLAST of Carg00602 vs. TAIR10
Match: AT2G18050.1 (histone H1-3)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-24
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 51  KVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAK 110
           K  +HPPYFQMIKEA+  L EKNGSSPYAIAK +EEKHK +LP +FRK L+LQLKNS AK
Sbjct: 20  KTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAK 79

Query: 111 GKLRKVKASYELSE 125
           GKL K++ASY+LS+
Sbjct: 80  GKLVKIRASYKLSD 93

[Close]

BLAST of Carg00602 vs. TAIR10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-13
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 56  PPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK 115
           P Y +MIK+AI +L E+ GSS YAI K++EEKHK  LP  FRK+L + LK   A  KL K
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVK 122

Query: 116 VKASYELSEA 126
           VKAS+++  A
Sbjct: 123 VKASFKIPSA 131

[Close]

BLAST of Carg00602 vs. TAIR10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 52  VASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKG 111
           V+SHP Y +MIK+AI +L E+ GSS YAI K++EEK KE LP  FRK+L L LK   A G
Sbjct: 59  VSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKE-LPPTFRKLLLLNLKRLVASG 118

Query: 112 KLRK 116
           KL K
Sbjct: 119 KLVK 121

[Close]

BLAST of Carg00602 vs. TAIR10
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-06
Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 54  SHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKL 113
           S PPY QMI EAI SLN+KNG +   IAK++E   ++ LP +   +L+  L      G+L
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIEST-QQTLPPSHMTLLSYHLNQMKKTGQL 81

Query: 114 RKVKASY 121
             VK +Y
Sbjct: 82  IMVKNNY 87

[Close]

BLAST of Carg00602 vs. TAIR10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-06
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 55  HPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLR 114
           HPPY +MI  AI +LNE +GSS  AI++Y+E  +  +  A+   +L   LK     G L 
Sbjct: 65  HPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAH-AALLTHHLKTLKTSGVLS 124

Query: 115 KVKASYELS 124
            VK SY+++
Sbjct: 125 MVKKSYKIA 132

[Close]

BLAST of Carg00602 vs. Swiss-Prot
Match: sp|P40267|H1_SOLPN (Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-27
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 0


Query: 50  SKVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTA 109
           +K  +HPPYFQMIKEA+ +LNEK GSSPYA+AKYME+KHK+ LPANFRKIL LQLKNS A
Sbjct: 44  AKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAA 103

Query: 110 KGKLRKVKASYELSEA 126
           KGKL K+KASY+LSEA
Sbjct: 104 KGKLIKIKASYKLSEA 119

[Close]

BLAST of Carg00602 vs. Swiss-Prot
Match: sp|P08283|H1_PEA (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.8e-17
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 53  ASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGK 112
           ASHP Y +MIK+AI SL EKNGSS YAIAK++EEK K+ LPANF+K+L   LK + A GK
Sbjct: 60  ASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQ-LPANFKKLLLQNLKKNVASGK 119

Query: 113 LRKVKASYELSEA 126
           L KVK S++LS A
Sbjct: 120 LIKVKGSFKLSAA 131

[Close]

BLAST of Carg00602 vs. Swiss-Prot
Match: sp|P23444|H1_MAIZE (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-15
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 54  SHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKL 113
           +H PY +M+ EAITSL E+ GSS YAIAK++E+KHK  LP NFRK+L +QLK   A GKL
Sbjct: 49  THLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKL 108

Query: 114 RKVKASY 121
            KVK SY
Sbjct: 109 TKVKNSY 115

[Close]

BLAST of Carg00602 vs. Swiss-Prot
Match: sp|P26569|H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 56  PPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRK 115
           P Y +MIK+AI +L E+ GSS YAI K++EEKHK  LP  FRK+L + LK   A  KL K
Sbjct: 63  PTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKS-LPPTFRKLLLVNLKRLVASEKLVK 122

Query: 116 VKASYELSEA 126
           VKAS+++  A
Sbjct: 123 VKASFKIPSA 131

[Close]

BLAST of Carg00602 vs. Swiss-Prot
Match: sp|P27806|H1_WHEAT (Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-11
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 54  SHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKL 113
           +HP Y +M+ EAI +L E++GSS  AI K++E+KHK  LPANFRKIL  Q+K   A GKL
Sbjct: 54  AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKL 113

[Close]

BLAST of Carg00602 vs. TrEMBL
Match: tr|A0A0A0KJB6|A0A0A0KJB6_CUCSA (Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 110/125 (88.00%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPVEDAPSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF 60
           MSSTGE AEVKVP ED       XXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF
Sbjct: 1   MSSTGEAAEVKVPAEDVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPYF 60

Query: 61  QMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKAS 120
           QMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL K+KAS
Sbjct: 61  QMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKAS 120

Query: 121 YELSE 125
           Y+LSE
Sbjct: 121 YKLSE 125

[Close]

BLAST of Carg00602 vs. TrEMBL
Match: tr|A0A1S3B1Z2|A0A1S3B1Z2_CUCME (histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.6e-29
Identity = 108/126 (85.71%), Postives = 112/126 (88.89%), Query Frame = 0


Query: 1   MSSTGE-AEVKVPVEDA-PSVEVPXXXXXXXXXXXXXXXXXXXXXXXXXXXSKVASHPPY 60
           M+STGE AEVKVP ED        XXXXXXXXXXXXXXXXXXXXXXXXXXX KVASHPPY
Sbjct: 1   MTSTGEAAEVKVPAEDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVASHPPY 60

Query: 61  FQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAKGKLRKVKA 120
           FQMI EAI+SLNEKNGSSPYAIAKYMEEKHK VLPANFRKILALQLKNSTAKGKL K+KA
Sbjct: 61  FQMINEAISSLNEKNGSSPYAIAKYMEEKHKAVLPANFRKILALQLKNSTAKGKLTKIKA 120

Query: 121 SYELSE 125
           SY+LSE
Sbjct: 121 SYKLSE 126

[Close]

BLAST of Carg00602 vs. TrEMBL
Match: tr|A0A1P8NTM9|A0A1P8NTM9_EUCGL (H1.3 (Fragment) OS=Eucalyptus globulus OX=34317 PE=2 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.3e-27
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 51  KVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAK 110
           K ASHPPYFQMIKEA+ +LNEK+GSSPYAIAKYME+KHK VLPANFRKILALQLKNS AK
Sbjct: 1   KTASHPPYFQMIKEAVLALNEKSGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAK 60

Query: 111 GKLRKVKASYELSEA 126
           GKL KVKASY+LSEA
Sbjct: 61  GKLIKVKASYKLSEA 75

[Close]

BLAST of Carg00602 vs. TrEMBL
Match: tr|A0A059ASJ8|A0A059ASJ8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I02364 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 5.3e-27
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 51  KVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAK 110
           K ASHPPYFQMIKEA+ +LNEK+GSSPYAIAKYME+KHK VLPANFRKILALQLKNS AK
Sbjct: 62  KTASHPPYFQMIKEAVLALNEKSGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAK 121

Query: 111 GKLRKVKASYELSEA 126
           GKL KVKASY+LSEA
Sbjct: 122 GKLIKVKASYKLSEA 136

[Close]

BLAST of Carg00602 vs. TrEMBL
Match: tr|A0A1P8NTM7|A0A1P8NTM7_EUCGU (H1.3 OS=Eucalyptus gunnii OX=3933 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.5e-26
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 51  KVASHPPYFQMIKEAITSLNEKNGSSPYAIAKYMEEKHKEVLPANFRKILALQLKNSTAK 110
           K ASHPPYFQMIKEA+ +LNEK+GSSPYAIAKYME+KHK VLPANFRKILALQLKNS AK
Sbjct: 60  KTASHPPYFQMIKEAVLALNEKSGSSPYAIAKYMEDKHKAVLPANFRKILALQLKNSAAK 119

Query: 111 GKLRKVKASYELSEA 126
           GKL KVKASY+LS A
Sbjct: 120 GKLIKVKASYKLSGA 134

The following BLAST results are available for this feature:

BLAST of Carg00602 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544256.1	4.7e-35	91.20	histone H1 [Cucurbita pepo subsp. pepo]	[more]
XP_022950733.1	4.0e-34	90.40	histone H1 [Cucurbita moschata]	[more]
XP_022979052.1	8.9e-34	89.60	histone H1 [Cucurbita maxima]	[more]
XP_004134874.1	1.9e-31	88.00	PREDICTED: histone H1 [Cucumis sativus] >KGN48899.1 Histone H1 [Cucumis sativus]	[more]
XP_022132486.1	3.0e-29	83.20	histone H1 [Momordica charantia]	[more]

BLAST of Carg00602 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18050.1	2.1e-24	71.62	histone H1-3	[more]
AT2G30620.1	8.1e-13	54.29	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	1.1e-12	59.38	winged-helix DNA-binding transcription factor family protein	[more]
AT1G14900.1	4.3e-06	43.28	high mobility group A	[more]
AT3G18035.1	7.3e-06	40.58	winged-helix DNA-binding transcription factor family protein	[more]

BLAST of Carg00602 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P40267\|H1_SOLPN	2.5e-27	77.63	Histone H1 OS=Solanum pennellii OX=28526 PE=2 SV=1	[more]
sp\|P08283\|H1_PEA	6.8e-17	64.38	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
sp\|P23444\|H1_MAIZE	1.7e-15	62.69	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
sp\|P26569\|H12_ARATH	1.5e-11	54.29	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
sp\|P27806\|H1_WHEAT	1.5e-11	56.67	Histone H1 OS=Triticum aestivum OX=4565 PE=2 SV=2	[more]

BLAST of Carg00602 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJB6\|A0A0A0KJB6_CUCSA	1.2e-31	88.00	Histone H1 OS=Cucumis sativus OX=3659 GN=Csa_6G505280 PE=3 SV=1	[more]
tr\|A0A1S3B1Z2\|A0A1S3B1Z2_CUCME	2.6e-29	85.71	histone H1 OS=Cucumis melo OX=3656 GN=LOC103485111 PE=3 SV=1	[more]
tr\|A0A1P8NTM9\|A0A1P8NTM9_EUCGL	5.3e-27	86.67	H1.3 (Fragment) OS=Eucalyptus globulus OX=34317 PE=2 SV=1	[more]
tr\|A0A059ASJ8\|A0A059ASJ8_EUCGR	5.3e-27	86.67	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I02364 PE=3 SV...	[more]
tr\|A0A1P8NTM7\|A0A1P8NTM7_EUCGU	3.5e-26	85.33	H1.3 OS=Eucalyptus gunnii OX=3933 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus
GO:0000786	nucleosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006334	nucleosome assembly

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR036388	WH-like_DNA-bd_sf
IPR005818	Histone_H1/H5_H15
IPR005819	Histone_H5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00602-RA	Carg00602-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Histone H5	PRINTS	PR00624	HISTONEH5	coord: 145..159 score: 24.44 coord: 68..85 score: 33.33 coord: 41..62 score: 29.8 coord: 177..194 score: 30.86
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 52..119 e-value: 9.0E-31 score: 118.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 55..117 e-value: 1.6E-17 score: 63.5
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 54..124 score: 28.741
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 53..134 e-value: 3.60364E-19 score: 78.0467
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.10		coord: 50..147 e-value: 1.4E-16 score: 62.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..204
None	No IPR available	PANTHER	PTHR11467:SF50	HISTONE H1	coord: 12..203
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 12..203
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	SSF46785	"Winged helix" DNA-binding domain	coord: 53..133

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00602	Cla014270	Watermelon (97103) v1	carwmB0407
Carg00602	Csa6G505280	Cucumber (Chinese Long) v2	carcuB0441
Carg00602	MELO3C007889	Melon (DHL92) v3.5.1	carmeB0414
Carg00602	ClCG01G020160	Watermelon (Charleston Gray)	carwcgB0397
Carg00602	CSPI06G31630	Wild cucumber (PI 183967)	carcpiB0446
Carg00602	Cucsa.043430	Cucumber (Gy14) v1	carcgyB0466
Carg00602	CmaCh03G006980	Cucurbita maxima (Rimu)	carcmaB0567
Carg00602	CmoCh03G007250	Cucurbita moschata (Rifu)	carcmoB0551
Carg00602	Lsi01G006170	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00602	Cp4.1LG10g00350	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00602	CsGy6G031150	Cucumber (Gy14) v2	carcgybB0418
Carg00602	MELO3C007889.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00602	CsaV3_6G046960	Cucumber (Chinese Long) v3	carcucB0442
Carg00602	Cla97C01G019560	Watermelon (97103) v2	carwmbB0426
Carg00602	Bhi03G000655	Wax gourd	carwgoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00602	Silver-seed gourd	carcarB121
Carg00602	Silver-seed gourd	carcarB425
Carg00602	Silver-seed gourd	carcarB426
Carg00602	Silver-seed gourd	carcarB430
Carg00602	Cucumber (Gy14) v2	carcgybB0412
Carg00602	Cucurbita maxima (Rimu)	carcmaB0571
Carg00602	Cucurbita moschata (Rifu)	carcmoB0541
Carg00602	Cucurbita moschata (Rifu)	carcmoB0543
Carg00602	Cucurbita moschata (Rifu)	carcmoB0554
Carg00602	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00602	Cucurbita pepo (Zucchini)	carcpeB0569
Carg00602	Cucurbita pepo (Zucchini)	carcpeB0572
Carg00602	Wild cucumber (PI 183967)	carcpiB0439
Carg00602	Cucumber (Chinese Long) v2	carcuB0434
Carg00602	Cucumber (Chinese Long) v3	carcucB0436
Carg00602	Bottle gourd (USVL1VR-Ls)	carlsiB371
Carg00602	Melon (DHL92) v3.5.1	carmeB0404
Carg00602	Melon (DHL92) v3.6.1	carmedB0408
Carg00602	Watermelon (Charleston Gray)	carwcgB0401
Carg00602	Watermelon (97103) v2	carwmbB0432