Cp4.1LG09g04680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g04680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPentatricopeptide repeat-containing protein
LocationCp4.1LG09 : 3077575 .. 3078958 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCGCAGCTACTTCCAGTCTCCTCTCTTCCATCCATCGCCATAGCCAAAGCTCACAATCGAACTCCATTAAAGCCAAGCTCCATTTCCATCTCCTCATCTCCTCTTCCATCTCACACTCTTTCAGAAAGAACGCACATCCCCTCCCATGTCTACAGGCATCCAGCCGCCGTGCTTCTCGAGCTCTGCACTTCCATGAAAGAGCTCCACCAAATCCTCCCACTGGTCATAAAAAATGGCCTCTACAACGAGCATTTATTTCAAACCAAGCTCGTCAGCTTGTTTTCCAAGTATGGCAGCATCAACGAGGCCGCTCGTGTTTTCGAGCCGATTGAGGAGAAGATCGACGTTCTCTACCACACGATGCTAAAAGGATATGCGAAGAATTCGTCGTTGGAGACTGCTCTTGCTTTTCTTTGTCGAATGAGGTACGATGATGTTAAGCCTGTTGTGTATAATTTTACTTATTTGCTTAAGGTTTGTGGCGATAATGCGGATTTGAAGAGGGGTAGGGAGATTCATGGGAATCTGATTAAGAATTCGTTTGGGGCGAATGTATTTGCAATGACTGGTGTTGTGAACATGTATGCGAAGTGTAGGCAGATTGACGATGCATACAAGATGTTCGACAGAATGCCTGTGAGAGATTTGGTGTCTTGGAATACGATTATTACAGGGTTTTCCCAAAATGGGTTTGCAAATAAGGCCCTGGAGTTGGTTTTGAGTATGCAAGATGAAGGCCAAAGGCCTGATTCGATTACATTGGTTACTGTTCTTCCTGCTGCTGCTGATATTGGATCGTTAATGGTGGGGAAATCTATTCATGGGTATGCCATTAGAGCTGGATTCTCAAAGCTTGTTAATATTTCAACTGCTTTGGTTGATATGTATTCAAAATGTGGATCAGTTGATACAGCTAGATTGATTTTTGATGGAATGGAACAGAAGACTGTTGTGTCATGGAATTCCATGATGGCTGGATATGTGCAGAGTGGTGAACCAGAGATGGCTATTGCAATCTTTGAGAAGATGTTGGATGAAGGAATAGAGCCTACCAATGTAACCATTATGGAAGCGTTACATGCCTGCGCCGATTTGGGTGATTTCGAAATGGGGAAGTTCGTTCATAAGTTCGTCGATAAGTTAAATCTTGGTTCGGACGTATCCATTATGAACTCATTGATATCTATGTATTCGAAGTGTAATCGAGTCGACATTGCTTCTGATATCTTCAAGAACTTACATCGAAAAACTCTCGTCTCATGGAATGCAATGATTTTGGGTTATACTCAAAATGGAAGAGTGAGTGAAGCTTTGAATTGTTTTTGTGAGATGCAATCTTTAGGTATAAAATCTGATTCATTTACAGTGGTTAGTGTGA

mRNA sequence

ATGAGCTCGCAGCTACTTCCAGTCTCCTCTCTTCCATCCATCGCCATAGCCAAAGCTCACAATCGAACTCCATTAAAGCCAAGCTCCATTTCCATCTCCTCATCTCCTCTTCCATCTCACACTCTTTCAGAAAGAACGCACATCCCCTCCCATGTCTACAGGCATCCAGCCGCCGTGCTTCTCGAGCTCTGCACTTCCATGAAAGAGCTCCACCAAATCCTCCCACTGGTCATAAAAAATGGCCTCTACAACGAGCATTTATTTCAAACCAAGCTCGTCAGCTTGTTTTCCAAGTATGGCAGCATCAACGAGGCCGCTCGTGTTTTCGAGCCGATTGAGGAGAAGATCGACGTTCTCTACCACACGATGCTAAAAGGATATGCGAAGAATTCGTCGTTGGAGACTGCTCTTGCTTTTCTTTGTCGAATGAGGTACGATGATGTTAAGCCTGTTGTGTATAATTTTACTTATTTGCTTAAGGTTTGTGGCGATAATGCGGATTTGAAGAGGGGTAGGGAGATTCATGGGAATCTGATTAAGAATTCGTTTGGGGCGAATGTATTTGCAATGACTGGTGTTGTGAACATGTATGCGAAGTGTAGGCAGATTGACGATGCATACAAGATGTTCGACAGAATGCCTGTGAGAGATTTGGTGTCTTGGAATACGATTATTACAGGGTTTTCCCAAAATGGGTTTGCAAATAAGGCCCTGGAGTTGGTTTTGAGTATGCAAGATGAAGGCCAAAGGCCTGATTCGATTACATTGGTTACTGTTCTTCCTGCTGCTGCTGATATTGGATCGTTAATGGTGGGGAAATCTATTCATGGGTATGCCATTAGAGCTGGATTCTCAAAGCTTGTTAATATTTCAACTGCTTTGGTTGATATGTATTCAAAATGTGGATCAGTTGATACAGCTAGATTGATTTTTGATGGAATGGAACAGAAGACTGTTGTGTCATGGAATTCCATGATGGCTGGATATGTGCAGAGTGGTGAACCAGAGATGGCTATTGCAATCTTTGAGAAGATGTTGGATGAAGGAATAGAGCCTACCAATGTAACCATTATGGAAGCGTTACATGCCTGCGCCGATTTGGGTGATTTCGAAATGGGGAAGTTCGTTCATAAGTTCGTCGATAAGTTAAATCTTGGTTCGGACGTATCCATTATGAACTCATTGATATCTATGTATTCGAAGTGTAATCGAGTCGACATTGCTTCTGATATCTTCAAGAACTTACATCGAAAAACTCTCGTCTCATGGAATGCAATGATTTTGGGTTATACTCAAAATGGAAGATGGTTAGTGTGA

Coding sequence (CDS)

ATGAGCTCGCAGCTACTTCCAGTCTCCTCTCTTCCATCCATCGCCATAGCCAAAGCTCACAATCGAACTCCATTAAAGCCAAGCTCCATTTCCATCTCCTCATCTCCTCTTCCATCTCACACTCTTTCAGAAAGAACGCACATCCCCTCCCATGTCTACAGGCATCCAGCCGCCGTGCTTCTCGAGCTCTGCACTTCCATGAAAGAGCTCCACCAAATCCTCCCACTGGTCATAAAAAATGGCCTCTACAACGAGCATTTATTTCAAACCAAGCTCGTCAGCTTGTTTTCCAAGTATGGCAGCATCAACGAGGCCGCTCGTGTTTTCGAGCCGATTGAGGAGAAGATCGACGTTCTCTACCACACGATGCTAAAAGGATATGCGAAGAATTCGTCGTTGGAGACTGCTCTTGCTTTTCTTTGTCGAATGAGGTACGATGATGTTAAGCCTGTTGTGTATAATTTTACTTATTTGCTTAAGGTTTGTGGCGATAATGCGGATTTGAAGAGGGGTAGGGAGATTCATGGGAATCTGATTAAGAATTCGTTTGGGGCGAATGTATTTGCAATGACTGGTGTTGTGAACATGTATGCGAAGTGTAGGCAGATTGACGATGCATACAAGATGTTCGACAGAATGCCTGTGAGAGATTTGGTGTCTTGGAATACGATTATTACAGGGTTTTCCCAAAATGGGTTTGCAAATAAGGCCCTGGAGTTGGTTTTGAGTATGCAAGATGAAGGCCAAAGGCCTGATTCGATTACATTGGTTACTGTTCTTCCTGCTGCTGCTGATATTGGATCGTTAATGGTGGGGAAATCTATTCATGGGTATGCCATTAGAGCTGGATTCTCAAAGCTTGTTAATATTTCAACTGCTTTGGTTGATATGTATTCAAAATGTGGATCAGTTGATACAGCTAGATTGATTTTTGATGGAATGGAACAGAAGACTGTTGTGTCATGGAATTCCATGATGGCTGGATATGTGCAGAGTGGTGAACCAGAGATGGCTATTGCAATCTTTGAGAAGATGTTGGATGAAGGAATAGAGCCTACCAATGTAACCATTATGGAAGCGTTACATGCCTGCGCCGATTTGGGTGATTTCGAAATGGGGAAGTTCGTTCATAAGTTCGTCGATAAGTTAAATCTTGGTTCGGACGTATCCATTATGAACTCATTGATATCTATGTATTCGAAGTGTAATCGAGTCGACATTGCTTCTGATATCTTCAAGAACTTACATCGAAAAACTCTCGTCTCATGGAATGCAATGATTTTGGGTTATACTCAAAATGGAAGATGGTTAGTGTGA

Protein sequence

MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMILGYTQNGRWLV
Homology
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BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 550.1 bits (1416), Expect = 2.3e-155
Identity = 269/435 (61.84%), Postives = 339/435 (77.93%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSSQL+  S++P I    + +R                 H LSER +IP++VY HPAA+L
Sbjct: 1   MSSQLVQFSTVPQIPNPPSRHR-----------------HFLSERNYIPANVYEHPAALL 60

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LE C+S+KEL QILPLV KNGLY EH FQTKLVSLF +YGS++EAARVFEPI+ K++VLY
Sbjct: 61  LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 120

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKG+AK S L+ AL F  RMRYDDV+PVVYNFTYLLKVCGD A+L+ G+EIHG L+K
Sbjct: 121 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 180

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           + F  ++FAMTG+ NMYAKCRQ+++A K+FDRMP RDLVSWNTI+ G+SQNG A  ALE+
Sbjct: 181 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 240

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           V SM +E  +P  IT+V+VLPA + +  + VGK IHGYA+R+GF  LVNISTALVDMY+K
Sbjct: 241 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 300

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           CGS++TAR +FDGM ++ VVSWNSM+  YVQ+  P+ A+ IF+KMLDEG++PT+V++M A
Sbjct: 301 CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGA 360

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E G+F+HK   +L L  +VS++NSLISMY KC  VD A+ +F  L  +TL
Sbjct: 361 LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 418

Query: 421 VSWNAMILGYTQNGR 436
           VSWNAMILG+ QNGR
Sbjct: 421 VSWNAMILGFAQNGR 418

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BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match: PPR45_ARATH (Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=3 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.6e-66
Identity = 123/344 (35.76%), Postives = 202/344 (58.72%), Query Frame = 1 

Query: 93  VSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYAKNSSLETALAFLCRMRY-DDVKPV 152
           +++F ++G++ +A  VF  + E+    ++ ++ GYAK    + A+    RM +   VKP 
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 153 VYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFD 212
           VY F  +L+ CG   DL RG+E+H ++++  +  ++  +  ++ MY KC  +  A  +FD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 213 RMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMV 272
           RMP RD++SWN +I+G+ +NG  ++ LEL  +M+     PD +TL +V+ A   +G   +
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 273 GKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQ 332
           G+ IH Y I  GF+  +++  +L  MY   GS   A  +F  ME+K +VSW +M++GY  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query: 333 SGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSI 392
           +  P+ AI  +  M  + ++P  +T+   L ACA LGD + G  +HK   K  L S V +
Sbjct: 376 NFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435

Query: 393 MNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMILGYTQNGR 436
            N+LI+MYSKC  +D A DIF N+ RK ++SW ++I G   N R
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNR 479

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BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.7e-63
Identity = 123/380 (32.37%), Postives = 218/380 (57.37%), Query Frame = 1 

Query: 58  AVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKID 117
           A L++  T   +L QI   ++  GL       TKL+   S +G I  A +VF+ +     
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQI 84

Query: 118 VLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGN 177
             ++ +++GY++N+  + AL     M+   V P  + F +LLK C   + L+ GR +H  
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 178 LIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPV--RDLVSWNTIITGFSQNGFAN 237
           + +  F A+VF   G++ +YAKCR++  A  +F+ +P+  R +VSW  I++ ++QNG   
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 238 KALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALV 297
           +ALE+   M+    +PD + LV+VL A   +  L  G+SIH   ++ G     ++  +L 
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 298 DMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNV 357
            MY+KCG V TA+++FD M+   ++ WN+M++GY ++G    AI +F +M+++ + P  +
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324

Query: 358 TIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNL 417
           +I  A+ ACA +G  E  + ++++V + +   DV I ++LI M++KC  V+ A  +F   
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384

Query: 418 HRKTLVSWNAMILGYTQNGR 436
             + +V W+AMI+GY  +GR
Sbjct: 385 LDRDVVVWSAMIVGYGLHGR 404

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BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 9.4e-61
Identity = 119/377 (31.56%), Postives = 211/377 (55.97%), Query Frame = 1 

Query: 60  LLELCT---SMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKI 119
           +L+LC    S+K+  ++   +  NG   +    +KL  +++  G + EA+RVF+ ++ + 
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159

Query: 120 DVLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHG 179
            + ++ ++   AK+     ++    +M    V+   Y F+ + K       +  G ++HG
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219

Query: 180 NLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANK 239
            ++K+ FG        +V  Y K +++D A K+FD M  RD++SWN+II G+  NG A K
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 240 ALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVD 299
            L + + M   G   D  T+V+V    AD   + +G+++H   ++A FS+       L+D
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339

Query: 300 MYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVT 359
           MYSKCG +D+A+ +F  M  ++VVS+ SM+AGY + G    A+ +FE+M +EGI P   T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 360 IMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLH 419
           +   L+ CA     + GK VH+++ + +LG D+ + N+L+ MY+KC  +  A  +F  + 
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459

Query: 420 RKTLVSWNAMILGYTQN 434
            K ++SWN +I GY++N
Sbjct: 460 VKDIISWNTIIGGYSKN 476

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BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 233.8 bits (595), Expect = 3.6e-60
Identity = 122/390 (31.28%), Postives = 221/390 (56.67%), Query Frame = 1 

Query: 56  PAAVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFS---KYGSINEAARVFEPI 115
           P    LE C S+ EL+Q+  L+IK+ +    +  ++L+   +   +  +++ A  VFE I
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 116 EEKIDVLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGR 175
           +     ++++M++GY+ + + + AL F   M      P  + F Y+LK C    D++ G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 176 EIHGNLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNG 235
            +HG ++K  F  N++  T +++MY  C +++   ++F+ +P  ++V+W ++I+GF  N 
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 236 FANKALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGF-----SKL 295
             + A+E    MQ  G + +   +V +L A      ++ GK  HG+    GF     SK+
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKV 247

Query: 296 ---VNISTALVDMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEK 355
              V ++T+L+DMY+KCG + TAR +FDGM ++T+VSWNS++ GY Q+G+ E A+ +F  
Sbjct: 248 GFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLD 307

Query: 356 MLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNR 415
           MLD GI P  VT +  + A    G  ++G+ +H +V K     D +I+ +L++MY+K   
Sbjct: 308 MLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGD 367

Query: 416 VDIASDIFKNLHRKTLVSWNAMILGYTQNG 435
            + A   F++L +K  ++W  +I+G   +G
Sbjct: 368 AESAKKAFEDLEKKDTIAWTVVIIGLASHG 397

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BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match: A0A0A0KPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1)

HSP 1 Score: 767.7 bits (1981), Expect = 7.7e-219
Identity = 379/427 (88.76%), Postives = 401/427 (93.91%), Query Frame = 1 

Query: 9   SSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMK 68
           SS+P IAI KAHN+TPLK SSI+I SSPLP HTLSER HIPSHVY+HPAAVLLELCTSMK
Sbjct: 4   SSVPPIAIVKAHNQTPLKSSSITIPSSPLPFHTLSERAHIPSHVYKHPAAVLLELCTSMK 63

Query: 69  ELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYA 128
           ELHQI+PLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPI++K+D LYHTMLKGYA
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 129 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVF 188
           KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG+EIHG LI NSF ANVF
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVF 183

Query: 189 AMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEG 248
           AMTGVVNMYAKCRQIDDAYKMFDRMP RDLVSWNTII GFSQNGFA KALELVL MQDEG
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 249 QRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTAR 308
           QRPDSITLVTVLPAAAD+G LMVGKSIHGYAIRAGF+KLVNISTAL DMYSKCGSV+TAR
Sbjct: 244 QRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETAR 303

Query: 309 LIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLG 368
           LIFDGM+QKTVVSWNSMM GYVQ+GEPE AIA+FEKML+EGI+PT VTIMEALHACADLG
Sbjct: 304 LIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLG 363

Query: 369 DFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMIL 428
           D E GKFVHKFVD+LNLGSD+S+MNSLISMYSKC RVDIASDIF NL+ +T VSWNAMIL
Sbjct: 364 DLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMIL 423

Query: 429 GYTQNGR 436
           GY QNGR
Sbjct: 424 GYAQNGR 430

[Close]
BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match: B9GXA8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19010g PE=4 SV=2)

HSP 1 Score: 634.0 bits (1634), Expect = 1.3e-178
Identity = 306/434 (70.51%), Postives = 361/434 (83.18%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSS LLP ++ P              P  I   +SPL  HTLS+RTHIPSH+Y+HPAA+L
Sbjct: 1   MSSHLLPFTATP--------------PPQIPSKASPLAQHTLSQRTHIPSHIYKHPAAIL 60

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LELCTS KE+HQILP +IKNGLYNE LFQTKL+SLF KYG++ EA+RVFEPIE+K D LY
Sbjct: 61  LELCTSSKEVHQILPQIIKNGLYNETLFQTKLISLFCKYGNLTEASRVFEPIEDKFDALY 120

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKGYAK+SSL++AL+F  RM++D V+PVVYNFTYLLK+CGDN+DLKRG+EIHG++I 
Sbjct: 121 HTMLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVIT 180

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           + F  N+FAMTGVVNMYAKCRQI+DAY MFDRMP RDLV WNT+I+G++QNGFA  AL L
Sbjct: 181 SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 240

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           VL M +EG RPDSIT+V++LPA AD   L +G ++HGY +RAGF  LVN+STALVDMYSK
Sbjct: 241 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 300

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           CGSV  AR+IFDGM+ +TVVSWNSM+ GYVQSG+ E A+ IF+KMLDEG++PTNVT+M A
Sbjct: 301 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 360

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E GKFVHK VD+L L SDVS+MNSLISMYSKC RVDIA+DIFKNL  KTL
Sbjct: 361 LHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 420

Query: 421 VSWNAMILGYTQNG 435
           VSWNAMILGY QNG
Sbjct: 421 VSWNAMILGYAQNG 420

[Close]
BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match: F6I6N4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02100 PE=4 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 5.0e-178
Identity = 304/415 (73.25%), Postives = 358/415 (86.27%), Query Frame = 1 

Query: 21  NRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMKELHQILPLVIKN 80
           N  PL P      +S L   T S RT+IPSHVY+HP+A+LLELCTSMKELHQ +PL+IKN
Sbjct: 51  NTLPLPPPPPPSPTSNL-HRTPSSRTYIPSHVYKHPSAILLELCTSMKELHQFIPLIIKN 110

Query: 81  GLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYAKNSSLETALAFL 140
           GLY+EHLFQTKLVSLF K+GS++EAARVF+PIE+KID LYHTMLKGYA+NSSL+ A++F 
Sbjct: 111 GLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFF 170

Query: 141 CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVFAMTGVVNMYAKC 200
           CRMRYD V+PVVYNFTYLLKVCGDNADL++G+EIH  LI N F +NVFAMTGVVNMYAKC
Sbjct: 171 CRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKC 230

Query: 201 RQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEGQRPDSITLVTVL 260
           R +++AYKMFDRMP RDLV WNTII+G++QNGF   ALELVL MQ+EG+RPDSIT+V++L
Sbjct: 231 RLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSIL 290

Query: 261 PAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTARLIFDGMEQKTVV 320
           PA AD+GSL +G+SIHGY++RAGF   VN+STALVDMYSKCGSV TARLIFD M  KTVV
Sbjct: 291 PAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVV 350

Query: 321 SWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFV 380
           SWNSM+ GYVQ+G+P  A+ IF+KM+DE +E TNVT+M ALHACADLGD E G+FVHK +
Sbjct: 351 SWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLL 410

Query: 381 DKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMILGYTQNGR 436
           D+L LGSDVS+MNSLISMYSKC RVDIA++IF+NL  KTLVSWNAMILGY QNGR
Sbjct: 411 DQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGR 464

[Close]
BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match: M5X677_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001444mg PE=4 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 7.3e-177
Identity = 315/438 (71.92%), Postives = 366/438 (83.56%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSIS--ISSSPLPS-HTLSERTHIPSHVYRHPA 60
           MSSQLL  ++L  + I  +    PL PS     IS+    + HTLS+RTHIPSHVY HPA
Sbjct: 1   MSSQLLHYTAL--LPITNSITPPPLTPSRARPPISAPQFQAFHTLSQRTHIPSHVYTHPA 60

Query: 61  AVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKID 120
           A+LLELCTS+KEL+QI+PL+IKNGLYNEHLFQTKLVSLF  YGS +EA RVFE +E+K++
Sbjct: 61  AILLELCTSIKELNQIIPLIIKNGLYNEHLFQTKLVSLFCNYGSPSEAFRVFETVEDKLE 120

Query: 121 VLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGN 180
           V YHT+LKGYAKNSSL  A++F CRM+ D V+PVVYNFTYLLKVCGDNADL+RG+EIH +
Sbjct: 121 VFYHTLLKGYAKNSSLGDAMSFFCRMKSDGVRPVVYNFTYLLKVCGDNADLRRGKEIHAH 180

Query: 181 LIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKA 240
           LI + F  N+FAMT VVNMYAKCRQI++AYKMFDRMP RDLVSWNTII G++QNG A  A
Sbjct: 181 LISSGFATNLFAMTAVVNMYAKCRQINEAYKMFDRMPERDLVSWNTIIAGYAQNGLAKIA 240

Query: 241 LELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDM 300
           LELV+ MQ+EGQ+PDSITLVT+LPA AD GSL++GKSIH Y +RA F  LVNISTAL+DM
Sbjct: 241 LELVIRMQEEGQKPDSITLVTLLPAVADYGSLIIGKSIHAYVLRASFESLVNISTALLDM 300

Query: 301 YSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTI 360
           YSKCGSV TARLIF+ M+QKT VSWNSM+ GYVQ+ + E A+ IF+KMLDEG +PTNVTI
Sbjct: 301 YSKCGSVGTARLIFNRMKQKTAVSWNSMIDGYVQNEDAEEAMEIFQKMLDEGFQPTNVTI 360

Query: 361 MEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHR 420
           MEALHACADLGD E GKFVHK VD+L LGSDVS+MNSL+SMYSKC RVDIA+ IFKNL  
Sbjct: 361 MEALHACADLGDLERGKFVHKLVDQLKLGSDVSVMNSLMSMYSKCKRVDIAAKIFKNLLG 420

Query: 421 KTLVSWNAMILGYTQNGR 436
           KTLVSWN MILGY QNGR
Sbjct: 421 KTLVSWNTMILGYAQNGR 436

[Close]
BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match: A0A067L904_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1)

HSP 1 Score: 604.4 bits (1557), Expect = 1.1e-169
Identity = 295/434 (67.97%), Postives = 361/434 (83.18%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSSQLLP +S P+   +  +++T         S+SP    TLS+R HIP+++Y+HPAA+L
Sbjct: 1   MSSQLLPFASTPTPPSSPLYSKT-------RSSASP----TLSKRIHIPAYIYKHPAAIL 60

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LELCTS+KELHQILPL+IKNG YNE LFQTKLVSLF KYGS+ EAA VFE +++K++ LY
Sbjct: 61  LELCTSIKELHQILPLIIKNGFYNEELFQTKLVSLFCKYGSLTEAACVFEHVDDKLEALY 120

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKGYAKNSSL+ AL+F CRM++D+V+PVVYNFTYLLK+CGDN+DL+RG+EIHG LI 
Sbjct: 121 HTMLKGYAKNSSLDAALSFFCRMKHDNVEPVVYNFTYLLKLCGDNSDLRRGKEIHGQLIT 180

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           +    N FAMTGVVN+YAKCR+ DDAYKMFDRM  RDLV WNTII+G++QNG    AL+L
Sbjct: 181 SGLSWNQFAMTGVVNLYAKCRKTDDAYKMFDRMSERDLVCWNTIISGYAQNGLPEVALQL 240

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           V  + +EG RPDSIT+V++LPA A+I SL +GK+IHGY IRAGF  LVN STALVDMYSK
Sbjct: 241 VPRIFEEGHRPDSITIVSILPAVANIKSLRIGKAIHGYVIRAGFESLVNTSTALVDMYSK 300

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           C SV TAR+IFDGM ++TVV+WNSM+ G VQSG+P+ A+A+F+KMLDEG +P++VT+ME 
Sbjct: 301 CESVGTARVIFDGMNRRTVVTWNSMIDGCVQSGDPQEAMALFQKMLDEGFQPSDVTLMEV 360

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E GKFVHK VD+L L S+VS+MNSLISMYS+C RVDIA++IFKNL  KTL
Sbjct: 361 LHACADLGDLEQGKFVHKLVDELKLDSNVSVMNSLISMYSRCKRVDIAANIFKNLQNKTL 420

Query: 421 VSWNAMILGYTQNG 435
           VSWNAMILGY QNG
Sbjct: 421 VSWNAMILGYAQNG 423

[Close]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 550.1 bits (1416), Expect = 1.3e-156
Identity = 269/435 (61.84%), Postives = 339/435 (77.93%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSSQL+  S++P I    + +R                 H LSER +IP++VY HPAA+L
Sbjct: 1   MSSQLVQFSTVPQIPNPPSRHR-----------------HFLSERNYIPANVYEHPAALL 60

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LE C+S+KEL QILPLV KNGLY EH FQTKLVSLF +YGS++EAARVFEPI+ K++VLY
Sbjct: 61  LERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLY 120

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKG+AK S L+ AL F  RMRYDDV+PVVYNFTYLLKVCGD A+L+ G+EIHG L+K
Sbjct: 121 HTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 180

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           + F  ++FAMTG+ NMYAKCRQ+++A K+FDRMP RDLVSWNTI+ G+SQNG A  ALE+
Sbjct: 181 SGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 240

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           V SM +E  +P  IT+V+VLPA + +  + VGK IHGYA+R+GF  LVNISTALVDMY+K
Sbjct: 241 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 300

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           CGS++TAR +FDGM ++ VVSWNSM+  YVQ+  P+ A+ IF+KMLDEG++PT+V++M A
Sbjct: 301 CGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGA 360

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E G+F+HK   +L L  +VS++NSLISMY KC  VD A+ +F  L  +TL
Sbjct: 361 LHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTL 418

Query: 421 VSWNAMILGYTQNGR 436
           VSWNAMILG+ QNGR
Sbjct: 421 VSWNAMILGFAQNGR 418

[Close]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match: AT1G15510.1 (AT1G15510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 254.2 bits (648), Expect = 1.4e-67
Identity = 123/344 (35.76%), Postives = 202/344 (58.72%), Query Frame = 1 

Query: 93  VSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYAKNSSLETALAFLCRMRY-DDVKPV 152
           +++F ++G++ +A  VF  + E+    ++ ++ GYAK    + A+    RM +   VKP 
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 153 VYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFD 212
           VY F  +L+ CG   DL RG+E+H ++++  +  ++  +  ++ MY KC  +  A  +FD
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFD 255

Query: 213 RMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMV 272
           RMP RD++SWN +I+G+ +NG  ++ LEL  +M+     PD +TL +V+ A   +G   +
Sbjct: 256 RMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRL 315

Query: 273 GKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQ 332
           G+ IH Y I  GF+  +++  +L  MY   GS   A  +F  ME+K +VSW +M++GY  
Sbjct: 316 GRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEY 375

Query: 333 SGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSI 392
           +  P+ AI  +  M  + ++P  +T+   L ACA LGD + G  +HK   K  L S V +
Sbjct: 376 NFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIV 435

Query: 393 MNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMILGYTQNGR 436
            N+LI+MYSKC  +D A DIF N+ RK ++SW ++I G   N R
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNR 479

[Close]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-64
Identity = 123/380 (32.37%), Postives = 218/380 (57.37%), Query Frame = 1 

Query: 58  AVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKID 117
           A L++  T   +L QI   ++  GL       TKL+   S +G I  A +VF+ +     
Sbjct: 25  ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQI 84

Query: 118 VLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGN 177
             ++ +++GY++N+  + AL     M+   V P  + F +LLK C   + L+ GR +H  
Sbjct: 85  FPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQ 144

Query: 178 LIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPV--RDLVSWNTIITGFSQNGFAN 237
           + +  F A+VF   G++ +YAKCR++  A  +F+ +P+  R +VSW  I++ ++QNG   
Sbjct: 145 VFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPM 204

Query: 238 KALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALV 297
           +ALE+   M+    +PD + LV+VL A   +  L  G+SIH   ++ G     ++  +L 
Sbjct: 205 EALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLN 264

Query: 298 DMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNV 357
            MY+KCG V TA+++FD M+   ++ WN+M++GY ++G    AI +F +M+++ + P  +
Sbjct: 265 TMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTI 324

Query: 358 TIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNL 417
           +I  A+ ACA +G  E  + ++++V + +   DV I ++LI M++KC  V+ A  +F   
Sbjct: 325 SITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRT 384

Query: 418 HRKTLVSWNAMILGYTQNGR 436
             + +V W+AMI+GY  +GR
Sbjct: 385 LDRDVVVWSAMIVGYGLHGR 404

[Close]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match: AT4G18750.1 (AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 235.7 bits (600), Expect = 5.3e-62
Identity = 119/377 (31.56%), Postives = 211/377 (55.97%), Query Frame = 1 

Query: 60  LLELCT---SMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKI 119
           +L+LC    S+K+  ++   +  NG   +    +KL  +++  G + EA+RVF+ ++ + 
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159

Query: 120 DVLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHG 179
            + ++ ++   AK+     ++    +M    V+   Y F+ + K       +  G ++HG
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219

Query: 180 NLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANK 239
            ++K+ FG        +V  Y K +++D A K+FD M  RD++SWN+II G+  NG A K
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 240 ALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVD 299
            L + + M   G   D  T+V+V    AD   + +G+++H   ++A FS+       L+D
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339

Query: 300 MYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVT 359
           MYSKCG +D+A+ +F  M  ++VVS+ SM+AGY + G    A+ +FE+M +EGI P   T
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399

Query: 360 IMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLH 419
           +   L+ CA     + GK VH+++ + +LG D+ + N+L+ MY+KC  +  A  +F  + 
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459

Query: 420 RKTLVSWNAMILGYTQN 434
            K ++SWN +I GY++N
Sbjct: 460 VKDIISWNTIIGGYSKN 476

[Close]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match: AT3G05240.1 (AT3G05240.1 mitochondrial editing factor 19)

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-61
Identity = 122/390 (31.28%), Postives = 221/390 (56.67%), Query Frame = 1 

Query: 56  PAAVLLELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFS---KYGSINEAARVFEPI 115
           P    LE C S+ EL+Q+  L+IK+ +    +  ++L+   +   +  +++ A  VFE I
Sbjct: 8   PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67

Query: 116 EEKIDVLYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGR 175
           +     ++++M++GY+ + + + AL F   M      P  + F Y+LK C    D++ G 
Sbjct: 68  DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127

Query: 176 EIHGNLIKNSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNG 235
            +HG ++K  F  N++  T +++MY  C +++   ++F+ +P  ++V+W ++I+GF  N 
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 236 FANKALELVLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGF-----SKL 295
             + A+E    MQ  G + +   +V +L A      ++ GK  HG+    GF     SK+
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKV 247

Query: 296 ---VNISTALVDMYSKCGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEK 355
              V ++T+L+DMY+KCG + TAR +FDGM ++T+VSWNS++ GY Q+G+ E A+ +F  
Sbjct: 248 GFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLD 307

Query: 356 MLDEGIEPTNVTIMEALHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNR 415
           MLD GI P  VT +  + A    G  ++G+ +H +V K     D +I+ +L++MY+K   
Sbjct: 308 MLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGD 367

Query: 416 VDIASDIFKNLHRKTLVSWNAMILGYTQNG 435
            + A   F++L +K  ++W  +I+G   +G
Sbjct: 368 AESAKKAFEDLEKKDTIAWTVVIIGLASHG 397

[Close]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match: gi|659090279|ref|XP_008445930.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis melo])

HSP 1 Score: 774.6 bits (1999), Expect = 9.0e-221
Identity = 382/427 (89.46%), Postives = 404/427 (94.61%), Query Frame = 1 

Query: 9   SSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMK 68
           SS+P IAI KAHNRTPLK SSI+I SSPLP HTLSERTHIPSHVY+HPAAVLLELCTSMK
Sbjct: 4   SSVPPIAIVKAHNRTPLKSSSITIPSSPLPFHTLSERTHIPSHVYKHPAAVLLELCTSMK 63

Query: 69  ELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYA 128
           ELHQI+PLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPI++K+D LYHTMLKGYA
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 129 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVF 188
           KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG+EIHG LI NSFGANVF
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFGANVF 183

Query: 189 AMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEG 248
           AMTGVVNMYAKCRQIDDAYKMFDRMP RDLVSWNTII GFSQNGFA KALELVL MQDEG
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 249 QRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTAR 308
           QRPDSITLVTVLPAAAD+GSLMVGKSIHGYAIRAGF+KLVNISTAL DMYSKCGSV+TAR
Sbjct: 244 QRPDSITLVTVLPAAADVGSLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETAR 303

Query: 309 LIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLG 368
           LIFDGM+QKTVVSWNSMM GYVQ+GEPE AIA+FEKML+EGI+PT+VTIMEALHACADLG
Sbjct: 304 LIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTSVTIMEALHACADLG 363

Query: 369 DFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMIL 428
           D E GKFVHKFVD+LNLGSD+S+MNSLISMYSKC R DIASDIF NL+ +T VSWNAMIL
Sbjct: 364 DLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRADIASDIFNNLNGRTHVSWNAMIL 423

Query: 429 GYTQNGR 436
           GY QNGR
Sbjct: 424 GYAQNGR 430

[Close]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match: gi|659090281|ref|XP_008445931.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis melo])

HSP 1 Score: 774.6 bits (1999), Expect = 9.0e-221
Identity = 382/427 (89.46%), Postives = 404/427 (94.61%), Query Frame = 1 

Query: 9   SSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMK 68
           SS+P IAI KAHNRTPLK SSI+I SSPLP HTLSERTHIPSHVY+HPAAVLLELCTSMK
Sbjct: 4   SSVPPIAIVKAHNRTPLKSSSITIPSSPLPFHTLSERTHIPSHVYKHPAAVLLELCTSMK 63

Query: 69  ELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYA 128
           ELHQI+PLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPI++K+D LYHTMLKGYA
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 129 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVF 188
           KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG+EIHG LI NSFGANVF
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFGANVF 183

Query: 189 AMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEG 248
           AMTGVVNMYAKCRQIDDAYKMFDRMP RDLVSWNTII GFSQNGFA KALELVL MQDEG
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 249 QRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTAR 308
           QRPDSITLVTVLPAAAD+GSLMVGKSIHGYAIRAGF+KLVNISTAL DMYSKCGSV+TAR
Sbjct: 244 QRPDSITLVTVLPAAADVGSLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETAR 303

Query: 309 LIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLG 368
           LIFDGM+QKTVVSWNSMM GYVQ+GEPE AIA+FEKML+EGI+PT+VTIMEALHACADLG
Sbjct: 304 LIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTSVTIMEALHACADLG 363

Query: 369 DFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMIL 428
           D E GKFVHKFVD+LNLGSD+S+MNSLISMYSKC R DIASDIF NL+ +T VSWNAMIL
Sbjct: 364 DLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRADIASDIFNNLNGRTHVSWNAMIL 423

Query: 429 GYTQNGR 436
           GY QNGR
Sbjct: 424 GYAQNGR 430

[Close]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match: gi|778704342|ref|XP_004147126.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis sativus])

HSP 1 Score: 767.7 bits (1981), Expect = 1.1e-218
Identity = 379/427 (88.76%), Postives = 401/427 (93.91%), Query Frame = 1 

Query: 9   SSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVLLELCTSMK 68
           SS+P IAI KAHN+TPLK SSI+I SSPLP HTLSER HIPSHVY+HPAAVLLELCTSMK
Sbjct: 4   SSVPPIAIVKAHNQTPLKSSSITIPSSPLPFHTLSERAHIPSHVYKHPAAVLLELCTSMK 63

Query: 69  ELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLYHTMLKGYA 128
           ELHQI+PLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPI++K+D LYHTMLKGYA
Sbjct: 64  ELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYA 123

Query: 129 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIKNSFGANVF 188
           KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRG+EIHG LI NSF ANVF
Sbjct: 124 KNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVF 183

Query: 189 AMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALELVLSMQDEG 248
           AMTGVVNMYAKCRQIDDAYKMFDRMP RDLVSWNTII GFSQNGFA KALELVL MQDEG
Sbjct: 184 AMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG 243

Query: 249 QRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSKCGSVDTAR 308
           QRPDSITLVTVLPAAAD+G LMVGKSIHGYAIRAGF+KLVNISTAL DMYSKCGSV+TAR
Sbjct: 244 QRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETAR 303

Query: 309 LIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEALHACADLG 368
           LIFDGM+QKTVVSWNSMM GYVQ+GEPE AIA+FEKML+EGI+PT VTIMEALHACADLG
Sbjct: 304 LIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLG 363

Query: 369 DFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTLVSWNAMIL 428
           D E GKFVHKFVD+LNLGSD+S+MNSLISMYSKC RVDIASDIF NL+ +T VSWNAMIL
Sbjct: 364 DLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMIL 423

Query: 429 GYTQNGR 436
           GY QNGR
Sbjct: 424 GYAQNGR 430

[Close]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match: gi|566163472|ref|XP_002303960.2| (hypothetical protein POPTR_0003s19010g [Populus trichocarpa])

HSP 1 Score: 634.0 bits (1634), Expect = 1.9e-178
Identity = 306/434 (70.51%), Postives = 361/434 (83.18%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSS LLP ++ P              P  I   +SPL  HTLS+RTHIPSH+Y+HPAA+L
Sbjct: 1   MSSHLLPFTATP--------------PPQIPSKASPLAQHTLSQRTHIPSHIYKHPAAIL 60

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LELCTS KE+HQILP +IKNGLYNE LFQTKL+SLF KYG++ EA+RVFEPIE+K D LY
Sbjct: 61  LELCTSSKEVHQILPQIIKNGLYNETLFQTKLISLFCKYGNLTEASRVFEPIEDKFDALY 120

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKGYAK+SSL++AL+F  RM++D V+PVVYNFTYLLK+CGDN+DLKRG+EIHG++I 
Sbjct: 121 HTMLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVIT 180

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           + F  N+FAMTGVVNMYAKCRQI+DAY MFDRMP RDLV WNT+I+G++QNGFA  AL L
Sbjct: 181 SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 240

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           VL M +EG RPDSIT+V++LPA AD   L +G ++HGY +RAGF  LVN+STALVDMYSK
Sbjct: 241 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 300

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           CGSV  AR+IFDGM+ +TVVSWNSM+ GYVQSG+ E A+ IF+KMLDEG++PTNVT+M A
Sbjct: 301 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 360

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E GKFVHK VD+L L SDVS+MNSLISMYSKC RVDIA+DIFKNL  KTL
Sbjct: 361 LHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 420

Query: 421 VSWNAMILGYTQNG 435
           VSWNAMILGY QNG
Sbjct: 421 VSWNAMILGYAQNG 420

[Close]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match: gi|743817748|ref|XP_011020490.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Populus euphratica])

HSP 1 Score: 634.0 bits (1634), Expect = 1.9e-178
Identity = 306/434 (70.51%), Postives = 360/434 (82.95%), Query Frame = 1 

Query: 1   MSSQLLPVSSLPSIAIAKAHNRTPLKPSSISISSSPLPSHTLSERTHIPSHVYRHPAAVL 60
           MSS LLP ++ P              P  I   +SPL  HTLS+RTHIPSH+Y+HPAA+L
Sbjct: 42  MSSHLLPFTATP--------------PPQIPSKASPLAQHTLSQRTHIPSHIYKHPAAIL 101

Query: 61  LELCTSMKELHQILPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIEEKIDVLY 120
           LELCTS KELHQILP +IKNG+YNE LFQTKL+SLF KYG++ EA+RVFEPIE+K D LY
Sbjct: 102 LELCTSSKELHQILPQIIKNGIYNETLFQTKLISLFCKYGNLTEASRVFEPIEDKFDALY 161

Query: 121 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGREIHGNLIK 180
           HTMLKGYAK+SSL+ AL+F  RM++D V+PVVYNFTYLLK+CGDN+DLKRG+EIHG++I 
Sbjct: 162 HTMLKGYAKSSSLDCALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVIT 221

Query: 181 NSFGANVFAMTGVVNMYAKCRQIDDAYKMFDRMPVRDLVSWNTIITGFSQNGFANKALEL 240
           + F  N+FAMTGVVNMYAKCRQI+DAY MFDRMP RDLV WNTII+G++QNGFA  AL L
Sbjct: 222 SGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTIISGYAQNGFAKAALML 281

Query: 241 VLSMQDEGQRPDSITLVTVLPAAADIGSLMVGKSIHGYAIRAGFSKLVNISTALVDMYSK 300
           VL M +EG RPDSIT+V++LPA AD   L +G ++HGY +RAGF  LVN+STALVDMYSK
Sbjct: 282 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 341

Query: 301 CGSVDTARLIFDGMEQKTVVSWNSMMAGYVQSGEPEMAIAIFEKMLDEGIEPTNVTIMEA 360
           CGSV  AR+IFDGM+ +TVVSWNSM+ GYVQSG+ E A+ IF+KMLDEG++PTNVT+M A
Sbjct: 342 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 401

Query: 361 LHACADLGDFEMGKFVHKFVDKLNLGSDVSIMNSLISMYSKCNRVDIASDIFKNLHRKTL 420
           LHACADLGD E GKFVHK VD+L L SD+S+MNSLISMYSKC RVDIA+DIFKNL  KTL
Sbjct: 402 LHACADLGDLERGKFVHKLVDQLKLDSDLSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 461

Query: 421 VSWNAMILGYTQNG 435
           VSWNAMILGY QNG
Sbjct: 462 VSWNAMILGYAQNG 461

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g04680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR32_ARATH2.3e-15561.84Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop... [more]
PPR45_ARATH2.6e-6635.76Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidop... [more]
PP224_ARATH2.7e-6332.37Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN... [more]
PP320_ARATH9.4e-6131.56Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t... [more]
PP214_ARATH3.6e-6031.28Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis th... [more]
BLAST of Cp4.1LG09g04680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPP6_CUCSA7.7e-21988.76Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1[more]
B9GXA8_POPTR1.3e-17870.51Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19010g PE=4 SV=2[more]
F6I6N4_VITVI5.0e-17873.25Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g02100 PE=4 SV=... [more]
M5X677_PRUPE7.3e-17771.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001444mg PE=4 SV=1[more]
A0A067L904_JATCU1.1e-16967.97Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1[more]
BLAST of Cp4.1LG09g04680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11290.11.3e-15661.84 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G15510.11.4e-6735.76 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G12770.11.5e-6432.37 mitochondrial editing factor 22[more]
AT4G18750.15.3e-6231.56 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G05240.12.0e-6131.28 mitochondrial editing factor 19[more]
BLAST of Cp4.1LG09g04680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090279|ref|XP_008445930.1|9.0e-22189.46PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc... [more]
gi|659090281|ref|XP_008445931.1|9.0e-22189.46PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc... [more]
gi|778704342|ref|XP_004147126.2|1.1e-21888.76PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc... [more]
gi|566163472|ref|XP_002303960.2|1.9e-17870.51hypothetical protein POPTR_0003s19010g [Populus trichocarpa][more]
gi|743817748|ref|XP_011020490.1|1.9e-17870.51PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Populus euphra... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006464 cellular protein modification process
biological_process GO:0015031 protein transport
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g04680.1Cp4.1LG09g04680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 292..317
score: 0.054coord: 191..216
score: 0.0051coord: 421..436
score: 0.061coord: 392..418
score: 0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 318..357
score: 2.4E-10coord: 217..261
score: 2.
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 119..165
score: 4.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 320..353
score: 1.5E-9coord: 219..252
score: 5.1E-6coord: 118..147
score: 2.6E-4coord: 191..218
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 217..251
score: 11.257coord: 388..422
score: 8.89coord: 116..150
score: 9.01coord: 85..115
score: 5.24coord: 318..352
score: 13.197coord: 287..317
score: 6.511coord: 186..216
score: 8.254coord: 151..185
score: 5
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 316..436
score: 2.4E-4coord: 196..217
score: 2.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 389..435
score: 1.5E-195coord: 22..353
score: 1.5E
NoneNo IPR availablePANTHERPTHR24015:SF605SUBFAMILY NOT NAMEDcoord: 22..353
score: 1.5E-195coord: 389..435
score: 1.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g04680Cucsa.076500Cucumber (Gy14) v1cgycpeB0121
Cp4.1LG09g04680CmoCh18G008390Cucurbita moschata (Rifu)cmocpeB376
Cp4.1LG09g04680CmoCh04G013590Cucurbita moschata (Rifu)cmocpeB648
Cp4.1LG09g04680Cla022899Watermelon (97103) v1cpewmB055
Cp4.1LG09g04680Cla022893Watermelon (97103) v1cpewmB057
Cp4.1LG09g04680Csa5G583260Cucumber (Chinese Long) v2cpecuB042
Cp4.1LG09g04680MELO3C011786Melon (DHL92) v3.5.1cpemeB025
Cp4.1LG09g04680ClCG11G012940Watermelon (Charleston Gray)cpewcgB018
Cp4.1LG09g04680ClCG11G012880Watermelon (Charleston Gray)cpewcgB020
Cp4.1LG09g04680CSPI05G20650Wild cucumber (PI 183967)cpecpiB037
Cp4.1LG09g04680Lsi04G007550Bottle gourd (USVL1VR-Ls)cpelsiB033
Cp4.1LG09g04680MELO3C011786.2Melon (DHL92) v3.6.1cpemedB029
Cp4.1LG09g04680CsaV3_5G029410Cucumber (Chinese Long) v3cpecucB0044
Cp4.1LG09g04680Bhi07G000956Wax gourdcpewgoB0056
Cp4.1LG09g04680CsGy5G020140Cucumber (Gy14) v2cgybcpeB582
Cp4.1LG09g04680Carg14431Silver-seed gourdcarcpeB1017
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g04680Cucumber (Chinese Long) v3cpecucB0052
Cp4.1LG09g04680Cucurbita pepo (Zucchini)cpecpeB036
Cp4.1LG09g04680Cucumber (Gy14) v1cgycpeB0733
Cp4.1LG09g04680Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g04680Cucurbita maxima (Rimu)cmacpeB697
Cp4.1LG09g04680Cucurbita maxima (Rimu)cmacpeB700
Cp4.1LG09g04680Cucurbita moschata (Rifu)cmocpeB651
Cp4.1LG09g04680Wild cucumber (PI 183967)cpecpiB043
Cp4.1LG09g04680Cucumber (Chinese Long) v2cpecuB048
Cp4.1LG09g04680Bottle gourd (USVL1VR-Ls)cpelsiB031
Cp4.1LG09g04680Melon (DHL92) v3.5.1cpemeB022
Cp4.1LG09g04680Cucumber (Gy14) v2cgybcpeB589
Cp4.1LG09g04680Silver-seed gourdcarcpeB1169
Cp4.1LG09g04680Silver-seed gourdcarcpeB1172