CmoCh04G013590 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G013590
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Pentatricopeptide repeat-containing protein) (3.4.24.-) (3.6.4.3)
Location	Cmo_Chr04 : 6928043 .. 6929529 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGCGTTGTGAATTTGTGCGCTAAATGCAGGCAGATTGATGATGCGTACAAGGTGTTCGACAGAATGCCTCAGAGAGATTTGGTGTTTTGGGGTGCAATTATGGCTGGGTTTTCTCAAAATGGCTCTGCAAGGAAGGCACTGGAGTTGGCTTTGAGGATGCAAGATGAAGGCCAAGGCCTGATTTGATTACATTTGTTACTGTTTTGCCTGCTGTTGCTGATGTTCGGTCATTCGTTCGTCACGGGTATGCCATTAGAGCTGGGTTTGCAAAGCTTGTTAATATTTCAACTGCTCTGGTTGATGTGTACTCAAAATGTGGGTGAGTGGAGAGAGCTAGATTGATTTTTGATGGAATGGATCAGAGGACTGTTGTGTCATGGAACTCCATGATTGTTGGATATGTGCAAAGTGGTGAACCAGAGATGGCTATTGCAGGAGGAAGGGATAGAGATAAGCTAAGCAATGTAATACTTGTGGAAGCTTTGAATGCCTATGCCGATTTGGGCGATCGCAAGAGGTAGAAATTTGTCGATAAGTTAAATCTTGGTTGTGATGCCGCAGTCACTCGGTATGGTGTGAGGGGCTCTACTATTTCAAGAAAATGGATTAAAGCCTTTGATGGATCACTACAGTGCCATGGTCGACCTTCTCGATCGAGTTGATAAGATCAAGGAAGCCTGAGATTTTATTAAAAACATGCACATTCGTTTAGGAGCACAACTCATTTACAATCTAAGAGCATATATGCCTTTTTTGAAGAACTTAGAGATGAAATCAAGGTAGCTGATTATGTGCCAGATACTAACTCGATTCAAGATGTAGAAGACGATGTGCAGGAGCAGCTCCTCAATAGCCATAGCGAGAAGCTCGCCATTACTTTTGGTCTTTTAAATACCAGTCCTGATACTACGATACACGTTCGAAAGAACCTACGAGTGTGTGGAGATATGCATAGATTTCATCATTTCAAAAATGAAACTTGACTGTAACTCCTGCAATTGATAATGTATAGCAAAAGACATCATGAACACTAATGTTTGTGATTGTTCCAAAAGAAATGAACAAAAGACACAATAGAACGGAGAGAGTAATTGTCTAAGGTCTACCCAATATTAGATGTAAAAGAAGCATAAGAAATTGATTCATAATAAATTGATATGAACATTATGAGCTGTCCCTATTGTTGCTATACTTTCTGCTCGGTTCGATAAAGCTCGGTTCCACCATTCTAACTACAAATGAAAGTGAATCCATTCTTTTTCATTCTAAAACGAAACAACTTAAAAAAGCTCAAGAAGTTGTAAGAGAATGAGCCAGCAGCCTCAATAGGAAGGGAAAAAGGCCTCCCATTTCAATATATCATTGGATTCAGAATTAGGCTACATACTTAACAATGGCATGAGACAAATAGTAAGAGATTTAGCTAACAGCCTCAAATTGTAAAGGGAGAGCGGTATACCTCTGTGAGAGAGAGATCTTGA

mRNA sequence

ATGACTGGCGTTGTGAATTTGTGCGCTAAATGCAGGCAGATTGATGATGCGTACAAGGTGTTCGACAGAATGCCTCAGAGAGATTTGGTGTTTTGGGGTGCAATTATGGCTGGGCCAAGGCCTGATTTGATTACATTTGTTACTGTTTTGCCTGCTGTTGCTGATGTTCGGTCATTCGTTCGTCACGGGTATGCCATTAGAGCTGGGTTTGCAAAGCTTGTTAATATTTCAACTGCTCTGAGGACTGTTGTGTCATGGAACTCCATGATTGTTGGATATGTGCAAAGTGGTGAACCAGAGATGGCTATTGCAGGAGGAAGGGATAGAGATAAGCTAAGCAATGTAATACTTGTGGAAGCTTTGAATGCCTATGCCGATTTGGGCGATCGCAAGAGGAGCACAACTCATTTACAATCTAAGAGCATATATGCCTTTTTTGAAGAACTTAGAGATGAAATCAAGGTAGCTGATTATGTGCCAGATACTAACTCGATTCAAGATGTAGAAGACGATGTGCAGGAGCAGCTCCTCAATAGCCATAGCGAGAAGCTCGCCATTACTTTTGGTCTTTTAAATACCAGTCCTGATACTACGATACACGTTCGAAAGAACCTACGAGGAGAGCGGTATACCTCTGTGAGAGAGAGATCTTGA

Coding sequence (CDS)

ATGACTGGCGTTGTGAATTTGTGCGCTAAATGCAGGCAGATTGATGATGCGTACAAGGTGTTCGACAGAATGCCTCAGAGAGATTTGGTGTTTTGGGGTGCAATTATGGCTGGGCCAAGGCCTGATTTGATTACATTTGTTACTGTTTTGCCTGCTGTTGCTGATGTTCGGTCATTCGTTCGTCACGGGTATGCCATTAGAGCTGGGTTTGCAAAGCTTGTTAATATTTCAACTGCTCTGAGGACTGTTGTGTCATGGAACTCCATGATTGTTGGATATGTGCAAAGTGGTGAACCAGAGATGGCTATTGCAGGAGGAAGGGATAGAGATAAGCTAAGCAATGTAATACTTGTGGAAGCTTTGAATGCCTATGCCGATTTGGGCGATCGCAAGAGGAGCACAACTCATTTACAATCTAAGAGCATATATGCCTTTTTTGAAGAACTTAGAGATGAAATCAAGGTAGCTGATTATGTGCCAGATACTAACTCGATTCAAGATGTAGAAGACGATGTGCAGGAGCAGCTCCTCAATAGCCATAGCGAGAAGCTCGCCATTACTTTTGGTCTTTTAAATACCAGTCCTGATACTACGATACACGTTCGAAAGAACCTACGAGGAGAGCGGTATACCTCTGTGAGAGAGAGATCTTGA

Homology

[Close]

BLAST of CmoCh04G013590 vs. Swiss-Prot
Match: PPR32_ARATH (Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-23
Identity = 75/183 (40.98%), Postives = 99/183 (54.10%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTG+ N+ AKCRQ+++A KVFDRMP+RDLV W  I+AG                      
Sbjct: 173 MTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENL 232

Query: 61  RPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVNISTAL--------------- 120
           +P  IT V+VLPAV+ +R        HGYA+R+GF  LVNISTAL               
Sbjct: 233 KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQ 292

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD 133
                  R VVSWNSMI  YVQ+  P+ A+   +    +  K ++V ++ AL+A ADLGD
Sbjct: 293 LFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD 352

[Close]

BLAST of CmoCh04G013590 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-12
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 135 THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNT 194
           TH +   IY   +++ DEIK   YVPDT S+  D+E++V+EQ+L  HSEKLAI FGL++T
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 195 SPDTTIHVRKNLR 207
              TT+ + KNLR
Sbjct: 732 PDKTTLRIMKNLR 744

[Close]

BLAST of CmoCh04G013590 vs. Swiss-Prot
Match: PP285_ARATH (Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 134 TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLN 193
           ++H QS+ +  + E L + ++   YVPDT+ +  +VE+D +E LL  HSEKLAI FG+LN
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 834

Query: 194 TSPDTTIHVRKNLR 207
           TSP T I V KNLR
Sbjct: 835 TSPGTIIRVAKNLR 848

[Close]

BLAST of CmoCh04G013590 vs. Swiss-Prot
Match: PP219_ARATH (Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 59/207 (28.50%), Postives = 95/207 (45.89%), Query Frame = 1


Query: 4   VVNLCAKCRQIDDAYKVFDRMPQR-DLVFWGAIMAGPR--PDLITFVTVLPAVADVRSFV 63
           +V+L  +   +DDAY++   MP R + + WGA+++G R   D     TVL  +  +  + 
Sbjct: 456 MVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWN 515

Query: 64  RHGYAIRAGFAKLVNISTALRTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKLSNVILVEA 123
              Y         V +S        W+          +  M    G    +L   +    
Sbjct: 516 AGNY---------VQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV---- 575

Query: 124 LNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQ-DVEDDVQEQLLNS 183
              +  L D K   +H  S  IYA  E+L +E+++  +VP T  +  DVE++ +E++L  
Sbjct: 576 ---HEFLADDK---SHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGY 635

Query: 184 HSEKLAITFGLLNTSPDTTIHVRKNLR 207
           HSEKLA+  GL++T     I V KNLR
Sbjct: 636 HSEKLAVALGLISTDHGQVIRVVKNLR 643

[Close]

BLAST of CmoCh04G013590 vs. Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-10
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1


Query: 4   VVNLCAKCRQIDDAYKVFDRMP-QRDLVFWGAIMAG--PRPDLITFVTVLPAVADVRSFV 63
           +V+L  +   +++AY+   +MP + D   WGA++       D+I    +   VADV   V
Sbjct: 355 MVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI----LGQKVADV--LV 414

Query: 64  RHGYAIRAGFAKLVNISTALRTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKLSNVILVEA 123
                I +    L NI  A      W+      V     +M   G +     S+V     
Sbjct: 415 ETAPDIGSYHVLLSNIYAAAG---KWDC-----VDKVRSKMRKLGTKKVAAYSSVEFEGK 474

Query: 124 LNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNS 183
           ++ + + GD+    +H QSK+IY   +E+  +I+   YVPDT S+  DVE + +E  L+ 
Sbjct: 475 IHFF-NRGDK----SHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSH 534

Query: 184 HSEKLAITFGLLNTSPDTTIHVRKNLR 207
           HSEKLAI FGL+   P   I V KNLR
Sbjct: 535 HSEKLAIAFGLIKGRPGHPIRVMKNLR 542

[Close]

BLAST of CmoCh04G013590 vs. TrEMBL
Match: A0A0A0KPP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.9e-33
Identity = 98/203 (48.28%), Postives = 115/203 (56.65%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+AG                      
Sbjct: 185 MTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ 244

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VTVLPA ADV   +     HGYAIRAGFAKLVNISTAL               
Sbjct: 245 RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYAD 150
                  +TVVSWNSM+ GYVQ+GEPE AIA        G D    + V ++EAL+A AD
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP---TGVTIMEALHACAD 364

[Close]

BLAST of CmoCh04G013590 vs. TrEMBL
Match: B9GXA8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19010g PE=4 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 89/216 (41.20%), Postives = 115/216 (53.24%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GP 60
           MTGVVN+ AKCRQI+DAY +FDRMP+RDLV W  +++                     G 
Sbjct: 176 MTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGH 235

Query: 61  RPDLITFVTVLPAVADVR----SFVRHGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT V++LPAVAD R        HGY +RAGF  LVN+STAL               
Sbjct: 236 RPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARV 295

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD 166
                  RTVVSWNSMI GYVQSG+ E A+   +    +  + +NV ++ AL+A ADLGD
Sbjct: 296 IFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGD 355

[Close]

BLAST of CmoCh04G013590 vs. TrEMBL
Match: A0A067DM20_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003531mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 90/219 (41.10%), Postives = 115/219 (52.51%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GP 60
           MTGVVN+ AKC QI++AYK+FDRMP+RDLV W  I+A                     G 
Sbjct: 176 MTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR 235

Query: 61  RPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVNISTAL--------------- 120
           R D IT V++LPAVA+V S       HGYA+RAGF  +VN+STAL               
Sbjct: 236 RGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETARL 295

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKL-------SNVILVEALNAYAD 166
                  R VVSWNSMI  YV+ G PE A+   R   K+       +NV ++EAL+A AD
Sbjct: 296 VFDGMKSRNVVSWNSMIAAYVEGGNPEEAM---RIFQKMLDQGVEPTNVTIMEALHACAD 355

[Close]

BLAST of CmoCh04G013590 vs. TrEMBL
Match: V4T7P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000307mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 90/219 (41.10%), Postives = 115/219 (52.51%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GP 60
           MTGVVN+ AKC QI++AYK+FDRMP+RDLV W  I+A                     G 
Sbjct: 176 MTGVVNMYAKCGQIEEAYKMFDRMPERDLVSWNTIVAGFAQNGFAELALDLVTRMHEEGR 235

Query: 61  RPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVNISTAL--------------- 120
           R D IT V++LPAVA+V S       HGYA+RAGF  +VN+STAL               
Sbjct: 236 RGDFITIVSILPAVANVGSLRIGKAVHGYAMRAGFDSIVNVSTALVDMYAKCGRVETSRL 295

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKL-------SNVILVEALNAYAD 166
                  R VVSWNSMI  YV+ G PE A+   R   K+       +NV ++EAL+A AD
Sbjct: 296 VFDGMKSRNVVSWNSMIAAYVEGGNPEEAM---RIFQKMLDQGVEPTNVTIMEALHACAD 355

[Close]

BLAST of CmoCh04G013590 vs. TrEMBL
Match: A0A067L904_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.2e-28
Identity = 90/216 (41.67%), Postives = 116/216 (53.70%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GP 60
           MTGVVNL AKCR+ DDAYK+FDRM +RDLV W  I++                     G 
Sbjct: 179 MTGVVNLYAKCRKTDDAYKMFDRMSERDLVCWNTIISGYAQNGLPEVALQLVPRIFEEGH 238

Query: 61  RPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT V++LPAVA+++S       HGY IRAGF  LVN STAL               
Sbjct: 239 RPDSITIVSILPAVANIKSLRIGKAIHGYVIRAGFESLVNTSTALVDMYSKCESVGTARV 298

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD 166
                  RTVV+WNSMI G VQSG+P+ A+A  +    +  + S+V L+E L+A ADLGD
Sbjct: 299 IFDGMNRRTVVTWNSMIDGCVQSGDPQEAMALFQKMLDEGFQPSDVTLMEVLHACADLGD 358

[Close]

BLAST of CmoCh04G013590 vs. TAIR10
Match: AT1G11290.1 (AT1G11290.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-25
Identity = 75/183 (40.98%), Postives = 99/183 (54.10%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTG+ N+ AKCRQ+++A KVFDRMP+RDLV W  I+AG                      
Sbjct: 173 MTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENL 232

Query: 61  RPDLITFVTVLPAVADVRSF----VRHGYAIRAGFAKLVNISTAL--------------- 120
           +P  IT V+VLPAV+ +R        HGYA+R+GF  LVNISTAL               
Sbjct: 233 KPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQ 292

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD 133
                  R VVSWNSMI  YVQ+  P+ A+   +    +  K ++V ++ AL+A ADLGD
Sbjct: 293 LFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD 352

[Close]

BLAST of CmoCh04G013590 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-13
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 135 THLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLNT 194
           TH +   IY   +++ DEIK   YVPDT S+  D+E++V+EQ+L  HSEKLAI FGL++T
Sbjct: 672 THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLIST 731

Query: 195 SPDTTIHVRKNLR 207
              TT+ + KNLR
Sbjct: 732 PDKTTLRIMKNLR 744

[Close]

BLAST of CmoCh04G013590 vs. TAIR10
Match: AT3G57430.1 (AT3G57430.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 134 TTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNSHSEKLAITFGLLN 193
           ++H QS+ +  + E L + ++   YVPDT+ +  +VE+D +E LL  HSEKLAI FG+LN
Sbjct: 775 SSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILN 834

Query: 194 TSPDTTIHVRKNLR 207
           TSP T I V KNLR
Sbjct: 835 TSPGTIIRVAKNLR 848

[Close]

BLAST of CmoCh04G013590 vs. TAIR10
Match: AT3G08820.1 (AT3G08820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 7.3e-12
Identity = 59/207 (28.50%), Postives = 95/207 (45.89%), Query Frame = 1


Query: 4   VVNLCAKCRQIDDAYKVFDRMPQR-DLVFWGAIMAGPR--PDLITFVTVLPAVADVRSFV 63
           +V+L  +   +DDAY++   MP R + + WGA+++G R   D     TVL  +  +  + 
Sbjct: 456 MVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWN 515

Query: 64  RHGYAIRAGFAKLVNISTALRTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKLSNVILVEA 123
              Y         V +S        W+          +  M    G    +L   +    
Sbjct: 516 AGNY---------VQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV---- 575

Query: 124 LNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSIQ-DVEDDVQEQLLNS 183
              +  L D K   +H  S  IYA  E+L +E+++  +VP T  +  DVE++ +E++L  
Sbjct: 576 ---HEFLADDK---SHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGY 635

Query: 184 HSEKLAITFGLLNTSPDTTIHVRKNLR 207
           HSEKLA+  GL++T     I V KNLR
Sbjct: 636 HSEKLAVALGLISTDHGQVIRVVKNLR 643

[Close]

BLAST of CmoCh04G013590 vs. TAIR10
Match: AT2G01510.1 (AT2G01510.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 66/207 (31.88%), Postives = 100/207 (48.31%), Query Frame = 1


Query: 4   VVNLCAKCRQIDDAYKVFDRMP-QRDLVFWGAIMAG--PRPDLITFVTVLPAVADVRSFV 63
           +V+L  +   +++AY+   +MP + D   WGA++       D+I    +   VADV   V
Sbjct: 355 MVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI----LGQKVADV--LV 414

Query: 64  RHGYAIRAGFAKLVNISTALRTVVSWNSMIVGYVQSGEPEMAIAGGRDRDKLSNVILVEA 123
                I +    L NI  A      W+      V     +M   G +     S+V     
Sbjct: 415 ETAPDIGSYHVLLSNIYAAAG---KWDC-----VDKVRSKMRKLGTKKVAAYSSVEFEGK 474

Query: 124 LNAYADLGDRKRSTTHLQSKSIYAFFEELRDEIKVADYVPDTNSI-QDVEDDVQEQLLNS 183
           ++ + + GD+    +H QSK+IY   +E+  +I+   YVPDT S+  DVE + +E  L+ 
Sbjct: 475 IHFF-NRGDK----SHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSH 534

Query: 184 HSEKLAITFGLLNTSPDTTIHVRKNLR 207
           HSEKLAI FGL+   P   I V KNLR
Sbjct: 535 HSEKLAIAFGLIKGRPGHPIRVMKNLR 542

[Close]

BLAST of CmoCh04G013590 vs. NCBI nr
Match: gi|659090281|ref|XP_008445931.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 99/203 (48.77%), Postives = 117/203 (57.64%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+AG                      
Sbjct: 185 MTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ 244

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VTVLPA ADV S +     HGYAIRAGFAKLVNISTAL               
Sbjct: 245 RPDSITLVTVLPAAADVGSLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYAD 150
                  +TVVSWNSM+ GYVQ+GEPE AIA        G D    ++V ++EAL+A AD
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP---TSVTIMEALHACAD 364

[Close]

BLAST of CmoCh04G013590 vs. NCBI nr
Match: gi|659090279|ref|XP_008445930.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 99/203 (48.77%), Postives = 117/203 (57.64%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+AG                      
Sbjct: 185 MTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ 244

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VTVLPA ADV S +     HGYAIRAGFAKLVNISTAL               
Sbjct: 245 RPDSITLVTVLPAAADVGSLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYAD 150
                  +TVVSWNSM+ GYVQ+GEPE AIA        G D    ++V ++EAL+A AD
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP---TSVTIMEALHACAD 364

[Close]

BLAST of CmoCh04G013590 vs. NCBI nr
Match: gi|778704342|ref|XP_004147126.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-33
Identity = 98/203 (48.28%), Postives = 115/203 (56.65%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+AG                      
Sbjct: 185 MTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ 244

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VTVLPA ADV   +     HGYAIRAGFAKLVNISTAL               
Sbjct: 245 RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYAD 150
                  +TVVSWNSM+ GYVQ+GEPE AIA        G D    + V ++EAL+A AD
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP---TGVTIMEALHACAD 364

[Close]

BLAST of CmoCh04G013590 vs. NCBI nr
Match: gi|778704346|ref|XP_011655522.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 7.0e-33
Identity = 98/203 (48.28%), Postives = 115/203 (56.65%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMAG---------------------P 60
           MTGVVN+ AKCRQIDDAYK+FDRMP+RDLV W  I+AG                      
Sbjct: 1   MTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQ 60

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VTVLPA ADV   +     HGYAIRAGFAKLVNISTAL               
Sbjct: 61  RPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 120

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIA-------GGRDRDKLSNVILVEALNAYAD 150
                  +TVVSWNSM+ GYVQ+GEPE AIA        G D    + V ++EAL+A AD
Sbjct: 121 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDP---TGVTIMEALHACAD 180

[Close]

BLAST of CmoCh04G013590 vs. NCBI nr
Match: gi|470145133|ref|XP_004308197.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Fragaria vesca subsp. vesca])

HSP 1 Score: 136.0 bits (341), Expect = 8.1e-29
Identity = 92/216 (42.59%), Postives = 114/216 (52.78%), Query Frame = 1


Query: 1   MTGVVNLCAKCRQIDDAYKVFDRMPQRDLVFWGAIMA---------------------GP 60
           MTGVVNL AKCRQIDDAYK+FDRMP+RDLV W  I+A                     G 
Sbjct: 191 MTGVVNLYAKCRQIDDAYKMFDRMPERDLVSWNTIVAAYAQNGFARRALELVIRMQEEGQ 250

Query: 61  RPDLITFVTVLPAVADVRSFVR----HGYAIRAGFAKLVNISTAL--------------- 120
           RPD IT VT LPAVAD  S +     H Y IRA F  LVN+STAL               
Sbjct: 251 RPDSITLVTALPAVADFGSLLIGKSVHAYVIRASFESLVNVSTALLDMYSKCGSVAIARS 310

Query: 121 -------RTVVSWNSMIVGYVQSGEPEMAIAGGR----DRDKLSNVILVEALNAYADLGD 166
                  +TVVSWNSMI GYVQ+ +PE A+   +    +  + +NV ++EAL+A ADLGD
Sbjct: 311 IFNRMNHKTVVSWNSMIDGYVQNEDPEEAMVIFQKMLDEGFEPTNVTIMEALHACADLGD 370

The following BLAST results are available for this feature:

BLAST of CmoCh04G013590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR32_ARATH	1.0e-23	40.98	Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidop...	[more]
PP168_ARATH	2.4e-12	50.68	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN...	[more]
PP285_ARATH	3.4e-11	50.00	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidop...	[more]
PP219_ARATH	1.3e-10	28.50	Putative pentatricopeptide repeat-containing protein At3g08820 OS=Arabidopsis th...	[more]
PP140_ARATH	2.2e-10	31.88	Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidop...	[more]

BLAST of CmoCh04G013590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP6_CUCSA	4.9e-33	48.28	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G583260 PE=4 SV=1	[more]
B9GXA8_POPTR	3.6e-28	41.20	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s19010g PE=4 SV=2	[more]
A0A067DM20_CITSI	3.6e-28	41.10	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003531mg PE=4 SV=1	[more]
V4T7P0_9ROSI	3.6e-28	41.10	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000307mg PE=4 SV=1	[more]
A0A067L904_JATCU	6.2e-28	41.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24583 PE=4 SV=1	[more]

BLAST of CmoCh04G013590 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G11290.1	5.7e-25	40.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G22070.1	1.3e-13	50.68	pentatricopeptide (PPR) repeat-containing protein	[more]
AT3G57430.1	1.9e-12	50.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G08820.1	7.3e-12	28.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G01510.1	1.2e-11	31.88	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of CmoCh04G013590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090281\|ref\|XP_008445931.1\|	1.1e-33	48.77	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc...	[more]
gi\|659090279\|ref\|XP_008445930.1\|	1.1e-33	48.77	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc...	[more]
gi\|778704342\|ref\|XP_004147126.2\|	7.0e-33	48.28	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X1 [Cuc...	[more]
gi\|778704346\|ref\|XP_011655522.1\|	7.0e-33	48.28	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 isoform X2 [Cuc...	[more]
gi\|470145133\|ref\|XP_004308197.1\|	8.1e-29	42.59	PREDICTED: pentatricopeptide repeat-containing protein At1g11290 [Fragaria vesca...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0015031	protein transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013590.1	CmoCh04G013590.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 84..103 score: 3.3E-4coord: 4..28 score: 0.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 3..30 score: 6.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..104 score: 1.3
None	No IPR available	PANTHER	PTHR24015:SF605	SUBFAMILY NOT NAMED	coord: 1..104 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G013590	Lsi04G007550	Bottle gourd (USVL1VR-Ls)	cmolsiB669
CmoCh04G013590	Cp4.1LG09g04680	Cucurbita pepo (Zucchini)	cmocpeB648
CmoCh04G013590	MELO3C011786.2	Melon (DHL92) v3.6.1	cmomedB734
CmoCh04G013590	CsaV3_5G029410	Cucumber (Chinese Long) v3	cmocucB0849
CmoCh04G013590	Cla97C11G218840	Watermelon (97103) v2	cmowmbB698
CmoCh04G013590	Bhi07G000956	Wax gourd	cmowgoB0891
CmoCh04G013590	CsGy5G020140	Cucumber (Gy14) v2	cgybcmoB628
CmoCh04G013590	Carg02026	Silver-seed gourd	carcmoB1138
CmoCh04G013590	Carg14431	Silver-seed gourd	carcmoB0986

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G013590	CmoCh18G008390	Cucurbita moschata (Rifu)	cmocmoB343

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G013590	Silver-seed gourd	carcmoB0987
CmoCh04G013590	Cucurbita moschata (Rifu)	cmocmoB336
CmoCh04G013590	Cucumber (Gy14) v1	cgycmoB0124
CmoCh04G013590	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G013590	Cucurbita maxima (Rimu)	cmacmoB425
CmoCh04G013590	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G013590	Wild cucumber (PI 183967)	cmocpiB725
CmoCh04G013590	Cucumber (Chinese Long) v2	cmocuB717
CmoCh04G013590	Melon (DHL92) v3.5.1	cmomeB644
CmoCh04G013590	Watermelon (Charleston Gray)	cmowcgB624
CmoCh04G013590	Watermelon (97103) v1	cmowmB724
CmoCh04G013590	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G013590	Cucurbita pepo (Zucchini)	cmocpeB673