Cp4.1LG09g01090 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g01090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Protein of unknown function (DUF2930)
Location	Cp4.1LG09 : 618001 .. 624867 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGATTGAGCAGGGAAGTGTCCGGCCCAATGATCCTCGGTGGAATTTAAGAGAAGTGTTTCTAATGGAATTTGTTTTCTCGATTGCCAAACGGGGAAAGATAATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCGCTAAAAATGGGTCGAAGAGTCCAGTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGTATCTCTTTCTCTTCCTCTATTGTAAATGGGTAATTTCTGAAGGAATTTGATAACATTTCTTTGGAATGGGTTTAGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTTTTGAATCATTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAGTAAGCAATCACAGTTTTCTGGGAACGCCTTTGCTTTTAGGTTCTTGTTGGTGTTTTCGTTATTTCTGCTATTTGATGTGTTTTTTTCTTTTTTTTTTTTTGGTAGAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGTAACATACGAGATATTACATTATTGTCCTGATTATACAGTTATTTTTTAATGTTCTTCTTCTACTTGCTGGGAAACTTCCGTTAATCTCTGTAAGAGTGTGGAAAAAGGAGGATTCGAGGGACTTGAAACTGCTGGCTTGTGTAGTACTTAATGATCAAGTAGGGATTGTGATGGAAAACAAGAGACTGGGACGGGGGGAATATATATTTGATGGATCTTGTTAAAAGAGAATGACCTTAACGAGAGATGAACTTTTATGTGACCGGATTTGTAAAATAAAATTGTATCCCTTAAGAACAGGACGGGCATCTGACTCCTTCATGCAGGCCCCACTTGGCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCACTCTTGCAATTGGGTCGTTGTGATTACGGGTAGGATGTCTAATTGTCCAGGCGATCGATTTCGGTTGGGTGGATGCCTAATGACAATCCTATCTAATAAGTTCAAAGATGCTTCACCTGTTCAATCCAACTCTTCCCAAAGTTGATCCAGCCTGCCTTGAATTTGAATAAGATTGTCATTCTAACCCTGATGGTTTTCTAGACATTCTACGTGTAGTGTTCATCTCGGAATCTTCTTGAAGATTGAAGCCCTCTTATTCGTCCTCTATCTTGCGTAAATTTCTTTTCTAACGTCCTGTTATTGTTAATTCAATTTGGCTCAAATGTCACCTCAGATCTCTTTATCTAGCCTTCCGTCTCCGATAATGACCTATTTGGTAACTGCCCAAGCCCACAGCTAGCAGATATTGTCCTTTTTAGGCTTTTCCTTTCGGGCTTCCTCTTGAGGTTTTTAAAACGGTGTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTATTCTCCAACAATTCTCCTCTCCAACCAACGTGGGATCTCCCATATTTGCTAGGACCATACAAAAAAAGAAGTCTCACCACCTCCTTATATAAGATGTTCTCACATTGTTGACGAAGCCATTATCACTTTTTTGTTATACATTCTAGCATCATACCATTCCATGAGCTGCTGGCTTGCTTATTAGACTAACTTCATCAGGCACCTTGTTGATGTCTAGTTGAAGCATTGGGACTTTTGCTTGCAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAATGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGGTATGGTATCTCACCAATTTTTGTAGTTAGAGAACACGCTGTGTTCAAAAGATTAAATTATTTAGCTTCCCTCGACACTGTCTAAATTTTAATTTTTGCATCAATTATTATCTTTGGAACCAGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAACAGATTTACTTGCTTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTACTTTCCTCAGATTTCAGGTATATGATTGCATTTTTTATGGTATTTTTTGCTCTCTTGCTGCACATGGAATAATGTCTTAGAAACGACCATAATTAGTGGAGAAAACGTTGTTATCTCCTTAAAAATCAACCGCTATCAATATTTGAAGACATTTGCAATGTCATATTGGTTTCTTTTCCTTATGGTGATGAGGTGTTTCTCCTGGTTGTTTTTCTGATGAAACATGCATTGATAGTAATAGTTAAACAAATGCTATGATGTTCTATGAAACCTTTCAAAATCATGGTTTTCATAACTTTTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACATATCGGGGGGAAGTAAGTAATAAATCTCCAATATATTTTTTGGTTATTGACGTGCCTTTCTCAGAAGTCATGAGCATGGTACTGATACTCATTTTTGCCAATAAATTAGAGAATGTTACTATTTTTTTAGTTCAACAATCTTATTGACGCCCATTTCTTAGAGCTCACTAACCTTTGCATTGATTGACGTACAAAAATTACTTTTTGATGCAACTGTTTCGAGCAAGACATGGAAAGAACAGAAACGTGACGTTATGGATTTACTTAGAAACTTAGGAAAGGGATATAATCTGTATTTCAATGCTTTTTCTTATTTTTCACTGTCTTTGGGCCAAAATCTATGAGAGGTGCTTGTAATTTTCCCCTTAATATATTTTCTATCAACCTGCCTGTAACAGTCCAAGCTCACCGCTAGCAAATACGGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCTCTCAAGGCTTTGTAAGACGCATCTACGAGGGAGAGGTGTCCACACCCTTATAAACGGTGTTCCCTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTCGGGGACCCAGCGTCCTTGCTGGCACTCGTTCCCTTTTCCAATTGATGTGGGACCCCCCAATCCACCCCATTCGAGGCCCAGTGTCCTTGTTGGCACACCGTCTCATGTCCACCCCCTTCGAGGCTCAGCCTCCTTGTTGACACATTGCCCAGTGTCTGACTTTGATACCATTTACAACGGCCTAAGCCCGCCGCTAACAGATATTGTACTCTTTAGGTTTTCCCTTTCAGACTTCCTCTCATGGTTTTTTAGAGCGCGTCTACTAAGGAGAGGTTTCCACATCCTTAAAAATGGTGTTTCATTCTCCTCCCCAATCGATGTGGGATCTCACCCTGCCTTTTTGCGAAAATGGTTTTGTTCTAAATTCTCTTTTATTTATACCTAATGAAGTAAATTCTTGGAATAAAATTTGGAGTATCCTGCACCTAGTTGGTACATGTTGCCATTCGCGCTTGGGCAACCAAATGAATGCTTGTTACGAATTTGTATAGAACAGAAGCTTAGCAGATCTTGGCATGATAATTTGGACATGATGCAGCCTCAACATCTATTGAGAGCCTTTGATTTCTTGGGCTGATCTGCTGAACTCAACTCTTTTTCCTCAAATCTAATTTGTTGGGGTGAAAATGTAAGAATCTATTAGAATCTGTATGTTTGCGCGAAGAAAAATGTACATGAAAGAATATATGAAGAACAAATGAGGTCATACAAGTATCACAGTGACCCTTTTTAGAGGTACCCTTCTTTAAGAACTATAATTTAATTTCTCCATGTACACAAGGAAAATGAAAAACAAAAGTTATCTTTCAATTCTCTCTAACTTGAGCTCCTGACTCTTCTTTTTGTTATCAGGTCGAAAGTTCACTCTGTCCAATGAACAACGGAGATGAAGTTTCAGATTGAGCTACAAGGAGAGAGCCTTCGAAGCCTTATAAAAAATTCTCCCAGCCGTATACCAGATTCTGCCAAAGTAGCACAGAAAGGCGATAGTTTGACACAATACAGGATAAAGAAGATCATTCAAGAAAATTCGAGGTGCATATCCTGACGCGTGTTTAGGTACCTTAAGACGCACCACCTTTCTAATTGCCAATAACAAGCCTGGTATTAGACATTGCACGTTTGTAACATCATGTTTGAGAGTGTAAACCTGTGGTGCAAGCCAAAACCTACAACTCTGGTATGATATTGTCCACTTTGAGCACAAGCTTTCATGGCTTTGCTTACCAATAGAGATGTATTCCTTAGTTATAAACTCATGATCATCCTCTTAATTAGTCAATGTGAGACTCCCTCCCAACCACCACTCTGGTTGTAGAATGAGTAGAAAAGATTAAATTTACGAGTCTCTCGCAACTTTCCTAATGTTAGTTAGATAAGAACAGAAACACGATCTATAACTTATCCCTCCAGAAGTAGACATTGGTGCTGGAAGGATGCTCTGGAAGAACTAGGCTGTGCACTCGAACTCGATCTTCTCCAACATCTTGTCCCTTTGCCTGGTAGGAAAAAAGGAGAAATAAGCAAGCGAGTCTTTTTTCTAAATGGGCGTCTGAGTTTGATGTCTTTACGAGGTGAAAGTAAAGAGAATAAAAGCAGGTACATTATGATATATATTTTATTTCACATCATGTCTCAATTCTTAATGACTGATACATCAAATTAAATGAGGCAAGAGACTGCTCATGAATTCAGCTTACCAGTCTCCGGTTGAAATATCTTCTCTGTTGCAGTTCTGGCCCAAGTTTAAGAGGTTGTTAGCTATTTGAGATGCATCTGAAGATGGCACATCCTGTCACCAAAAAAGTCAGTATTTAATGCCCATCTGCTACATTTACTACTCTCTCTTAATGTCCTCTGGTATTTTTCATATTTTTTTAGTACAGCTTCATATGGTATTTTATAATACACTAATGGAGATTTGAAAGACTTGAATCCATGTACTTGATTCAGATGTTAAACTAAGCTAATGTAGGTGAGAGAGGAGTGCATGTTGATTCATCTATAGTTTAATGACAAAGGTCGCAGCGTTGTACGAATGCAATGAAAATGGAAAAGTATTGCCTATTTTTCTTCTTCTTTATGATTTTCTTTTCCTTTGAAACTGAAATAGCAGATTAGTTGATGATATGATTTGATTAACCTGTGCATTCTATCTGGATTCCACAGTCTCAACATTGCAGTAATGGGAGGAAGCTGAAATTGCAACTTGGTGGAGGAGGATAGAACCAATGGACTTAGTTGGGGTGACAAGCCAACCCTGTGACCAAATCCATTAAAGCAGAGAGAGAAAGAGAGGAGAGGGTTATCTTAGGAACCACACTTTCAAAATGGTATGATATTATACACTTTGAGCTCAAATGCTCATGGCTTTGCCTTTCGAGGCCTCGTACCAATGAAAATGTATTCATCATCCCTTTAATTAGCCAATGTGGCTCCCTCTCAACAATTCTCCCTTTGAATAAAGTATACCATAGAGCCTTTCCCGAGACCTATGGAGTCCTCGAACAGCCTCCCATTAATCGAGGATAAACTCTTTCTTTGGAGCCCTCGAACAAAGTACACTATTTGTTCGACACTTGAGAGTCATATTCGACTTTACTTTCGAGACTCACAACTTCTTTATCTGACACTTAAGGATTCTATTGACATGACTTTGATACCAGATAAGGAACCACAACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTTTTCTTAAAATGCGTCGTACCAACGGAGATGTATTTCTTACTTATAAACCCATAATCATCTCCTTAATTAGCCAACGTGGGCTCCCTCCCAACAACCATCCTCAGCAGGTTGAATTAAAATATCTCGCCCTGCACTCACCATGCTTGCTTTCTCACAGAGATAATGCAGTCACTGTGTCAACTTTTATTGCAGGAACATAAACCTCACTTCTCATACCAAATGAAGTTGCCTAAACTGAAAAAAGAAACAAGGCAAAGATGAAGATTTGGGTCTCGAATATTTGCAGAGGAGATAGAAGGGCCCATCAGAGAAAAGAAAAAAAAAAGTTTGATGTTTGCCAAATGGGGAAGAAAGATGAAGATGCTACCTGCTTCACGTTCTCATATACTTTAGAAGGTTGGGTAAAATCAACAACTCCTGTTTCCTTTGACTGCAAATTAGCAATAAAATAGTAAAGTTATAAGACTTAAAGCCAGACAAGGCAATAGATAAAGTTCCAGAGGTTCCTAACCTAATTTCATTTGTACAGATCAGCAAAAACACAGTGAGGAGAGAAATGAAACAGTGGGGTTTCATTAAAAAAGAAAAGAGATCCAGGGCCGCCATTGTTGTTGTTGAACAAAAGAATGAGAGTTATTGCAGGTGAGTGTGGGGTTACCTTGATATTACTCTGAAGAGAAGCGAATTCAAGATGTGATAGTGGGTTGCTTTTTCTCTGAGTTTTTAGACACTGTAAAGGGAATGAGCAAGCCAGGGCCGCCATTGTTGTTGGTTTCAAAGCTCTGTTTCTTCTCTAATTTCTCAAAGAAGATAAGCCCATTTTTAATTGCAAATTTGAGGTCATGCGAAAGCGACAGGATCACAATTTTCAAAAACATTAATCTTTCATTTTTAAATATC

mRNA sequence

TGGGATTGAGCAGGGAAGTGTCCGGCCCAATGATCCTCGGTGGAATTTAAGAGAAGTGTTTCTAATGGAATTTGTTTTCTCGATTGCCAAACGGGGAAAGATAATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCGCTAAAAATGGGTCGAAGAGTCCAGTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTTTTGAATCATTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAATGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAACAGATTTACTTGCTTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTACTTTCCTCAGATTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACATATCGGGGGGAAGTAAGTAATAAATCTCCAATATATTTTTTGGTTATTGACGTGCCTTTCTCAGAAGTCATGAGCATGGTACTGATACTCATTTTTGCCAATAAATTAGAGAATGTTACTATTTTTTTAGTTCAACAATCTTATTGACGCCCATTTCTTAGAGCTCACTAACCTTTGCATTGATTGACGTACAAAAATTACTTTTTGATGCAACTGTTTCGAGCAAGACATGGAAAGAACAGAAACGTGACGTTATGGATTTACTTAGAAACTTAGGAAAGGGATATAATCTGTATTTCAATGCTTTTTCTTATTTTTCACTGTCTTTGGGCCAAAATCTATGAGAGGTGCTTGTAATTTTCCCCTTAATATATTTTCTATCAACCTGCCTGTAACAGTCCAAGCTCACCGCTAGCAAATACGGTCCTCTTTGGGCTTTCCCTTTCGAGCTTCCTCTCAAGGCTTTGTAAGACGCATCTACGAGGGAGAGGTGTCCACACCCTTATAAACGGTGTTCCCTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCTTCGGGGACCCAGCGTCCTTGCTGGCACTCGTTCCCTTTTCCAATTGATGTGGGACCCCCCAATCCACCCCATTCGAGGCCCAGTGTCCTTGTTGGCACACCGTCTCATGTCCACCCCCTTCGAGGCTCAGCCTCCTTGTTGACACATTGCCCAGTGTCTGACTTTGATACCATTTACAACGGCCTAAGCCCGCCGCTAACAGATATTGTACTCTTTAGGTTTTCCCTTTCAGACTTCCTCTCATGGTTTTTTAGAGCGCGTCTACTAAGGAGAGGTTTCCACATCCTTAAAAATGGTGTTTCATTCTCCTCCCCAATCGATGTGGGATCTCACCCTGCCTTTTTGCGAAAATGGTTTTGTTCTAAATTCTCTTTTATTTATACCTAATGAAGTAAATTCTTGGAATAAAATTTGGAGTATCCTGCACCTAGTTGGTACATGTTGCCATTCGCGCTTGGGCAACCAAATGAATGCTTGTTACGAATTTGTATAGAACAGAAGCTTAGCAGATCTTGGCATGATAATTTGGACATGATGCAGCCTCAACATCTATTGAGAGCCTTTGATTTCTTGGGCTGATCTGCTGAACTCAACTCTTTTTCCTCAAATCTAATTTGTTGGGGTGAAAATGTAAGAATCTATTAGAATCTGTATGTTTGCGCGAAGAAAAATGTACATGAAAGAATATATGAAGAACAAATGAGGTCATACAAGTATCACAGTGACCCTTTTTAGAGGTCGAAAGTTCACTCTGTCCAATGAACAACGGAGATGAAGTTTCAGATTGAGCTACAAGGAGAGAGCCTTCGAAGCCTTATAAAAAATTCTCCCAGCCGTATACCAGATTCTGCCAAAGTAGCACAGAAAGGCGATAGTTTGACACAATACAGGATAAAGAAGATCATTCAAGAAAATTCGAGGTGCATATCCTGACGCGTGTTTAGTTCTGGCCCAAGTTTAAGAGGTTGTTAGCTATTTGAGATGCATCTGAAGATGGCACATCCTGTCACCAAAAAAGTCAGTATTTAATGCCCATCTGCTACATTTACTACTCTCTCTTAATGTCCTCTGGTATTTTTCATATTTTTTTAGTACAGCTTCATATGGTATTTTATAATACACTAATGGAGATTTGAAAGACTTGAATCCATGTACTTGATTCAGATGTTAAACTAAGCTAATGTAGGTGAGAGAGGAGTGCATGTTGATTCATCTATAGTTTAATGACAAAGGTCGCAGCGTTGTACGAATGCAATGAAAATGGAAAAGTATTGCCTATTTTTCTTCTTCTTTATGATTTTCTTTTCCTTTGAAACTGAAATAGCAGATTAGTTGATGATATGATTTGATTAACCTGTGCATTCTATCTGGATTCCACAGTCTCAACATTGCAGTAATGGGAGGAAGCTGAAATTGCAACTTGGTGGAGGAGGATAGAACCAATGGACTTAGTTGGGGTGACAAGCCAACCCTGTGACCAAATCCATTAAAGCAGAGAGAGAAAGAGAGGAGAGGGTTATCTTAGGAACCACACTTTCAAAATGGTATGATATTATACACTTTGAGCTCAAATGCTCATGGCTTTGCCTTTCGAGGCCTCGTACCAATGAAAATGTATTCATCATCCCTTTAATTAGCCAATGTGGCTCCCTCTCAACAATTCTCCCTTTGAATAAAGTATACCATAGAGCCTTTCCCGAGACCTATGGAGTCCTCGAACAGCCTCCCATTAATCGAGGATAAACTCTTTCTTTGGAGCCCTCGAACAAAGTACACTATTTGTTCGACACTTGAGAGTCATATTCGACTTTACTTTCGAGACTCACAACTTCTTTATCTGACACTTAAGGATTCTATTGACATGACTTTGATACCAGATAAGGAACCACAACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTTTTCTTAAAATGCGTCGTACCAACGGAGATGTATTTCTTACTTATAAACCCATAATCATCTCCTTAATTAGCCAACGTGGGCTCCCTCCCAACAACCATCCTCAGCAGGTTGAATTAAAATATCTCGCCCTGCACTCACCATGCTTGCTTTCTCACAGAGATAATGCAGTCACTGTGTCAACTTTTATTGCAGGAACATAAACCTCACTTCTCATACCAAATGAAGTTGCCTAAACTGAAAAAAGAAACAAGGCAAAGATGAAGATTTGGGTCTCGAATATTTGCAGAGGAGATAGAAGGGCCCATCAGAGAAAAGAAAAAAAAAAGTTTGATGTTTGCCAAATGGGGAAGAAAGATGAAGATGCTACCTGCTTCACGTTCTCATATACTTTAGAAGATCAGCAAAAACACAGTGAGGAGAGAAATGAAACAGTGGGGTTTCATTAAAAAAGAAAAGAGATCCAGGGCCGCCATTGTTGTTGTTGAACAAAAGAATGAGAGTTATTGCAGGTGAGTGTGGGGTTACCTTGATATTACTCTGAAGAGAAGCGAATTCAAGATGTGATAGTGGGTTGCTTTTTCTCTGAGTTTTTAGACACTGTAAAGGGAATGAGCAAGCCAGGGCCGCCATTGTTGTTGGTTTCAAAGCTCTGTTTCTTCTCTAATTTCTCAAAGAAGATAAGCCCATTTTTAATTGCAAATTTGAGGTCATGCGAAAGCGACAGGATCACAATTTTCAAAAACATTAATCTTTCATTTTTAAATATC

Coding sequence (CDS)

ATGGAATTTGTTTTCTCGATTGCCAAACGGGGAAAGATAATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCGCTAAAAATGGGTCGAAGAGTCCAGTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTTTTGAATCATTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAATGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAACAGATTTACTTGCTTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTACTTTCCTCAGATTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACATATCGGGGGGAAGTAAGTAA

Protein sequence

MEFVFSIAKRGKIMSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDISGGSK

Homology

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BLAST of Cp4.1LG09g01090 vs. Swiss-Prot
Match: CCB2_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidopsis thaliana GN=CCB2 PE=1 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.2e-82
Identity = 152/263 (57.79%), Postives = 201/263 (76.43%), Query Frame = 1


Query: 34  RAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLN 93
           RA+  ++    T        + ++QLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLN
Sbjct: 19  RAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGFGSLLLLN 78

Query: 94  HFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVL 153
           HF   +++API+ +Q+R+EALG+SLAAFSIALPY+GKFL+G+V   + +LPE  EQ+FV+
Sbjct: 79  HF---SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSVVE-QRSLPEEGEQVFVI 138

Query: 154 SQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGTDLLAWFEEQ 213
           S N+ D++K+DLAWATY+LLRNT++I+VLI +QGELCVRGYWN P+ +S   L  WF+++
Sbjct: 139 SSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQMSKAQLHDWFKKK 198

Query: 214 LQSIGLSALNDALYFPQISESGL-WQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILV 273
           +  IGL+ + + LYFPQ + S L   +LP GTRS+ VQP+ QN     NE +K+ GF+LV
Sbjct: 199 VDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT----NEPQKVNGFLLV 258

Query: 274 ASSLSYAFSDKDRAWIRALATKF 296
           AS+  YA+SDKDRAWI A+A KF
Sbjct: 259 ASTAGYAYSDKDRAWIGAMAEKF 273

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BLAST of Cp4.1LG09g01090 vs. TrEMBL
Match: A0A0A0LBA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180340 PE=4 SV=1)

HSP 1 Score: 471.1 bits (1211), Expect = 1.0e-129
Identity = 236/284 (83.10%), Postives = 257/284 (90.49%), Query Frame = 1


Query: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 73
           M  +I SP PL +L+S   FRAK+ +K P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALSFRAKSKTKGPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 74  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 133
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 134 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 193
           GA+PSGEA LPEG EQIF+LSQ +SDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GALPSGEAILPEGTEQIFLLSQILSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 194 YWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 253
           YWNSPNDIS  DLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 254 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 298
           QNL QSGNE++ +GGFIL+ASSLSYAFSDKDRAWIRA+A KFD+
Sbjct: 241 QNLKQSGNEVQNMGGFILLASSLSYAFSDKDRAWIRAVANKFDD 284

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BLAST of Cp4.1LG09g01090 vs. TrEMBL
Match: W9RWP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015739 PE=4 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 5.9e-101
Identity = 194/294 (65.99%), Postives = 230/294 (78.23%), Query Frame = 1


Query: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKS-PVITARLDDSKNS--PNRQLNLSVLRFTLGI 73
           MS +I+S  PL +L     F  ++ ++   VI++RLDD+  S  PN QLNLSVLRFTLGI
Sbjct: 1   MSNSIVSLSPLSQLKIPTGFGTRSSTRRFSVISSRLDDNSRSGQPNPQLNLSVLRFTLGI 60

Query: 74  PGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGK 133
           PGLDESYLPRWIGYGFGSLL+LNHFVGSNS   ITSAQLRTEALG+SLAAFSI LPYLGK
Sbjct: 61  PGLDESYLPRWIGYGFGSLLVLNHFVGSNSVTDITSAQLRTEALGLSLAAFSIVLPYLGK 120

Query: 134 FL---------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISV 193
           FL         +GA P  + T+PEG+EQIF+LS+NVS+  K+DLAWATYILLRNTN+++V
Sbjct: 121 FLKLYEDEKYLQGATPMDQTTIPEGSEQIFMLSENVSNTEKEDLAWATYILLRNTNTMAV 180

Query: 194 LIQIQGELCVRGYWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLP 253
           LI IQGELCVRGYWN+P D+S TDLL WF  Q++  G+S + D LYFPQIS+SGLW +LP
Sbjct: 181 LISIQGELCVRGYWNTPTDVSKTDLLDWFGRQIEQFGISDVKDTLYFPQISDSGLWDILP 240

Query: 254 KGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
           KGTRSVLVQPV Q  + S   ME   GFILVAS++SYA++ KDRAWI ALA KF
Sbjct: 241 KGTRSVLVQPVPQVPDSSDKTMETNQGFILVASTISYAYNVKDRAWIGALAKKF 294

[Close]

BLAST of Cp4.1LG09g01090 vs. TrEMBL
Match: M5X1L8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009484mg PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 1.0e-100
Identity = 184/279 (65.95%), Postives = 230/279 (82.44%), Query Frame = 1


Query: 19  LSPDPLIRLSSTHRFRAKN-GSKSPVITARLDDSKNSPNR-QLNLSVLRFTLGIPGLDES 78
           LSP+ LI+L    +FRA+N  +    ++ARLD+SK+S    QLNLSVLRFTLGIPGLDES
Sbjct: 8   LSPNSLIQLKIPPKFRARNCRTNFSAVSARLDNSKSSSAEPQLNLSVLRFTLGIPGLDES 67

Query: 79  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 138
           YLPRWIGYGFGSLL+LNHF GS S A  T AQLRTEALG+SLAAFSIALPYLG+FL+GA 
Sbjct: 68  YLPRWIGYGFGSLLILNHFAGSISPASTTPAQLRTEALGLSLAAFSIALPYLGRFLKGAT 127

Query: 139 PSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 198
           P  + ++P G EQIFV+SQNVS+  K+DLAWATYILLRNTN+I+V+I I+ ELCVRGYWN
Sbjct: 128 PMDQTSIPRGCEQIFVISQNVSNTQKEDLAWATYILLRNTNTIAVIISIRNELCVRGYWN 187

Query: 199 SPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 258
            P+D+S T++LAWFE+Q++SIGLS + + LY  QI +SGLW+MLP+GTRS+LVQP+ Q L
Sbjct: 188 IPDDVSKTNVLAWFEKQIESIGLSDVKETLYLSQIEDSGLWEMLPQGTRSLLVQPIVQVL 247

Query: 259 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
             S NE++K  GF+++ASS+ YA+SDKD+AWI A+A KF
Sbjct: 248 PSSDNEIQKSEGFVMLASSMRYAYSDKDKAWIGAIANKF 286

[Close]

BLAST of Cp4.1LG09g01090 vs. TrEMBL
Match: A0A067JER9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26153 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.9e-99
Identity = 186/279 (66.67%), Postives = 225/279 (80.65%), Query Frame = 1


Query: 19  LSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQ--LNLSVLRFTLGIPGLDES 78
           LS  PLI+L+   +FRAK   KS VI +R+D+S+   N+Q  LNLS+LRFT GIPGLDES
Sbjct: 4   LSIHPLIQLNIRPKFRAKVTRKSLVIASRIDNSQTRENQQQELNLSILRFTFGIPGLDES 63

Query: 79  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 138
           YLPRWIGYGFGSLLLLNHF+GSNSAA  +  QLRTEALGISLAAFSIALP+ G+FL+G  
Sbjct: 64  YLPRWIGYGFGSLLLLNHFLGSNSAA--SPPQLRTEALGISLAAFSIALPFFGRFLKGVR 123

Query: 139 PSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 198
           P  +A LP GAEQIF++S+N+ D  K+DLAWATY+LLRNTN+I+VLI IQG LCVRGYW 
Sbjct: 124 PMDQAALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWK 183

Query: 199 SPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 258
           +P+++S   LL WF +Q+ SIGL  L D LYFPQ +ESGLW+MLPKGTRS+LV+PV Q  
Sbjct: 184 TPDNLSKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGLWEMLPKGTRSLLVEPVHQAR 243

Query: 259 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
            +S NEMEKI GF+L+ASS+ YA+ DKDRAWIRA+  KF
Sbjct: 244 AKSANEMEKIEGFVLLASSMEYAYGDKDRAWIRAVTNKF 280

[Close]

BLAST of Cp4.1LG09g01090 vs. TrEMBL
Match: B9ID30_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13640g PE=4 SV=2)

HSP 1 Score: 359.8 bits (922), Expect = 3.4e-96
Identity = 180/278 (64.75%), Postives = 219/278 (78.78%), Query Frame = 1


Query: 19  LSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNS-PNRQLNLSVLRFTLGIPGLDESY 78
           LS  PLI+L + H+FRAK   KS  I A  D+ ++    +QLNLSVLRFT GIPGLDESY
Sbjct: 4   LSIHPLIQLKTHHQFRAKKTRKSIAIHASSDNPQSQRQQQQLNLSVLRFTFGIPGLDESY 63

Query: 79  LPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVP 138
           LPRWIGYGFGSLL+LNHF+GSN     T AQLRTE LG+SLAAFS ALPY G+FL+GA P
Sbjct: 64  LPRWIGYGFGSLLILNHFLGSNPDT--TQAQLRTEVLGLSLAAFSAALPYFGRFLKGATP 123

Query: 139 SGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNS 198
             + TLP+ AEQIF +SQN+SD  K+DLAWATYILLRNTN+I+VLI IQGELCVRGYW +
Sbjct: 124 VDQGTLPQDAEQIFAMSQNISDAQKEDLAWATYILLRNTNTIAVLISIQGELCVRGYWKT 183

Query: 199 PNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNLN 258
            + +S  ++L WF+EQ+++IGLS + D LYFPQ +ES +W+MLP+GTRS+LV+PV Q   
Sbjct: 184 SDKMSKDEVLDWFKEQIENIGLSDVKDTLYFPQTTESEIWEMLPEGTRSLLVEPVLQATV 243

Query: 259 QSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
           QSGN+ E   GFIL+ASS+ YA+SDKDRAWIRA   KF
Sbjct: 244 QSGNKTENNEGFILLASSIGYAYSDKDRAWIRATGNKF 279

[Close]

BLAST of Cp4.1LG09g01090 vs. TAIR10
Match: AT5G52110.1 (AT5G52110.1 Protein of unknown function (DUF2930))

HSP 1 Score: 305.8 bits (782), Expect = 2.9e-83
Identity = 152/263 (57.79%), Postives = 201/263 (76.43%), Query Frame = 1


Query: 34  RAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLN 93
           RA+  ++    T        + ++QLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLN
Sbjct: 19  RAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGFGSLLLLN 78

Query: 94  HFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVL 153
           HF   +++API+ +Q+R+EALG+SLAAFSIALPY+GKFL+G+V   + +LPE  EQ+FV+
Sbjct: 79  HF---SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSVVE-QRSLPEEGEQVFVI 138

Query: 154 SQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGTDLLAWFEEQ 213
           S N+ D++K+DLAWATY+LLRNT++I+VLI +QGELCVRGYWN P+ +S   L  WF+++
Sbjct: 139 SSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQMSKAQLHDWFKKK 198

Query: 214 LQSIGLSALNDALYFPQISESGL-WQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILV 273
           +  IGL+ + + LYFPQ + S L   +LP GTRS+ VQP+ QN     NE +K+ GF+LV
Sbjct: 199 VDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT----NEPQKVNGFLLV 258

Query: 274 ASSLSYAFSDKDRAWIRALATKF 296
           AS+  YA+SDKDRAWI A+A KF
Sbjct: 259 ASTAGYAYSDKDRAWIGAMAEKF 273

[Close]

BLAST of Cp4.1LG09g01090 vs. NCBI nr
Match: gi|659077375|ref|XP_008439172.1| (PREDICTED: uncharacterized protein LOC103484048 isoform X1 [Cucumis melo])

HSP 1 Score: 480.7 bits (1236), Expect = 1.9e-132
Identity = 243/284 (85.56%), Postives = 259/284 (91.20%), Query Frame = 1


Query: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 73
           M  +I SP PL +L+S   FRAK+  K+P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALPFRAKSKMKAPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 74  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 133
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 134 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 193
           GAVPSGEATLPEG EQIF+LSQ VSDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GAVPSGEATLPEGTEQIFLLSQIVSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 194 YWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 253
           YWNSPNDIS  DLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 254 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 298
           QNL QSGNEMEK+GGFIL+ASSLSYAFSDKDRAWIRALA KFD+
Sbjct: 241 QNLKQSGNEMEKMGGFILLASSLSYAFSDKDRAWIRALANKFDD 284

[Close]

BLAST of Cp4.1LG09g01090 vs. NCBI nr
Match: gi|449446061|ref|XP_004140790.1| (PREDICTED: uncharacterized protein LOC101219803 isoform X1 [Cucumis sativus])

HSP 1 Score: 471.1 bits (1211), Expect = 1.5e-129
Identity = 236/284 (83.10%), Postives = 257/284 (90.49%), Query Frame = 1


Query: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 73
           M  +I SP PL +L+S   FRAK+ +K P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALSFRAKSKTKGPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 74  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 133
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 134 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 193
           GA+PSGEA LPEG EQIF+LSQ +SDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GALPSGEAILPEGTEQIFLLSQILSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 194 YWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 253
           YWNSPNDIS  DLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 254 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 298
           QNL QSGNE++ +GGFIL+ASSLSYAFSDKDRAWIRA+A KFD+
Sbjct: 241 QNLKQSGNEVQNMGGFILLASSLSYAFSDKDRAWIRAVANKFDD 284

[Close]

BLAST of Cp4.1LG09g01090 vs. NCBI nr
Match: gi|703141003|ref|XP_010107400.1| (hypothetical protein L484_015739 [Morus notabilis])

HSP 1 Score: 375.6 bits (963), Expect = 8.5e-101
Identity = 194/294 (65.99%), Postives = 230/294 (78.23%), Query Frame = 1


Query: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKS-PVITARLDDSKNS--PNRQLNLSVLRFTLGI 73
           MS +I+S  PL +L     F  ++ ++   VI++RLDD+  S  PN QLNLSVLRFTLGI
Sbjct: 1   MSNSIVSLSPLSQLKIPTGFGTRSSTRRFSVISSRLDDNSRSGQPNPQLNLSVLRFTLGI 60

Query: 74  PGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGK 133
           PGLDESYLPRWIGYGFGSLL+LNHFVGSNS   ITSAQLRTEALG+SLAAFSI LPYLGK
Sbjct: 61  PGLDESYLPRWIGYGFGSLLVLNHFVGSNSVTDITSAQLRTEALGLSLAAFSIVLPYLGK 120

Query: 134 FL---------EGAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISV 193
           FL         +GA P  + T+PEG+EQIF+LS+NVS+  K+DLAWATYILLRNTN+++V
Sbjct: 121 FLKLYEDEKYLQGATPMDQTTIPEGSEQIFMLSENVSNTEKEDLAWATYILLRNTNTMAV 180

Query: 194 LIQIQGELCVRGYWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLP 253
           LI IQGELCVRGYWN+P D+S TDLL WF  Q++  G+S + D LYFPQIS+SGLW +LP
Sbjct: 181 LISIQGELCVRGYWNTPTDVSKTDLLDWFGRQIEQFGISDVKDTLYFPQISDSGLWDILP 240

Query: 254 KGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
           KGTRSVLVQPV Q  + S   ME   GFILVAS++SYA++ KDRAWI ALA KF
Sbjct: 241 KGTRSVLVQPVPQVPDSSDKTMETNQGFILVASTISYAYNVKDRAWIGALAKKF 294

[Close]

BLAST of Cp4.1LG09g01090 vs. NCBI nr
Match: gi|595864362|ref|XP_007211756.1| (hypothetical protein PRUPE_ppa009484mg [Prunus persica])

HSP 1 Score: 374.8 bits (961), Expect = 1.4e-100
Identity = 184/279 (65.95%), Postives = 230/279 (82.44%), Query Frame = 1


Query: 19  LSPDPLIRLSSTHRFRAKN-GSKSPVITARLDDSKNSPNR-QLNLSVLRFTLGIPGLDES 78
           LSP+ LI+L    +FRA+N  +    ++ARLD+SK+S    QLNLSVLRFTLGIPGLDES
Sbjct: 8   LSPNSLIQLKIPPKFRARNCRTNFSAVSARLDNSKSSSAEPQLNLSVLRFTLGIPGLDES 67

Query: 79  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 138
           YLPRWIGYGFGSLL+LNHF GS S A  T AQLRTEALG+SLAAFSIALPYLG+FL+GA 
Sbjct: 68  YLPRWIGYGFGSLLILNHFAGSISPASTTPAQLRTEALGLSLAAFSIALPYLGRFLKGAT 127

Query: 139 PSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 198
           P  + ++P G EQIFV+SQNVS+  K+DLAWATYILLRNTN+I+V+I I+ ELCVRGYWN
Sbjct: 128 PMDQTSIPRGCEQIFVISQNVSNTQKEDLAWATYILLRNTNTIAVIISIRNELCVRGYWN 187

Query: 199 SPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 258
            P+D+S T++LAWFE+Q++SIGLS + + LY  QI +SGLW+MLP+GTRS+LVQP+ Q L
Sbjct: 188 IPDDVSKTNVLAWFEKQIESIGLSDVKETLYLSQIEDSGLWEMLPQGTRSLLVQPIVQVL 247

Query: 259 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
             S NE++K  GF+++ASS+ YA+SDKD+AWI A+A KF
Sbjct: 248 PSSDNEIQKSEGFVMLASSMRYAYSDKDKAWIGAIANKF 286

[Close]

BLAST of Cp4.1LG09g01090 vs. NCBI nr
Match: gi|645234628|ref|XP_008223895.1| (PREDICTED: uncharacterized protein LOC103323666 [Prunus mume])

HSP 1 Score: 373.6 bits (958), Expect = 3.2e-100
Identity = 184/279 (65.95%), Postives = 228/279 (81.72%), Query Frame = 1


Query: 19  LSPDPLIRLSSTHRFRAKN-GSKSPVITARLDDSK-NSPNRQLNLSVLRFTLGIPGLDES 78
           LSP+ LI+L    +FRA+N  +    ++ARLD+SK NS   QLNLSVLRFTLGIPGLDES
Sbjct: 8   LSPNSLIQLKIPPKFRARNCRTNFSAVSARLDNSKSNSAEPQLNLSVLRFTLGIPGLDES 67

Query: 79  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 138
           YLPRWIGYGFGSLL+LNHF GS S A  T AQLRTEALG+SLAAFSIALPYLG+FL+GA 
Sbjct: 68  YLPRWIGYGFGSLLILNHFAGSISPASTTPAQLRTEALGLSLAAFSIALPYLGRFLKGAT 127

Query: 139 PSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 198
           P  + ++P G EQ+FV+SQNVS+  K+DLAWATYILLRNTN+I+V+I I+ ELCVRGYWN
Sbjct: 128 PMDQTSIPRGCEQMFVISQNVSNTQKEDLAWATYILLRNTNTIAVIISIRNELCVRGYWN 187

Query: 199 SPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 258
            P+D+S T++L WFE+Q++SIGLS + + LY  QI +SGLW+MLP+GTRS+LVQP+ Q L
Sbjct: 188 IPDDVSKTNVLGWFEKQIKSIGLSDVKETLYLSQIEDSGLWEMLPQGTRSLLVQPIVQVL 247

Query: 259 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 296
             S NE++K  GF+L+ASS+ YA+ DKD+AWI ALA KF
Sbjct: 248 PSSDNEIQKSEGFVLLASSMRYAYGDKDKAWIGALANKF 286

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g01090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CCB2_ARATH	5.2e-82	57.79	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidop...	[more]

BLAST of Cp4.1LG09g01090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBA9_CUCSA	1.0e-129	83.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180340 PE=4 SV=1	[more]
W9RWP2_9ROSA	5.9e-101	65.99	Uncharacterized protein OS=Morus notabilis GN=L484_015739 PE=4 SV=1	[more]
M5X1L8_PRUPE	1.0e-100	65.95	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009484mg PE=4 SV=1	[more]
A0A067JER9_JATCU	1.9e-99	66.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26153 PE=4 SV=1	[more]
B9ID30_POPTR	3.4e-96	64.75	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s13640g PE=4 SV=2	[more]

BLAST of Cp4.1LG09g01090 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52110.1	2.9e-83	57.79	Protein of unknown function (DUF2930)	[more]

BLAST of Cp4.1LG09g01090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077375\|ref\|XP_008439172.1\|	1.9e-132	85.56	PREDICTED: uncharacterized protein LOC103484048 isoform X1 [Cucumis melo]	[more]
gi\|449446061\|ref\|XP_004140790.1\|	1.5e-129	83.10	PREDICTED: uncharacterized protein LOC101219803 isoform X1 [Cucumis sativus]	[more]
gi\|703141003\|ref\|XP_010107400.1\|	8.5e-101	65.99	hypothetical protein L484_015739 [Morus notabilis]	[more]
gi\|595864362\|ref\|XP_007211756.1\|	1.4e-100	65.95	hypothetical protein PRUPE_ppa009484mg [Prunus persica]	[more]
gi\|645234628\|ref\|XP_008223895.1\|	3.2e-100	65.95	PREDICTED: uncharacterized protein LOC103323666 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021325	CCB2/CCB4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g01090.1	Cp4.1LG09g01090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	DUF2930	coord: 78..295 score: 3.0
None	No IPR available	PANTHER	PTHR36403	FAMILY NOT NAMED	coord: 44..299 score: 1.1E
None	No IPR available	PANTHER	PTHR36403:SF1	SUBFAMILY NOT NAMED	coord: 44..299 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g01090	Cucsa.250950	Cucumber (Gy14) v1	cgycpeB0668
Cp4.1LG09g01090	CmaCh18G012250	Cucurbita maxima (Rimu)	cmacpeB415
Cp4.1LG09g01090	CmoCh18G012450	Cucurbita moschata (Rifu)	cmocpeB376
Cp4.1LG09g01090	Cla006206	Watermelon (97103) v1	cpewmB032
Cp4.1LG09g01090	Csa3G180340	Cucumber (Chinese Long) v2	cpecuB039
Cp4.1LG09g01090	MELO3C006877	Melon (DHL92) v3.5.1	cpemeB043
Cp4.1LG09g01090	ClCG05G007830	Watermelon (Charleston Gray)	cpewcgB046
Cp4.1LG09g01090	CSPI03G16650	Wild cucumber (PI 183967)	cpecpiB034
Cp4.1LG09g01090	Lsi05G012580	Bottle gourd (USVL1VR-Ls)	cpelsiB035
Cp4.1LG09g01090	MELO3C031805.2	Melon (DHL92) v3.6.1	cpemedB050
Cp4.1LG09g01090	CsaV3_3G016830	Cucumber (Chinese Long) v3	cpecucB0039
Cp4.1LG09g01090	Bhi01G000993	Wax gourd	cpewgoB0025
Cp4.1LG09g01090	CsGy3G016760	Cucumber (Gy14) v2	cgybcpeB287
Cp4.1LG09g01090	Carg26820	Silver-seed gourd	carcpeB0008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g01090	Cucurbita pepo (Zucchini)	cpecpeB023
Cp4.1LG09g01090	Cucurbita pepo (Zucchini)	cpecpeB057
Cp4.1LG09g01090	Cucurbita pepo (Zucchini)	cpecpeB058
Cp4.1LG09g01090	Cucumber (Gy14) v1	cgycpeB0788
Cp4.1LG09g01090	Cucurbita maxima (Rimu)	cmacpeB339
Cp4.1LG09g01090	Cucurbita maxima (Rimu)	cmacpeB598
Cp4.1LG09g01090	Cucurbita moschata (Rifu)	cmocpeB303
Cp4.1LG09g01090	Cucurbita moschata (Rifu)	cmocpeB546
Cp4.1LG09g01090	Wild cucumber (PI 183967)	cpecpiB040
Cp4.1LG09g01090	Cucumber (Chinese Long) v2	cpecuB046
Cp4.1LG09g01090	Watermelon (Charleston Gray)	cpewcgB023
Cp4.1LG09g01090	Watermelon (97103) v1	cpewmB036
Cp4.1LG09g01090	Melon (DHL92) v3.5.1	cpemeB020
Cp4.1LG09g01090	Cucumber (Gy14) v2	cgybcpeB584
Cp4.1LG09g01090	Melon (DHL92) v3.6.1	cpemedB024
Cp4.1LG09g01090	Silver-seed gourd	carcpeB0994
Cp4.1LG09g01090	Silver-seed gourd	carcpeB1214
Cp4.1LG09g01090	Silver-seed gourd	carcpeB1267
Cp4.1LG09g01090	Cucumber (Chinese Long) v3	cpecucB0045