Carg26820 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26820
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_340 : 128821 .. 131876 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCCAAACGGGGAAAGATAATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCACTAAAAATGGGTCGAAGAGTCCATTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGTATCTCTTTCTCTTCCTCTATTGTAAATGCGTAATTTCTGAAGGAATTTGATAACATTTCTTTGGAATGGGTTTAGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTCTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAGTAAGCAATCACAGTTTTCTGGGAACGCCTTTACTTTTAGGTTCTTGTTGGGGTTTTCGTTATTTCTGCTATTTGATGTGTTTTTTTTTTTTTTGGTAGAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGTAACATACGAGATATTACATTGTTGTCCTGATTATACAGTAATTTTTTAATGTTCTTCTTCTACTTGCTGGGAAACTTCCGTTAATCTCTGTAAGAGTGTGGAAAAAGGAGGATTCGAGGGACTTGAAACTGCTGGCTTGTGTAGTACTTAAAGATCAAGTAGGGATTGTGATGGAAAATAAGAGACTGGGACGGGGGGGCATATATATTTGATGGATCTTGTTAAAATAATGACCTTAATGATGACTGGAGAGCTAACTTTTGGGTGATTGTTTGGGAAAGCTTTGCTATCAAAGTGTCCTGATTTTGTACCTATGTAGAACTCTAAGTGGTGAAGTATTAGATTGAGATGAACTTTTATGTGACCGGATTTGTAAAATAAAATTGTATCTAGAACCGGACGGGCATCTGAATCCTTCATGAAGGCCCCAAAGCTCAGTTGGTAGAGCTCCACTCTTGCAATTGGGTGGTTGTGGTTACGGGTAGGATGTCTAATTGTCCAAGCGATCGATTTCGGTTGGGTGGATGCCTAATGACAATCCTATCTAATAAGTTCAAAGATGCTTCACCTGTTCAATCCAACTCTTCCCAAAGTTGATCCAGCCTCCCTTGAATGTGAATAAGATTGTCATTCTAACCCTGATGGTTTTCTAAACATTCTACGTGTAGTGTTCATCTCGGAATCTTCTTGAAGATTGAAGCTCTCTTATTCGTCCTCTATCCTGCGTAATTTTCTTTTCTAACGTCCTGTTATTGTTAATTCAATTTGGCTCAAATGTCACCTCAGATCTCTTTATCTAGCCTTCCGTCTCTGATAATGACTTATTTGGTAACTGCTCAAGCTTACCGCTAGCAGATATTGTCTTTTTTGGGCTTTTCCTTTTGGGATTTTTAAAACGGTGTGTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTACTCACCAACCATGGTGGGATCTCACAATCCACCCCATTCGGGGTTCAACAATTCTCCTCTCCAACCAACGTAGGATCTCCCATATTTGCTAGGACCATACAAAAAAAGAAGTCTCACCACCTCCTTATATAAGATGTTCTCACATTGCTGACGAAGCCATTATCACTTTTTTGTTCTACATTCTAGCATCATACCATTCCATGAGTTGCTGACTCGCGTATTAGAGCAACTTCATCAGCACCCTGTTGATGCCTAGTTGAAGCATTGGGACTTTTGCTTGCAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAGTGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGGTATGGTATCTCACCCATTTTTGTAGTTAGAGAACACGCTGTGTTCAAAAGATTAAATTATTTAGCTTCCCTCGACAATGTCTAAATTTTAATTTTTGCATTTATCTTTGGAATCAGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTATTTTCCTCAGATTTCAGGTATATGATTGCATTTTTAAGGTCTTTTTTGCTCTCTTGCTGCACATGGAATAATGTCTTAGAAACGACCATAATTAGTGGAGAAAACGTTGTTATCTCCTTAAAAATCAACCGCTATCAATATTTGAAGACATCTGCAATGTCATATTGGTTTCTTTTCCTTATGGTGATGAGATGTTTCTCCTGGTTGCTTTTCTGATGAAACATGCATTGATAGTAATAGTTAAACAAATGCTATGATGTTCTATGAAACCTTTCAAAATCATGGTTTTCATAACTTTTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACCTATCGGGGGGAAGTGAGTAATAAATCTCCAATATATTTTTTGGTTATTGACGTGCCTTTCTCAGAAGTCATGAGCATGGTACTGATACTCATTTTTGCCAATAAAATAGAGAATATTACTATTTTTTTAGTTCAACGATCTTATTGACGCCCATTTCTTAGAGCTCACTAAGCTTTGCATTGATTGACGTACAAAAATTACTTTTTGATGCAACTGTTTCGAGCAAGACATGGAAAGAACAGAAACGTGACGCTGTGGATTTACTTAGAAACTTAGGAAAGGGATATAATCTCTATTTCAATGCCTTTTCTTATTTCTTCGGTCTTTGGGCCAAAATCCATGAGAGGTGCTTGTAATTTTCCC

mRNA sequence

ATTGCCAAACGGGGAAAGATAATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCACTAAAAATGGGTCGAAGAGTCCATTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTCTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAGTGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTATTTTCCTCAGATTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACCTATCGGGGGGAAGTGAGTAATAAATCTCCAATATATTTTTTGGTTATTGACGTGCCTTTCTCAGAAGTCATGAGCATGGTACTGATACTCATTTTTGCCAATAAAATAGAGAATATTACTATTTTTTTAGTTCAACGATCTTATTGACGCCCATTTCTTAGAGCTCACTAAGCTTTGCATTGATTGACGTACAAAAATTACTTTTTGATGCAACTGTTTCGAGCAAGACATGGAAAGAACAGAAACGTGACGCTGTGGATTTACTTAGAAACTTAGGAAAGGGATATAATCTCTATTTCAATGCCTTTTCTTATTTCTTCGGTCTTTGGGCCAAAATCCATGAGAGGTGCTTGTAATTTTCCC

Coding sequence (CDS)

ATGAGCTGCACAATTCTCTCTCCCGACCCGTTAATTCGGTTGTCATCCACTCACCGATTTCGCACTAAAAATGGGTCGAAGAGTCCATTGATTACTGCTCGTCTTGACGATTCTAAGAACTCGCCCAATCGCCAACTCAATCTCTCTGTTCTTCGCTTCACACTTGGGATTCCTGGATTGGATGAGTCTTACTTACCCAGATGGATTGGTTATGGATTTGGTTCGCTTCTGCTCTTGAATCACTTTGTTGGTTCGAATTCAGCTGCTCCCATCACCTCAGCACAGTTAAGAACTGAGGCTTTAGGCATTTCCTTGGCTGCATTTTCTATTGCACTCCCCTACTTGGGAAAGTTTCTTGAGGGTGCAGTTCCATCTGGCGAAGCTACCCTCCCTGAAGGTGCCGAGCAAATATTTGTCTTGTCACAAAGTGTATCGGATAATGTGAAGGATGACTTGGCTTGGGCAACATACATCTTGCTGCGCAATACAAACAGTATATCAGTGTTAATACAGATTCAAGGGGAGTTATGCGTTCGAGGATACTGGAATAGTCCAAATGATATATCAGGAGCAGATTTACTTGCCTGGTTTGAGGAGCAGCTTCAGAGCATTGGCCTATCTGCATTAAATGATGCCCTCTATTTTCCTCAGATTTCAGAATCTGGACTTTGGCAAATGCTGCCTAAGGGCACTCGCTCAGTTTTGGTACAGCCAGTGGCTCAAAATCTAAACCAAAGTGGCAATGAGATGGAAAAGATTGGAGGGTTCATATTGGTGGCTTCAAGTTTAAGTTATGCATTTAGTGATAAAGATAGAGCCTGGATAAGAGCTCTTGCTACCAAGTTTGATAATGGGGACCTATCGGGGGGAAGTGAGTAA

Protein sequence

MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDLSGGSE

Homology

[Close]

BLAST of Carg26820 vs. NCBI nr
Match: XP_023542853.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542854.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542855.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542856.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542857.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542858.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023542859.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568.9 bits (1465), Expect = 9.7e-159
Identity = 286/291 (98.28%), Postives = 289/291 (99.31%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           MSCTILSPDPLIRLSSTHRFR KNGSKSP+ITARLDDSKNSPNRQLNLSVLRFTLGIPGL
Sbjct: 14  MSCTILSPDPLIRLSSTHRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 73

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE
Sbjct: 74  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 133

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEGAEQIFVLSQ+VSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG
Sbjct: 134 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 193

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDISG DLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA
Sbjct: 194 YWNSPNDISGTDLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 253

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDLSGGS 292
           QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGD+SGGS
Sbjct: 254 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDISGGS 304

[Close]

BLAST of Carg26820 vs. NCBI nr
Match: XP_022945332.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945333.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945334.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945335.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945336.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945337.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945338.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945339.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945340.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata] >XP_022945341.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 563.9 bits (1452), Expect = 3.1e-157
Identity = 285/291 (97.94%), Postives = 289/291 (99.31%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           MSCTILSPDPLIRLSST RFR KNGSKSP+ITARLDDSKNSP+RQLNLSVLRFTLGIPGL
Sbjct: 17  MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPSRQLNLSVLRFTLGIPGL 76

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAPITSAQLRTEALGISLAAFSIALPYLGKFLE
Sbjct: 77  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 136

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG
Sbjct: 137 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 196

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA
Sbjct: 197 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 256

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDLSGGS 292
           QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGD+SGGS
Sbjct: 257 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDISGGS 307

[Close]

BLAST of Carg26820 vs. NCBI nr
Match: XP_022968395.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 554.7 bits (1428), Expect = 1.9e-154
Identity = 281/291 (96.56%), Postives = 286/291 (98.28%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           MSCTILSPDPLIRLSST RFR KNGSKSP+ITARLDDSKNSPNRQLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAPITSAQLRTEALGISLAAFSIALPYLGKFLE
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEGAEQIFVLSQ+VSDNVKDDLAWATYILLRNTNSISVLI IQGELCVRG
Sbjct: 121 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLILIQGELCVRG 180

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDISGADLLAWFEEQLQSIGLSALND+LYFPQISESGLWQML KGTRSVLVQPVA
Sbjct: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESGLWQMLSKGTRSVLVQPVA 240

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDLSGGS 292
           QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGD+S GS
Sbjct: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDISWGS 291

[Close]

BLAST of Carg26820 vs. NCBI nr
Match: XP_022968386.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968387.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968388.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968389.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968390.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968391.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968393.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima] >XP_022968394.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 553.5 bits (1425), Expect = 4.2e-154
Identity = 280/290 (96.55%), Postives = 285/290 (98.28%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           MSCTILSPDPLIRLSST RFR KNGSKSP+ITARLDDSKNSPNRQLNLSVLRFTLGIPGL
Sbjct: 1   MSCTILSPDPLIRLSSTPRFRAKNGSKSPVITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGS+SAAPITSAQLRTEALGISLAAFSIALPYLGKFLE
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSSSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEGAEQIFVLSQ+VSDNVKDDLAWATYILLRNTNSISVLI IQGELCVRG
Sbjct: 121 GAVPSGEATLPEGAEQIFVLSQNVSDNVKDDLAWATYILLRNTNSISVLILIQGELCVRG 180

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDISGADLLAWFEEQLQSIGLSALND+LYFPQISESGLWQML KGTRSVLVQPVA
Sbjct: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDSLYFPQISESGLWQMLSKGTRSVLVQPVA 240

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDLSGG 291
           QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGD+S G
Sbjct: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDNGDISWG 290

[Close]

BLAST of Carg26820 vs. NCBI nr
Match: XP_016899091.1 (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucumis melo] >XP_016899092.1 PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 479.6 bits (1233), Expect = 7.8e-132
Identity = 243/284 (85.56%), Postives = 259/284 (91.20%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           M  +I SP PL +L+S   FR K+  K+P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALPFRAKSKMKAPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEG EQIF+LSQ VSDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GAVPSGEATLPEGTEQIFLLSQIVSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDIS ADLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 285
           QNL QSGNEMEK+GGFIL+ASSLSYAFSDKDRAWIRALA KFD+
Sbjct: 241 QNLKQSGNEMEKMGGFILLASSLSYAFSDKDRAWIRALANKFDD 284

[Close]

BLAST of Carg26820 vs. TAIR10
Match: AT5G52110.1 (Protein of unknown function (DUF2930))

HSP 1 Score: 304.7 bits (779), Expect = 6.2e-83
Identity = 153/260 (58.85%), Postives = 203/260 (78.08%), Query Frame = 0


Query: 27  KSPLITARLDD---SKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFV 86
           +S  I AR ++      + ++QLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLNHF 
Sbjct: 22  RSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGFGSLLLLNHF- 81

Query: 87  GSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVLSQS 146
             +++API+ +Q+R+EALG+SLAAFSIALPY+GKFL+G+V   + +LPE  EQ+FV+S +
Sbjct: 82  --SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSVVE-QRSLPEEGEQVFVISSN 141

Query: 147 VSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGADLLAWFEEQLQS 206
           + D++K+DLAWATY+LLRNT++I+VLI +QGELCVRGYWN P+ +S A L  WF++++  
Sbjct: 142 IGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQMSKAQLHDWFKKKVDE 201

Query: 207 IGLSALNDALYFPQISESGL-WQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASS 266
           IGL+ + + LYFPQ + S L   +LP GTRS+ VQP+ QN     NE +K+ GF+LVAS+
Sbjct: 202 IGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT----NEPQKVNGFLLVAST 261

Query: 267 LSYAFSDKDRAWIRALATKF 283
             YA+SDKDRAWI A+A KF
Sbjct: 262 AGYAYSDKDRAWIGAMAEKF 273

[Close]

BLAST of Carg26820 vs. Swiss-Prot
Match: sp|Q9FJ81|CCB2_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB2 PE=1 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-81
Identity = 153/260 (58.85%), Postives = 203/260 (78.08%), Query Frame = 0


Query: 27  KSPLITARLDD---SKNSPNRQLNLSVLRFTLGIPGLDESYLPRWIGYGFGSLLLLNHFV 86
           +S  I AR ++      + ++QLNLSVLRFT GIPG DESYLPRWIGYGFGSLLLLNHF 
Sbjct: 22  RSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGFGSLLLLNHF- 81

Query: 87  GSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAVPSGEATLPEGAEQIFVLSQS 146
             +++API+ +Q+R+EALG+SLAAFSIALPY+GKFL+G+V   + +LPE  EQ+FV+S +
Sbjct: 82  --SASAPISESQMRSEALGLSLAAFSIALPYIGKFLKGSVVE-QRSLPEEGEQVFVISSN 141

Query: 147 VSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWNSPNDISGADLLAWFEEQLQS 206
           + D++K+DLAWATY+LLRNT++I+VLI +QGELCVRGYWN P+ +S A L  WF++++  
Sbjct: 142 IGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQMSKAQLHDWFKKKVDE 201

Query: 207 IGLSALNDALYFPQISESGL-WQMLPKGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASS 266
           IGL+ + + LYFPQ + S L   +LP GTRS+ VQP+ QN     NE +K+ GF+LVAS+
Sbjct: 202 IGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNT----NEPQKVNGFLLVAST 261

Query: 267 LSYAFSDKDRAWIRALATKF 283
             YA+SDKDRAWI A+A KF
Sbjct: 262 AGYAYSDKDRAWIGAMAEKF 273

[Close]

BLAST of Carg26820 vs. TrEMBL
Match: tr|A0A1S4DSW9|A0A1S4DSW9_CUCME (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484048 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 5.1e-132
Identity = 243/284 (85.56%), Postives = 259/284 (91.20%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           M  +I SP PL +L+S   FR K+  K+P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALPFRAKSKMKAPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GAVPSGEATLPEG EQIF+LSQ VSDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GAVPSGEATLPEGTEQIFLLSQIVSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDIS ADLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 285
           QNL QSGNEMEK+GGFIL+ASSLSYAFSDKDRAWIRALA KFD+
Sbjct: 241 QNLKQSGNEMEKMGGFILLASSLSYAFSDKDRAWIRALANKFDD 284

[Close]

BLAST of Carg26820 vs. TrEMBL
Match: tr|A0A0A0LBA9|A0A0A0LBA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180340 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 4.1e-129
Identity = 236/284 (83.10%), Postives = 257/284 (90.49%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQLNLSVLRFTLGIPGL 60
           M  +I SP PL +L+S   FR K+ +K P I+ARLDDSKNS N+QLNLSVLRFTLGIPGL
Sbjct: 1   MISSIPSPSPLNQLTSALSFRAKSKTKGPAISARLDDSKNSANQQLNLSVLRFTLGIPGL 60

Query: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLE 120
           DESYLPRWIGYGFGSLLLLNHFVGSNSAA  T AQLRTEALGISLAAFSIALPYLGKFL+
Sbjct: 61  DESYLPRWIGYGFGSLLLLNHFVGSNSAALTTPAQLRTEALGISLAAFSIALPYLGKFLK 120

Query: 121 GAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRG 180
           GA+PSGEA LPEG EQIF+LSQ +SDN+K+D+AWATYILLRNTNSISVLIQ QG LCVRG
Sbjct: 121 GALPSGEAILPEGTEQIFLLSQILSDNLKEDIAWATYILLRNTNSISVLIQTQGALCVRG 180

Query: 181 YWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVA 240
           YWNSPNDIS ADLLAWFEEQLQSIGLSAL DA+YFPQISESGLWQMLPKGTRSVLVQPV 
Sbjct: 181 YWNSPNDISSADLLAWFEEQLQSIGLSALKDAVYFPQISESGLWQMLPKGTRSVLVQPVV 240

Query: 241 QNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKFDN 285
           QNL QSGNE++ +GGFIL+ASSLSYAFSDKDRAWIRA+A KFD+
Sbjct: 241 QNLKQSGNEVQNMGGFILLASSLSYAFSDKDRAWIRAVANKFDD 284

[Close]

BLAST of Carg26820 vs. TrEMBL
Match: tr|W9RWP2|W9RWP2_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015739 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.0e-99
Identity = 192/294 (65.31%), Postives = 230/294 (78.23%), Query Frame = 0


Query: 1   MSCTILSPDPLIRLSSTHRFRTKNGSKS-PLITARLDDSKNS--PNRQLNLSVLRFTLGI 60
           MS +I+S  PL +L     F T++ ++   +I++RLDD+  S  PN QLNLSVLRFTLGI
Sbjct: 1   MSNSIVSLSPLSQLKIPTGFGTRSSTRRFSVISSRLDDNSRSGQPNPQLNLSVLRFTLGI 60

Query: 61  PGLDESYLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGK 120
           PGLDESYLPRWIGYGFGSLL+LNHFVGSNS   ITSAQLRTEALG+SLAAFSI LPYLGK
Sbjct: 61  PGLDESYLPRWIGYGFGSLLVLNHFVGSNSVTDITSAQLRTEALGLSLAAFSIVLPYLGK 120

Query: 121 F---------LEGAVPSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISV 180
           F         L+GA P  + T+PEG+EQIF+LS++VS+  K+DLAWATYILLRNTN+++V
Sbjct: 121 FLKLYEDEKYLQGATPMDQTTIPEGSEQIFMLSENVSNTEKEDLAWATYILLRNTNTMAV 180

Query: 181 LIQIQGELCVRGYWNSPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLP 240
           LI IQGELCVRGYWN+P D+S  DLL WF  Q++  G+S + D LYFPQIS+SGLW +LP
Sbjct: 181 LISIQGELCVRGYWNTPTDVSKTDLLDWFGRQIEQFGISDVKDTLYFPQISDSGLWDILP 240

Query: 241 KGTRSVLVQPVAQNLNQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 283
           KGTRSVLVQPV Q  + S   ME   GFILVAS++SYA++ KDRAWI ALA KF
Sbjct: 241 KGTRSVLVQPVPQVPDSSDKTMETNQGFILVASTISYAYNVKDRAWIGALAKKF 294

[Close]

BLAST of Carg26820 vs. TrEMBL
Match: tr|M5X1L8|M5X1L8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G077000 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 1.7e-98
Identity = 181/279 (64.87%), Postives = 228/279 (81.72%), Query Frame = 0


Query: 6   LSPDPLIRLSSTHRFRTKN-GSKSPLITARLDDSK-NSPNRQLNLSVLRFTLGIPGLDES 65
           LSP+ LI+L    +FR +N  +    ++ARLD+SK +S   QLNLSVLRFTLGIPGLDES
Sbjct: 8   LSPNSLIQLKIPPKFRARNCRTNFSAVSARLDNSKSSSAEPQLNLSVLRFTLGIPGLDES 67

Query: 66  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 125
           YLPRWIGYGFGSLL+LNHF GS S A  T AQLRTEALG+SLAAFSIALPYLG+FL+GA 
Sbjct: 68  YLPRWIGYGFGSLLILNHFAGSISPASTTPAQLRTEALGLSLAAFSIALPYLGRFLKGAT 127

Query: 126 PSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 185
           P  + ++P G EQIFV+SQ+VS+  K+DLAWATYILLRNTN+I+V+I I+ ELCVRGYWN
Sbjct: 128 PMDQTSIPRGCEQIFVISQNVSNTQKEDLAWATYILLRNTNTIAVIISIRNELCVRGYWN 187

Query: 186 SPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 245
            P+D+S  ++LAWFE+Q++SIGLS + + LY  QI +SGLW+MLP+GTRS+LVQP+ Q L
Sbjct: 188 IPDDVSKTNVLAWFEKQIESIGLSDVKETLYLSQIEDSGLWEMLPQGTRSLLVQPIVQVL 247

Query: 246 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 283
             S NE++K  GF+++ASS+ YA+SDKD+AWI A+A KF
Sbjct: 248 PSSDNEIQKSEGFVMLASSMRYAYSDKDKAWIGAIANKF 286

[Close]

BLAST of Carg26820 vs. TrEMBL
Match: tr|A0A067JER9|A0A067JER9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26153 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 6.3e-98
Identity = 184/279 (65.95%), Postives = 225/279 (80.65%), Query Frame = 0


Query: 6   LSPDPLIRLSSTHRFRTKNGSKSPLITARLDDSKNSPNRQ--LNLSVLRFTLGIPGLDES 65
           LS  PLI+L+   +FR K   KS +I +R+D+S+   N+Q  LNLS+LRFT GIPGLDES
Sbjct: 4   LSIHPLIQLNIRPKFRAKVTRKSLVIASRIDNSQTRENQQQELNLSILRFTFGIPGLDES 63

Query: 66  YLPRWIGYGFGSLLLLNHFVGSNSAAPITSAQLRTEALGISLAAFSIALPYLGKFLEGAV 125
           YLPRWIGYGFGSLLLLNHF+GSNSAA  +  QLRTEALGISLAAFSIALP+ G+FL+G  
Sbjct: 64  YLPRWIGYGFGSLLLLNHFLGSNSAA--SPPQLRTEALGISLAAFSIALPFFGRFLKGVR 123

Query: 126 PSGEATLPEGAEQIFVLSQSVSDNVKDDLAWATYILLRNTNSISVLIQIQGELCVRGYWN 185
           P  +A LP GAEQIF++S+++ D  K+DLAWATY+LLRNTN+I+VLI IQG LCVRGYW 
Sbjct: 124 PMDQAALPGGAEQIFLMSENIFDTQKEDLAWATYVLLRNTNTIAVLISIQGGLCVRGYWK 183

Query: 186 SPNDISGADLLAWFEEQLQSIGLSALNDALYFPQISESGLWQMLPKGTRSVLVQPVAQNL 245
           +P+++S A LL WF +Q+ SIGL  L D LYFPQ +ESGLW+MLPKGTRS+LV+PV Q  
Sbjct: 184 TPDNLSKAQLLDWFLKQIDSIGLFDLRDTLYFPQTAESGLWEMLPKGTRSLLVEPVHQAR 243

Query: 246 NQSGNEMEKIGGFILVASSLSYAFSDKDRAWIRALATKF 283
            +S NEMEKI GF+L+ASS+ YA+ DKDRAWIRA+  KF
Sbjct: 244 AKSANEMEKIEGFVLLASSMEYAYGDKDRAWIRAVTNKF 280

The following BLAST results are available for this feature:

BLAST of Carg26820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542853.1	9.7e-159	98.28	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita ...	[more]
XP_022945332.1	3.1e-157	97.94	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic [Cucurbita ...	[more]
XP_022968395.1	1.9e-154	96.56	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X2 ...	[more]
XP_022968386.1	4.2e-154	96.55	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]
XP_016899091.1	7.8e-132	85.56	PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic ...	[more]

BLAST of Carg26820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52110.1	6.2e-83	58.85	Protein of unknown function (DUF2930)	[more]

BLAST of Carg26820 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJ81\|CCB2_ARATH	1.1e-81	58.85	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic OS=Arabidop...	[more]

BLAST of Carg26820 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSW9\|A0A1S4DSW9_CUCME	5.1e-132	85.56	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic isoform X1 ...	[more]
tr\|A0A0A0LBA9\|A0A0A0LBA9_CUCSA	4.1e-129	83.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180340 PE=4 SV=1	[more]
tr\|W9RWP2\|W9RWP2_9ROSA	2.0e-99	65.31	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_015739 PE=4 SV=1	[more]
tr\|M5X1L8\|M5X1L8_PRUPE	1.7e-98	64.87	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G077000 PE=4 SV=1	[more]
tr\|A0A067JER9\|A0A067JER9_JATCU	6.3e-98	65.95	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26153 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021325	CCB2/CCB4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26820-RA	Carg26820-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4	PFAM	PF11152	CCB2_CCB4	coord: 65..282 e-value: 1.2E-58 score: 197.5
None	No IPR available	PANTHER	PTHR36403	FAMILY NOT NAMED	coord: 18..283

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26820	Cla006206	Watermelon (97103) v1	carwmB0009
Carg26820	Csa3G180340	Cucumber (Chinese Long) v2	carcuB0007
Carg26820	MELO3C006877	Melon (DHL92) v3.5.1	carmeB0005
Carg26820	ClCG05G007830	Watermelon (Charleston Gray)	carwcgB0007
Carg26820	CSPI03G16650	Wild cucumber (PI 183967)	carcpiB0007
Carg26820	Cucsa.250950	Cucumber (Gy14) v1	carcgyB0006
Carg26820	CmaCh18G012250	Cucurbita maxima (Rimu)	carcmaB0011
Carg26820	CmoCh18G012450	Cucurbita moschata (Rifu)	carcmoB0011
Carg26820	Lsi05G012580	Bottle gourd (USVL1VR-Ls)	carlsiB006
Carg26820	Cp4.1LG09g01090	Cucurbita pepo (Zucchini)	carcpeB0008
Carg26820	CsGy3G016760	Cucumber (Gy14) v2	carcgybB0006
Carg26820	CsaV3_3G016830	Cucumber (Chinese Long) v3	carcucB0007
Carg26820	Cla97C05G089800	Watermelon (97103) v2	carwmbB0006
Carg26820	Bhi01G000993	Wax gourd	carwgoB0008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg26820	Silver-seed gourd	carcarB005
Carg26820	Cucurbita maxima (Rimu)	carcmaB0010
Carg26820	Cucurbita moschata (Rifu)	carcmoB0010
Carg26820	Melon (DHL92) v3.6.1	carmedB0006