Cp4.1LG08g12740 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g12740
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Zinc finger family protein
Location	Cp4.1LG08 : 9285380 .. 9286069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAACGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCAACCAACTCACAACCGCGACAATAACCCTAACCCCACAACGGAACACTCATCCTACTCCGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGGCCTGTTCGATGTCGGAACGTCGTACGAGAACATCGTAGGAAGTTCCGAGGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGGGGGAGAAGAGGAGGAGGAGCAGCAGCCGCCGCCGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTGACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

mRNA sequence

ATGGAGAAGAACGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCAACCAACTCACAACCGCGACAATAACCCTAACCCCACAACGGAACACTCATCCTACTCCGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGGCCTGTTCGATGTCGGAACGTCGTACGAGAACATCGTAGGAAGTTCCGAGGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGGGGGAGAAGAGGAGGAGGAGCAGCAGCCGCCGCCGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTGACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

Coding sequence (CDS)

ATGGAGAAGAACGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAACGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCAACCAACTCACAACCGCGACAATAACCCTAACCCCACAACGGAACACTCATCCTACTCCGACAGGCTACCAGTACCTCCCGCCGCCGAGACTAGTCGGCGGGATGGCCTGTTCGATGTCGGAACGTCGTACGAGAACATCGTAGGAAGTTCCGAGGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGGGGGAGAAGAGGAGGAGGAGCAGCAGCCGCCGCCGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAACCCTCCACTGCTGACGACGGTGACTCGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

Protein sequence

MEKNANTNVPPETSSDQRHGGERSPTGPTSPQPTHNRDNNPNPTTEHSSYSDRLPVPPAAETSRRDGLFDVGTSYENIVGSSEGEPGKKRGRGGGEEEEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADPPPGSDDED

Homology

[Close]

BLAST of Cp4.1LG08g12740 vs. Swiss-Prot
Match: ZAT3_ARATH (Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 40/115 (34.78%), Postives = 54/115 (46.96%), Query Frame = 1


Query: 49  SYSDR---LPVPPAAETSRRDGL-FDVGTSYENIVGSSEGEPGKKRGRGGGEEEEEQQPP 108
           SY DR   +P+ P+  ++    L F + +SY++        P KKR +            
Sbjct: 6   SYDDRSFHIPLHPSNTSNPNPNLQFALSSSYDH-------SPKKKRTKTVASSSSSSPKS 65

Query: 109 PQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP 160
             + K  KK       PK    C  C + F SWKALFGH+R HPER +RG  PPP
Sbjct: 66  ASKPKYTKKPDP--NAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPP 111

[Close]

BLAST of Cp4.1LG08g12740 vs. TrEMBL
Match: A0A0A0L0X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G001720 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-69
Identity = 160/247 (64.78%), Postives = 176/247 (71.26%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQRHGGERSPTGPTSPQPTHNRDNNPNPTTEHSSY 60
           MEKN NTN             ETS DQRH  ERSP   + P P    D+  NP T+    
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHRRERSPMAASPPPPARIIDDINNPPTDVIEP 60

Query: 61  SDRLPVPPAAETSRRD--------GLFDVGTS-YENIVGSSEGEPGKKRGRGGGEEEEEQ 120
           S  + V      +  D         +FDVGTS +E++ GSS+ E GKKRGRG G E++  
Sbjct: 61  SSSIVVAAPESVTPGDVRRRQSVNAMFDVGTSSHEHVGGSSDVEAGKKRGRGDGGEQQ-- 120

Query: 121 QPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180
               QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA
Sbjct: 121 ----QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180

Query: 181 AELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADP 229
           AELDIRRCQQQLASTLLTVAQ+V+ASRRGLDIDLNQPSTADDGDSP+ T   GFDLN +P
Sbjct: 181 AELDIRRCQQQLASTLLTVAQQVSASRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLEP 240

[Close]

BLAST of Cp4.1LG08g12740 vs. TrEMBL
Match: A0A0A0KGW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509590 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.1e-14
Identity = 67/157 (42.68%), Postives = 83/157 (52.87%), Query Frame = 1


Query: 87  GKKRGRG----GGEEEEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFG 146
           G+KRGRG    GG      Q         KKKGEL + P  +P+CATC K+F SWKA+FG
Sbjct: 61  GRKRGRGEDHGGGSSSGSGQK-------GKKKGELIDPPSTDPKCATCGKIFGSWKAVFG 120

Query: 147 HLRSHPERTYRGALPPPTAAE--LDIRRCQQQLASTLLTVAQEVAA--------SRRGLD 206
           HLRSHPER YRGA PPP   E  L     ++Q      +    V          S RG+ 
Sbjct: 121 HLRSHPERDYRGAFPPPKIWEEMLQQETLRRQHGQGEGSSGGNVEGRARLSSLPSGRGIG 180

Query: 207 IDLNQPSTADDGDSPEKTGGVGFDLNADPPPGSDDED 230
           IDLN P  A +G+  E      FDLN +P P +++ED
Sbjct: 181 IDLNDPE-AQEGNKDE----FPFDLN-EPAPENEEED 204

[Close]

BLAST of Cp4.1LG08g12740 vs. TrEMBL
Match: A0A067LGT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22382 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 80/210 (38.10%), Postives = 99/210 (47.14%), Query Frame = 1


Query: 41  PNPTTEHSSYSDRLPVPPAAETSRRDGLFDVGTSYENIVGSSEGEPGKKRGRG---GGEE 100
           P+ ++  SS S   P PP    S    +  VG       G   G  G+   R    G   
Sbjct: 12  PSSSSSSSSSSSTPPPPPPPPPS----ILTVGHGGSTSRGGGNGASGEGSSRKRSYGVSV 71

Query: 101 EEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALP 160
                    QVK  +KKGEL + PK +P C+ C+K F SWK +FGHLR+HPER +RGA P
Sbjct: 72  SSSISGGEGQVK--RKKGELIDPPKSDPICSLCDKRFGSWKGVFGHLRAHPERDWRGAFP 131

Query: 161 PPTAAE-----LDIRRCQQQ------LASTLLTVAQEVAASRRGLDIDLNQPSTADDGDS 220
           PP  AE     + I    QQ      LA TLL +A +  A  R  DIDLN+      G S
Sbjct: 132 PPKRAEASWSPIRIGNAGQQVFQGHLLAPTLLNLAHQTLAKMRH-DIDLNREPQDAAGPS 191

Query: 221 ----PEKTGG---VGFDLNADPPPGSDDED 230
               P   GG     FDLN  PPP + DE+
Sbjct: 192 APPPPPPQGGNRRCSFDLNLPPPPENGDEN 214

[Close]

BLAST of Cp4.1LG08g12740 vs. TrEMBL
Match: W9SMY3_9ROSA (Zinc finger protein ZAT3 OS=Morus notabilis GN=L484_023163 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.4e-14
Identity = 56/138 (40.58%), Postives = 72/138 (52.17%), Query Frame = 1


Query: 93  GGGEEEEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTY 152
           GG + E   + PP   +  K+K E++      P C+ C+KVF SWKALFGH+RSHPER +
Sbjct: 86  GGIQVESTSEVPPSGSRPLKRKSEVSAPEGVVPTCSVCSKVFASWKALFGHMRSHPERQW 145

Query: 153 RGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKT-- 212
           RG  PPP A +   R    Q A             R  LDIDLN+P   + G   ++T  
Sbjct: 146 RGCFPPPVAQQQLSRAGDHQAA--FAESGGGNTQRREELDIDLNRPQEGNFGAPTDQTKN 205

Query: 213 GGVGFDLNADPPPGSDDE 229
              GFDLN  P P  DD+
Sbjct: 206 DDGGFDLNMPPMPDDDDD 221

[Close]

BLAST of Cp4.1LG08g12740 vs. TrEMBL
Match: B9S6T8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0873820 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.7e-13
Identity = 69/200 (34.50%), Postives = 98/200 (49.00%), Query Frame = 1


Query: 58  PAAETSRRDGLFDVGTSYENIVGSS-------EGEPGKKRGR-GGGEEEEEQQPPPQQVK 117
           P++ +S   G        E ++GSS       EG P KK+     G+++ E  P    V+
Sbjct: 75  PSSSSSSSPGNTPPRRIVEIVLGSSHGGGKSGEGSPKKKKALPSSGKKDGESNPG---VE 134

Query: 118 AAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP---------- 177
             +KK E+ + PK +P C+ C K F SWK +FGHLR+HPER +RGA PPP          
Sbjct: 135 KKRKKAEM-DAPKSDPICSLCGKRFGSWKGVFGHLRAHPERDWRGAFPPPKGEAASWSPI 194

Query: 178 -TAAELDIRRCQ-QQLASTLLTVAQEVAASRR-------GLDIDLNQPSTADDGDSPEKT 229
            T    D +  Q + LA TLL +A+E  +  R        +D++    S++     P   
Sbjct: 195 KTGGPDDNQAMQVELLAPTLLGLARETLSKMRQESTRVGNIDLNKEPESSSSPSPPPPPQ 254

[Close]

BLAST of Cp4.1LG08g12740 vs. TAIR10
Match: AT4G35700.1 (AT4G35700.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 59/152 (38.82%), Postives = 73/152 (48.03%), Query Frame = 1


Query: 108 VKAAKKKG--ELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT--AAE 167
           VK  +KKG  +LT +P+G P C  C K F SWKA+FGHLR H +R Y G LPPPT  AAE
Sbjct: 123 VKKPRKKGSTQLTHLPQGPPMCNVCGKGFASWKAVFGHLRQHKDRGYLGFLPPPTFNAAE 182

Query: 168 LDI----RRCQQQLASTLLTVAQEVAASRRG------------------LDIDLNQPSTA 227
                          +T ++V +   AS  G                    IDLN    A
Sbjct: 183 EGFGGVATASTGGAVATAISVGEVPTASSAGGLATASSDGEGLVSSIGRARIDLN----A 242

Query: 228 DDGDSPEKTGGVG----FDLNADPPPGSDDED 230
           D  +  +K  GVG    FDLN  PPP  D+E+
Sbjct: 243 DPVEEEDKVIGVGSKRKFDLNRSPPPDGDEEN 270

[Close]

BLAST of Cp4.1LG08g12740 vs. TAIR10
Match: AT4G35610.1 (AT4G35610.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-11
Identity = 56/149 (37.58%), Postives = 74/149 (49.66%), Query Frame = 1


Query: 80  GSSEGEPGKKRGRGGGEEEEEQQPPPQ-QVKAAKKKG-ELTEVPKGEPRCATCNKVFKSW 139
           GS  G   K R R   + ++E     + + K  KKK  ELT  PKG P C  C + F SW
Sbjct: 91  GSGSGGKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAKELTHPPKGPPVCHICGRGFGSW 150

Query: 140 KALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDI---D 199
           KA+FGH+R+H +R Y+G LPPPT +    R     L S   T+A     S  G+ +    
Sbjct: 151 KAVFGHMRAHRDRNYQGFLPPPTFSAGAERFVIPGLRSA-FTIATVGGGSSGGVAVGGRS 210

Query: 200 LNQPSTADDGDSPEKTG--GVGFDLNADP 222
               S +  GD+P   G  G G DLN +P
Sbjct: 211 SGDFSGSGGGDAPGSEGGRGSGIDLNVEP 238

[Close]

BLAST of Cp4.1LG08g12740 vs. TAIR10
Match: AT4G35280.1 (AT4G35280.1 C2H2-like zinc finger protein)

HSP 1 Score: 54.7 bits (130), Expect = 8.8e-08
Identity = 40/115 (34.78%), Postives = 54/115 (46.96%), Query Frame = 1


Query: 49  SYSDR---LPVPPAAETSRRDGL-FDVGTSYENIVGSSEGEPGKKRGRGGGEEEEEQQPP 108
           SY DR   +P+ P+  ++    L F + +SY++        P KKR +            
Sbjct: 6   SYDDRSFHIPLHPSNTSNPNPNLQFALSSSYDH-------SPKKKRTKTVASSSSSSPKS 65

Query: 109 PQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP 160
             + K  KK       PK    C  C + F SWKALFGH+R HPER +RG  PPP
Sbjct: 66  ASKPKYTKKPDP--NAPKITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPP 111

[Close]

BLAST of Cp4.1LG08g12740 vs. TAIR10
Match: AT2G26940.1 (AT2G26940.1 C2H2-type zinc finger family protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 19/45 (42.22%), Postives = 32/45 (71.11%), Query Frame = 1


Query: 122 KGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDI 167
           +G+ RC  C K F++  +LFGH+R HP+RT++G  PPP + + ++
Sbjct: 116 EGKIRCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPPPPSEKFNL 160

[Close]

BLAST of Cp4.1LG08g12740 vs. TAIR10
Match: AT5G56200.1 (AT5G56200.1 C2H2 type zinc finger transcription factor family)

HSP 1 Score: 49.7 bits (117), Expect = 2.8e-06
Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 1


Query: 124 EPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQE 183
           E  C  C K F S KAL+GH+R HP+R ++G LPPP      +       +S+ L    E
Sbjct: 129 EVACCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLLPHPLGNS----SSSTLDHDDE 188

Query: 184 VAASRRGLDIDLNQPSTADDGDSPE 209
             +S    D D +     DD ++ E
Sbjct: 189 FISSDYDDDDDFDDDDDDDDDENSE 209

[Close]

BLAST of Cp4.1LG08g12740 vs. NCBI nr
Match: gi|659096552|ref|XP_008449156.1| (PREDICTED: uncharacterized protein LOC103491103 [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.8e-72
Identity = 166/247 (67.21%), Postives = 181/247 (73.28%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQRHGGERSPTGPTSPQPTHNRD--NNPNPTTEHS 60
           MEKN NTN             ETS DQRHGGERSP   +   P  N D  NNP       
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHGGERSPMAASPLPPARNIDDINNPPTVVIEP 60

Query: 61  SYSDRLPVPPAA---ETSRR---DGLFDVGTS-YENIVGSSEGEPGKKRGRGGGEEEEEQ 120
           S S  +  P +A   +  RR   D +FDVGTS +E++ GSS+ E GKKRGRG G E++  
Sbjct: 61  SSSTLVAAPESATPGDVRRRQSVDAMFDVGTSSHEHVGGSSDAEAGKKRGRGDGGEQQ-- 120

Query: 121 QPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180
               QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA
Sbjct: 121 ----QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180

Query: 181 AELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADP 229
           AELDIRRCQQQLASTLLTVAQ+VAA+RRGLDIDLNQPSTADDGDSP+ T   GFDLN +P
Sbjct: 181 AELDIRRCQQQLASTLLTVAQQVAATRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLEP 240

[Close]

BLAST of Cp4.1LG08g12740 vs. NCBI nr
Match: gi|778688264|ref|XP_011652703.1| (PREDICTED: uncharacterized protein LOC105435052 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 2.9e-69
Identity = 160/247 (64.78%), Postives = 176/247 (71.26%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQRHGGERSPTGPTSPQPTHNRDNNPNPTTEHSSY 60
           MEKN NTN             ETS DQRH  ERSP   + P P    D+  NP T+    
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHRRERSPMAASPPPPARIIDDINNPPTDVIEP 60

Query: 61  SDRLPVPPAAETSRRD--------GLFDVGTS-YENIVGSSEGEPGKKRGRGGGEEEEEQ 120
           S  + V      +  D         +FDVGTS +E++ GSS+ E GKKRGRG G E++  
Sbjct: 61  SSSIVVAAPESVTPGDVRRRQSVNAMFDVGTSSHEHVGGSSDVEAGKKRGRGDGGEQQ-- 120

Query: 121 QPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180
               QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA
Sbjct: 121 ----QQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180

Query: 181 AELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKTGGVGFDLNADP 229
           AELDIRRCQQQLASTLLTVAQ+V+ASRRGLDIDLNQPSTADDGDSP+ T   GFDLN +P
Sbjct: 181 AELDIRRCQQQLASTLLTVAQQVSASRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLEP 240

[Close]

BLAST of Cp4.1LG08g12740 vs. NCBI nr
Match: gi|778722509|ref|XP_011658503.1| (PREDICTED: zinc finger protein ZAT4-like [Cucumis sativus])

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 67/157 (42.68%), Postives = 83/157 (52.87%), Query Frame = 1


Query: 87  GKKRGRG----GGEEEEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFG 146
           G+KRGRG    GG      Q         KKKGEL + P  +P+CATC K+F SWKA+FG
Sbjct: 61  GRKRGRGEDHGGGSSSGSGQK-------GKKKGELIDPPSTDPKCATCGKIFGSWKAVFG 120

Query: 147 HLRSHPERTYRGALPPPTAAE--LDIRRCQQQLASTLLTVAQEVAA--------SRRGLD 206
           HLRSHPER YRGA PPP   E  L     ++Q      +    V          S RG+ 
Sbjct: 121 HLRSHPERDYRGAFPPPKIWEEMLQQETLRRQHGQGEGSSGGNVEGRARLSSLPSGRGIG 180

Query: 207 IDLNQPSTADDGDSPEKTGGVGFDLNADPPPGSDDED 230
           IDLN P  A +G+  E      FDLN +P P +++ED
Sbjct: 181 IDLNDPE-AQEGNKDE----FPFDLN-EPAPENEEED 204

[Close]

BLAST of Cp4.1LG08g12740 vs. NCBI nr
Match: gi|643737706|gb|KDP43755.1| (hypothetical protein JCGZ_22382 [Jatropha curcas])

HSP 1 Score: 88.2 bits (217), Expect = 2.0e-14
Identity = 80/210 (38.10%), Postives = 99/210 (47.14%), Query Frame = 1


Query: 41  PNPTTEHSSYSDRLPVPPAAETSRRDGLFDVGTSYENIVGSSEGEPGKKRGRG---GGEE 100
           P+ ++  SS S   P PP    S    +  VG       G   G  G+   R    G   
Sbjct: 12  PSSSSSSSSSSSTPPPPPPPPPS----ILTVGHGGSTSRGGGNGASGEGSSRKRSYGVSV 71

Query: 101 EEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALP 160
                    QVK  +KKGEL + PK +P C+ C+K F SWK +FGHLR+HPER +RGA P
Sbjct: 72  SSSISGGEGQVK--RKKGELIDPPKSDPICSLCDKRFGSWKGVFGHLRAHPERDWRGAFP 131

Query: 161 PPTAAE-----LDIRRCQQQ------LASTLLTVAQEVAASRRGLDIDLNQPSTADDGDS 220
           PP  AE     + I    QQ      LA TLL +A +  A  R  DIDLN+      G S
Sbjct: 132 PPKRAEASWSPIRIGNAGQQVFQGHLLAPTLLNLAHQTLAKMRH-DIDLNREPQDAAGPS 191

Query: 221 ----PEKTGG---VGFDLNADPPPGSDDED 230
               P   GG     FDLN  PPP + DE+
Sbjct: 192 APPPPPPQGGNRRCSFDLNLPPPPENGDEN 214

[Close]

BLAST of Cp4.1LG08g12740 vs. NCBI nr
Match: gi|703143677|ref|XP_010108077.1| (Zinc finger protein ZAT3 [Morus notabilis])

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 56/138 (40.58%), Postives = 72/138 (52.17%), Query Frame = 1


Query: 93  GGGEEEEEQQPPPQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTY 152
           GG + E   + PP   +  K+K E++      P C+ C+KVF SWKALFGH+RSHPER +
Sbjct: 86  GGIQVESTSEVPPSGSRPLKRKSEVSAPEGVVPTCSVCSKVFASWKALFGHMRSHPERQW 145

Query: 153 RGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDSPEKT-- 212
           RG  PPP A +   R    Q A             R  LDIDLN+P   + G   ++T  
Sbjct: 146 RGCFPPPVAQQQLSRAGDHQAA--FAESGGGNTQRREELDIDLNRPQEGNFGAPTDQTKN 205

Query: 213 GGVGFDLNADPPPGSDDE 229
              GFDLN  P P  DD+
Sbjct: 206 DDGGFDLNMPPMPDDDDD 221

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12740 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZAT3_ARATH	1.6e-06	34.78	Zinc finger protein ZAT3 OS=Arabidopsis thaliana GN=ZAT3 PE=1 SV=1	[more]

BLAST of Cp4.1LG08g12740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0X7_CUCSA	2.0e-69	64.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G001720 PE=4 SV=1	[more]
A0A0A0KGW4_CUCSA	1.1e-14	42.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509590 PE=4 SV=1	[more]
A0A067LGT5_JATCU	1.4e-14	38.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22382 PE=4 SV=1	[more]
W9SMY3_9ROSA	2.4e-14	40.58	Zinc finger protein ZAT3 OS=Morus notabilis GN=L484_023163 PE=4 SV=1	[more]
B9S6T8_RICCO	2.7e-13	34.50	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0873820 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g12740 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35700.1	3.7e-14	38.82	zinc finger (C2H2 type) family protein	[more]
AT4G35610.1	2.2e-11	37.58	zinc finger (C2H2 type) family protein	[more]
AT4G35280.1	8.8e-08	34.78	C2H2-like zinc finger protein	[more]
AT2G26940.1	2.0e-07	42.22	C2H2-type zinc finger family protein	[more]
AT5G56200.1	2.8e-06	34.12	C2H2 type zinc finger transcription factor family	[more]

BLAST of Cp4.1LG08g12740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096552\|ref\|XP_008449156.1\|	2.8e-72	67.21	PREDICTED: uncharacterized protein LOC103491103 [Cucumis melo]	[more]
gi\|778688264\|ref\|XP_011652703.1\|	2.9e-69	64.78	PREDICTED: uncharacterized protein LOC105435052 [Cucumis sativus]	[more]
gi\|778722509\|ref\|XP_011658503.1\|	1.6e-14	42.68	PREDICTED: zinc finger protein ZAT4-like [Cucumis sativus]	[more]
gi\|643737706\|gb\|KDP43755.1\|	2.0e-14	38.10	hypothetical protein JCGZ_22382 [Jatropha curcas]	[more]
gi\|703143677\|ref\|XP_010108077.1\|	3.5e-14	40.58	Zinc finger protein ZAT3 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g12740.1	Cp4.1LG08g12740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 126..149 score: 7.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 127..147 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 125..147 score: 8
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 112..160 score: 1.3
None	No IPR available	PANTHER	PTHR26374:SF186	SUBFAMILY NOT NAMED	coord: 112..160 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g12740	Cucsa.323160	Cucumber (Gy14) v1	cgycpeB0858
Cp4.1LG08g12740	CmaCh16G012810	Cucurbita maxima (Rimu)	cmacpeB366
Cp4.1LG08g12740	CmaCh06G001600	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g12740	CmoCh06G001510	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g12740	CmoCh16G013340	Cucurbita moschata (Rifu)	cmocpeB330
Cp4.1LG08g12740	Cla008950	Watermelon (97103) v1	cpewmB833
Cp4.1LG08g12740	Csa3G001720	Cucumber (Chinese Long) v2	cpecuB851
Cp4.1LG08g12740	MELO3C013717	Melon (DHL92) v3.5.1	cpemeB816
Cp4.1LG08g12740	ClCG10G000200	Watermelon (Charleston Gray)	cpewcgB768
Cp4.1LG08g12740	CSPI03G00230	Wild cucumber (PI 183967)	cpecpiB853
Cp4.1LG08g12740	Lsi07G010480	Bottle gourd (USVL1VR-Ls)	cpelsiB722
Cp4.1LG08g12740	MELO3C013717.2	Melon (DHL92) v3.6.1	cpemedB949
Cp4.1LG08g12740	CsaV3_3G000220	Cucumber (Chinese Long) v3	cpecucB1048
Cp4.1LG08g12740	CsGy3G000190	Cucumber (Gy14) v2	cgybcpeB446
Cp4.1LG08g12740	Carg01175	Silver-seed gourd	carcpeB0233
Cp4.1LG08g12740	Carg00541	Silver-seed gourd	carcpeB0575
Cp4.1LG08g12740	Carg19433	Silver-seed gourd	carcpeB0603

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG08g12740	Cp4.1LG14g10640	Cucurbita pepo (Zucchini)	cpecpeB252

The following block(s) are covering this gene:

None