CmaCh06G001600 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G001600
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Zinc finger family protein
Location	Cma_Chr06 : 801423 .. 802112 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAATGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACCACCGGACACTCATCCTACTCCGACACGCTACTGGTACCTCCCGCCGCCGACACTAGCCGGCGGGATGCCCTTCTCGACATCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGATGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGGAGCAGCAGCCGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAGCCCTCCACTGCTGACGACGGTGACTGGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

mRNA sequence

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAATGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACCACCGGACACTCATCCTACTCCGACACGCTACTGGTACCTCCCGCCGCCGACACTAGCCGGCGGGATGCCCTTCTCGACATCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGATGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGGAGCAGCAGCCGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAGCCCTCCACTGCTGACGACGGTGACTGGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

Coding sequence (CDS)

ATGGAGAAGAATGCCAATACCAATGTCCCACCGGAGACCTCTTCCGACCAATGCCACGGCGGAGAAAGGTCTCCGACGGGGCCGACTTCTCCTCCACCAACTCACAACCGCGATAATAACCCTAACCCCACCACCGGACACTCATCCTACTCCGACACGCTACTGGTACCTCCCGCCGCCGACACTAGCCGGCGGGATGCCCTTCTCGACATCGGAACGTCGTACGAGAACGTCGTAGGAAGTTCCGATGGCGAGCCAGGGAAAAAGAGAGGACGAGGTGACGGAGAAGAGGAGGAGGAGGAGCAGCAGCCGCAGCAGCAGGTGAAAGCTGCAAAGAAGAAAGGGGAGCTGACGGAGGTTCCAAAAGGGGAGCCTAGATGTGCGACTTGCAACAAAGTGTTCAAATCGTGGAAAGCACTTTTTGGGCACTTGAGGTCTCACCCGGAACGGACCTACCGTGGGGCTCTTCCGCCACCAACCGCCGCAGAGCTCGACATTCGCCGCTGTCAGCAACAGCTCGCTTCCACTTTGCTGACTGTGGCTCAGGAAGTGGCGGCGTCGCGAAGAGGGCTGGATATTGATCTCAACCAGCCCTCCACTGCTGACGACGGTGACTGGCCGGAGAAGACCGGCGGCGTGGGGTTCGATCTGAACGCCGATCCGCCGCCGGGAAGTGATGACGAGGACTGA

Protein sequence

MEKNANTNVPPETSSDQCHGGERSPTGPTSPPPTHNRDNNPNPTTGHSSYSDTLLVPPAADTSRRDALLDIGTSYENVVGSSDGEPGKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNADPPPGSDDED

Homology

[Close]

BLAST of CmaCh06G001600 vs. TrEMBL
Match: A0A0A0L0X7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G001720 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 164/247 (66.40%), Postives = 179/247 (72.47%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQCHGGERSPTGPTSPPPTHNRDNNPNPTTGHSSY 60
           MEKN NTN             ETS DQ H  ERSP   + PPP    D+  NP T     
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHRRERSPMAASPPPPARIIDDINNPPTDVIEP 60

Query: 61  SDTLLVPPA-----ADTSRR---DALLDIGTS-YENVVGSSDGEPGKKRGRGDGEEEEEE 120
           S +++V         D  RR   +A+ D+GTS +E+V GSSD E GKKRGRGDG E+   
Sbjct: 61  SSSIVVAAPESVTPGDVRRRQSVNAMFDVGTSSHEHVGGSSDVEAGKKRGRGDGGEQ--- 120

Query: 121 QQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180
              QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA
Sbjct: 121 ---QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180

Query: 181 AELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNADP 229
           AELDIRRCQQQLASTLLTVAQ+V+ASRRGLDIDLNQPSTADDGD P+ T   GFDLN +P
Sbjct: 181 AELDIRRCQQQLASTLLTVAQQVSASRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLEP 240

[Close]

BLAST of CmaCh06G001600 vs. TrEMBL
Match: A0A0A0KGW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509590 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 65/153 (42.48%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 87  GKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRS 146
           G+KRGRG+           Q+    KKKGEL + P  +P+CATC K+F SWKA+FGHLRS
Sbjct: 61  GRKRGRGEDHGGGSSSGSGQK---GKKKGELIDPPSTDPKCATCGKIFGSWKAVFGHLRS 120

Query: 147 HPERTYRGALPPPTAAE--LDIRRCQQQLASTLLTVAQEVAA--------SRRGLDIDLN 206
           HPER YRGA PPP   E  L     ++Q      +    V          S RG+ IDLN
Sbjct: 121 HPERDYRGAFPPPKIWEEMLQQETLRRQHGQGEGSSGGNVEGRARLSSLPSGRGIGIDLN 180

Query: 207 QPSTADDGDWPEKTGGVGFDLNADPPPGSDDED 230
            P  A +G+  E      FDLN +P P +++ED
Sbjct: 181 DPE-AQEGNKDE----FPFDLN-EPAPENEEED 204

[Close]

BLAST of CmaCh06G001600 vs. TrEMBL
Match: A0A067LGT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22382 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 80/210 (38.10%), Postives = 102/210 (48.57%), Query Frame = 1


Query: 41  PNPTTGHSSYSDTLLVPPAADTSRRDALLDIGTSYENVVGSSDGEPGK--KRGRGDGEEE 100
           P+ ++  SS S T   PP    S    +L +G       G  +G  G+   R R  G   
Sbjct: 12  PSSSSSSSSSSSTPPPPPPPPPS----ILTVGHGGSTSRGGGNGASGEGSSRKRSYGVSV 71

Query: 101 EEE-QQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALP 160
                  + QVK  +KKGEL + PK +P C+ C+K F SWK +FGHLR+HPER +RGA P
Sbjct: 72  SSSISGGEGQVK--RKKGELIDPPKSDPICSLCDKRFGSWKGVFGHLRAHPERDWRGAFP 131

Query: 161 PPTAAE-----LDIRRCQQQ------LASTLLTVAQEVAASRRGLDIDLNQPSTADDGDW 220
           PP  AE     + I    QQ      LA TLL +A +  A  R  DIDLN+      G  
Sbjct: 132 PPKRAEASWSPIRIGNAGQQVFQGHLLAPTLLNLAHQTLAKMRH-DIDLNREPQDAAGPS 191

Query: 221 ----PEKTGG---VGFDLNADPPPGSDDED 230
               P   GG     FDLN  PPP + DE+
Sbjct: 192 APPPPPPQGGNRRCSFDLNLPPPPENGDEN 214

[Close]

BLAST of CmaCh06G001600 vs. TrEMBL
Match: B9S6T8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0873820 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 74/223 (33.18%), Postives = 105/223 (47.09%), Query Frame = 1


Query: 27  GPTSPPPTHNRDNNPNPTTGHSSYSDTLLVPPAADTSRRDALLDIGTSYENVVGSSDGEP 86
           G +S PP            G SS S +    P     RR   + +G+S+     S +G P
Sbjct: 58  GSSSAPPLQQL------VEGISSPSSSSSSSPGNTPPRRIVEIVLGSSHGGGK-SGEGSP 117

Query: 87  GKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRS 146
            KK+      +++ E  P  + K  +KK E+ + PK +P C+ C K F SWK +FGHLR+
Sbjct: 118 KKKKALPSSGKKDGESNPGVEKK--RKKAEM-DAPKSDPICSLCGKRFGSWKGVFGHLRA 177

Query: 147 HPERTYRGALPPP-----------TAAELDIRRCQ-QQLASTLLTVAQEVAASRR----- 206
           HPER +RGA PPP           T    D +  Q + LA TLL +A+E  +  R     
Sbjct: 178 HPERDWRGAFPPPKGEAASWSPIKTGGPDDNQAMQVELLAPTLLGLARETLSKMRQESTR 237

Query: 207 --GLDIDLNQPSTADDGDWPEKTGG--VGFDLNADPPPGSDDE 229
              +D++    S++     P   GG   G DLN  PPP SD +
Sbjct: 238 VGNIDLNKEPESSSSPSPPPPPQGGASAGLDLNKSPPPESDQD 270

[Close]

BLAST of CmaCh06G001600 vs. TrEMBL
Match: A0A0D2QT35_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G198600 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.6e-12
Identity = 60/162 (37.04%), Postives = 77/162 (47.53%), Query Frame = 1


Query: 111 AKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAEL------ 170
           A+KK E+ E+P+GEP C  C+K F SWKA+FGHL+SH +R   GALPPPT          
Sbjct: 44  ARKKREM-EIPRGEPTCYVCSKNFTSWKAVFGHLKSH-QRETPGALPPPTFTPTEGSPEN 103

Query: 171 ---DIRRCQQQLASTLLTVA-------------------QEVAASRRG------------ 230
              D    ++QLA TLL +A                   +E ++S +G            
Sbjct: 104 NNDDETNPREQLAPTLLNLALETMQKMSEDSNMSVVVAGEEASSSGKGRGRGKGRGRGRG 163

[Close]

BLAST of CmaCh06G001600 vs. TAIR10
Match: AT4G35700.1 (AT4G35700.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.7e-14
Identity = 59/152 (38.82%), Postives = 73/152 (48.03%), Query Frame = 1


Query: 108 VKAAKKKG--ELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT--AAE 167
           VK  +KKG  +LT +P+G P C  C K F SWKA+FGHLR H +R Y G LPPPT  AAE
Sbjct: 123 VKKPRKKGSTQLTHLPQGPPMCNVCGKGFASWKAVFGHLRQHKDRGYLGFLPPPTFNAAE 182

Query: 168 LDI----RRCQQQLASTLLTVAQEVAASRRG------------------LDIDLNQPSTA 227
                          +T ++V +   AS  G                    IDLN    A
Sbjct: 183 EGFGGVATASTGGAVATAISVGEVPTASSAGGLATASSDGEGLVSSIGRARIDLN----A 242

Query: 228 DDGDWPEKTGGVG----FDLNADPPPGSDDED 230
           D  +  +K  GVG    FDLN  PPP  D+E+
Sbjct: 243 DPVEEEDKVIGVGSKRKFDLNRSPPPDGDEEN 270

[Close]

BLAST of CmaCh06G001600 vs. TAIR10
Match: AT4G35610.1 (AT4G35610.1 zinc finger (C2H2 type) family protein)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 57/158 (36.08%), Postives = 76/158 (48.10%), Query Frame = 1


Query: 79  VGSSDGEPGKKRGR----------GDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCA 138
           +    G  GKK+ R          GDG  E E ++P+++ K      ELT  PKG P C 
Sbjct: 88  MNEGSGSGGKKKSRPRISTQTDDEGDGLGEGEAKKPKKKAK------ELTHPPKGPPVCH 147

Query: 139 TCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDIRRCQQQLASTLLTVAQEVAASR 198
            C + F SWKA+FGH+R+H +R Y+G LPPPT +    R     L S   T+A     S 
Sbjct: 148 ICGRGFGSWKAVFGHMRAHRDRNYQGFLPPPTFSAGAERFVIPGLRSA-FTIATVGGGSS 207

Query: 199 RGLDI---DLNQPSTADDGDWPEKTG--GVGFDLNADP 222
            G+ +        S +  GD P   G  G G DLN +P
Sbjct: 208 GGVAVGGRSSGDFSGSGGGDAPGSEGGRGSGIDLNVEP 238

[Close]

BLAST of CmaCh06G001600 vs. TAIR10
Match: AT2G26940.1 (AT2G26940.1 C2H2-type zinc finger family protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.0e-07
Identity = 19/45 (42.22%), Postives = 32/45 (71.11%), Query Frame = 1


Query: 122 KGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTAAELDI 167
           +G+ RC  C K F++  +LFGH+R HP+RT++G  PPP + + ++
Sbjct: 116 EGKIRCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPPPPSEKFNL 160

[Close]

BLAST of CmaCh06G001600 vs. TAIR10
Match: AT5G56200.1 (AT5G56200.1 C2H2 type zinc finger transcription factor family)

HSP 1 Score: 51.2 bits (121), Expect = 9.7e-07
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 1


Query: 124 EPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPP 160
           E  C  C K F S KAL+GH+R HP+R ++G LPPP
Sbjct: 129 EVACCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPP 164

[Close]

BLAST of CmaCh06G001600 vs. TAIR10
Match: AT4G35280.1 (AT4G35280.1 C2H2-like zinc finger protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.7e-06
Identity = 32/79 (40.51%), Postives = 38/79 (48.10%), Query Frame = 1


Query: 81  SSDGEPGKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKAL 140
           S D  P KKR +          +   + K  KK       PK    C  C + F SWKAL
Sbjct: 35  SYDHSPKKKRTKTVASSSSSSPKSASKPKYTKKPDP--NAPKITRPCTECGRKFWSWKAL 94

Query: 141 FGHLRSHPERTYRGALPPP 160
           FGH+R HPER +RG  PPP
Sbjct: 95  FGHMRCHPERQWRGINPPP 111

[Close]

BLAST of CmaCh06G001600 vs. NCBI nr
Match: gi|659096552|ref|XP_008449156.1| (PREDICTED: uncharacterized protein LOC103491103 [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 1.7e-74
Identity = 171/248 (68.95%), Postives = 183/248 (73.79%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQCHGGERSPTGPTSPPPTHNRD--NNPNPTTGHS 60
           MEKN NTN             ETS DQ HGGERSP   +  PP  N D  NNP PT    
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHGGERSPMAASPLPPARNIDDINNP-PTVVIE 60

Query: 61  SYSDTLLVPPAA----DTSRR---DALLDIGTS-YENVVGSSDGEPGKKRGRGDGEEEEE 120
             S TL+  P +    D  RR   DA+ D+GTS +E+V GSSD E GKKRGRGDG E+  
Sbjct: 61  PSSSTLVAAPESATPGDVRRRQSVDAMFDVGTSSHEHVGGSSDAEAGKKRGRGDGGEQ-- 120

Query: 121 EQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT 180
               QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT
Sbjct: 121 ----QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPT 180

Query: 181 AAELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNAD 229
           AAELDIRRCQQQLASTLLTVAQ+VAA+RRGLDIDLNQPSTADDGD P+ T   GFDLN +
Sbjct: 181 AAELDIRRCQQQLASTLLTVAQQVAATRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLE 240

[Close]

BLAST of CmaCh06G001600 vs. NCBI nr
Match: gi|778688264|ref|XP_011652703.1| (PREDICTED: uncharacterized protein LOC105435052 [Cucumis sativus])

HSP 1 Score: 276.6 bits (706), Expect = 4.0e-71
Identity = 164/247 (66.40%), Postives = 179/247 (72.47%), Query Frame = 1


Query: 1   MEKNANTNVPP----------ETSSDQCHGGERSPTGPTSPPPTHNRDNNPNPTTGHSSY 60
           MEKN NTN             ETS DQ H  ERSP   + PPP    D+  NP T     
Sbjct: 1   MEKNTNTNANTNININIDAVSETSPDQRHRRERSPMAASPPPPARIIDDINNPPTDVIEP 60

Query: 61  SDTLLVPPA-----ADTSRR---DALLDIGTS-YENVVGSSDGEPGKKRGRGDGEEEEEE 120
           S +++V         D  RR   +A+ D+GTS +E+V GSSD E GKKRGRGDG E+   
Sbjct: 61  SSSIVVAAPESVTPGDVRRRQSVNAMFDVGTSSHEHVGGSSDVEAGKKRGRGDGGEQ--- 120

Query: 121 QQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180
              QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA
Sbjct: 121 ---QQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALPPPTA 180

Query: 181 AELDIRRCQQQLASTLLTVAQEVAASRRGLDIDLNQPSTADDGDWPEKTGGVGFDLNADP 229
           AELDIRRCQQQLASTLLTVAQ+V+ASRRGLDIDLNQPSTADDGD P+ T   GFDLN +P
Sbjct: 181 AELDIRRCQQQLASTLLTVAQQVSASRRGLDIDLNQPSTADDGDSPDNTRDAGFDLNLEP 240

[Close]

BLAST of CmaCh06G001600 vs. NCBI nr
Match: gi|778722509|ref|XP_011658503.1| (PREDICTED: zinc finger protein ZAT4-like [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 2.7e-14
Identity = 65/153 (42.48%), Postives = 83/153 (54.25%), Query Frame = 1


Query: 87  GKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRS 146
           G+KRGRG+           Q+    KKKGEL + P  +P+CATC K+F SWKA+FGHLRS
Sbjct: 61  GRKRGRGEDHGGGSSSGSGQK---GKKKGELIDPPSTDPKCATCGKIFGSWKAVFGHLRS 120

Query: 147 HPERTYRGALPPPTAAE--LDIRRCQQQLASTLLTVAQEVAA--------SRRGLDIDLN 206
           HPER YRGA PPP   E  L     ++Q      +    V          S RG+ IDLN
Sbjct: 121 HPERDYRGAFPPPKIWEEMLQQETLRRQHGQGEGSSGGNVEGRARLSSLPSGRGIGIDLN 180

Query: 207 QPSTADDGDWPEKTGGVGFDLNADPPPGSDDED 230
            P  A +G+  E      FDLN +P P +++ED
Sbjct: 181 DPE-AQEGNKDE----FPFDLN-EPAPENEEED 204

[Close]

BLAST of CmaCh06G001600 vs. NCBI nr
Match: gi|643737706|gb|KDP43755.1| (hypothetical protein JCGZ_22382 [Jatropha curcas])

HSP 1 Score: 86.3 bits (212), Expect = 7.7e-14
Identity = 80/210 (38.10%), Postives = 102/210 (48.57%), Query Frame = 1


Query: 41  PNPTTGHSSYSDTLLVPPAADTSRRDALLDIGTSYENVVGSSDGEPGK--KRGRGDGEEE 100
           P+ ++  SS S T   PP    S    +L +G       G  +G  G+   R R  G   
Sbjct: 12  PSSSSSSSSSSSTPPPPPPPPPS----ILTVGHGGSTSRGGGNGASGEGSSRKRSYGVSV 71

Query: 101 EEE-QQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRSHPERTYRGALP 160
                  + QVK  +KKGEL + PK +P C+ C+K F SWK +FGHLR+HPER +RGA P
Sbjct: 72  SSSISGGEGQVK--RKKGELIDPPKSDPICSLCDKRFGSWKGVFGHLRAHPERDWRGAFP 131

Query: 161 PPTAAE-----LDIRRCQQQ------LASTLLTVAQEVAASRRGLDIDLNQPSTADDGDW 220
           PP  AE     + I    QQ      LA TLL +A +  A  R  DIDLN+      G  
Sbjct: 132 PPKRAEASWSPIRIGNAGQQVFQGHLLAPTLLNLAHQTLAKMRH-DIDLNREPQDAAGPS 191

Query: 221 ----PEKTGG---VGFDLNADPPPGSDDED 230
               P   GG     FDLN  PPP + DE+
Sbjct: 192 APPPPPPQGGNRRCSFDLNLPPPPENGDEN 214

[Close]

BLAST of CmaCh06G001600 vs. NCBI nr
Match: gi|659081072|ref|XP_008441135.1| (PREDICTED: zinc finger protein ZAT4 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 6.5e-13
Identity = 63/155 (40.65%), Postives = 81/155 (52.26%), Query Frame = 1


Query: 87  GKKRGRGDGEEEEEEQQPQQQVKAAKKKGELTEVPKGEPRCATCNKVFKSWKALFGHLRS 146
           G+KRGR +           Q+    KKKGEL + P   P+CATC K F SWKA+FGHLRS
Sbjct: 61  GRKRGRAEDHGGGSSSGSGQK---GKKKGELIDPPSTAPKCATCGKTFGSWKAVFGHLRS 120

Query: 147 HPERTYRGALPPPTAAE--LDIRRCQQQLASTLLTVAQEVAA--------SRRGLDIDLN 206
           HPER YRGA PPP   E  L     ++Q      +    V          S RG++IDLN
Sbjct: 121 HPEREYRGAFPPPKIWEEMLQQETLRRQHGQGEGSSGGNVEGRARLSSLPSGRGIEIDLN 180

Query: 207 QP--STADDGDWPEKTGGVGFDLNADPPPGSDDED 230
            P    A+  ++P       FDLN +P P +++ED
Sbjct: 181 DPEEQEANKDEFP-------FDLN-EPAPENEEED 204

The following BLAST results are available for this feature:

BLAST of CmaCh06G001600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G001600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0X7_CUCSA	2.8e-71	66.40	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G001720 PE=4 SV=1	[more]
A0A0A0KGW4_CUCSA	1.9e-14	42.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G509590 PE=4 SV=1	[more]
A0A067LGT5_JATCU	5.4e-14	38.10	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22382 PE=4 SV=1	[more]
B9S6T8_RICCO	1.3e-12	33.18	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0873820 PE=4 SV=1	[more]
A0A0D2QT35_GOSRA	6.6e-12	37.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G198600 PE=4 SV=1	[more]

BLAST of CmaCh06G001600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35700.1	3.7e-14	38.82	zinc finger (C2H2 type) family protein	[more]
AT4G35610.1	1.2e-12	36.08	zinc finger (C2H2 type) family protein	[more]
AT2G26940.1	2.0e-07	42.22	C2H2-type zinc finger family protein	[more]
AT5G56200.1	9.7e-07	55.56	C2H2 type zinc finger transcription factor family	[more]
AT4G35280.1	1.7e-06	40.51	C2H2-like zinc finger protein	[more]

BLAST of CmaCh06G001600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096552\|ref\|XP_008449156.1\|	1.7e-74	68.95	PREDICTED: uncharacterized protein LOC103491103 [Cucumis melo]	[more]
gi\|778688264\|ref\|XP_011652703.1\|	4.0e-71	66.40	PREDICTED: uncharacterized protein LOC105435052 [Cucumis sativus]	[more]
gi\|778722509\|ref\|XP_011658503.1\|	2.7e-14	42.48	PREDICTED: zinc finger protein ZAT4-like [Cucumis sativus]	[more]
gi\|643737706\|gb\|KDP43755.1\|	7.7e-14	38.10	hypothetical protein JCGZ_22382 [Jatropha curcas]	[more]
gi\|659081072\|ref\|XP_008441135.1\|	6.5e-13	40.65	PREDICTED: zinc finger protein ZAT4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G001600.1	CmaCh06G001600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PFAM	PF13912	zf-C2H2_6	coord: 126..149 score: 7.
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 127..147 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 125..147 score: 8
None	No IPR available	PANTHER	PTHR26374	FAMILY NOT NAMED	coord: 112..160 score: 1.3
None	No IPR available	PANTHER	PTHR26374:SF186	SUBFAMILY NOT NAMED	coord: 112..160 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G001600	Cucsa.323160	Cucumber (Gy14) v1	cgycmaB0898
CmaCh06G001600	Cla008950	Watermelon (97103) v1	cmawmB782
CmaCh06G001600	Csa3G001720	Cucumber (Chinese Long) v2	cmacuB827
CmaCh06G001600	MELO3C013717	Melon (DHL92) v3.5.1	cmameB765
CmaCh06G001600	ClCG10G000200	Watermelon (Charleston Gray)	cmawcgB728
CmaCh06G001600	CSPI03G00230	Wild cucumber (PI 183967)	cmacpiB840
CmaCh06G001600	CmoCh06G001510	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G001600	CmoCh16G013340	Cucurbita moschata (Rifu)	cmacmoB805
CmaCh06G001600	Lsi07G010480	Bottle gourd (USVL1VR-Ls)	cmalsiB776
CmaCh06G001600	Cp4.1LG14g10640	Cucurbita pepo (Zucchini)	cmacpeB815
CmaCh06G001600	Cp4.1LG08g12740	Cucurbita pepo (Zucchini)	cmacpeB852
CmaCh06G001600	MELO3C013717.2	Melon (DHL92) v3.6.1	cmamedB870
CmaCh06G001600	CsaV3_3G000220	Cucumber (Chinese Long) v3	cmacucB0977
CmaCh06G001600	Cla97C10G184740	Watermelon (97103) v2	cmawmbB846
CmaCh06G001600	CsGy3G000190	Cucumber (Gy14) v2	cgybcmaB440
CmaCh06G001600	Carg19433	Silver-seed gourd	carcmaB0598
CmaCh06G001600	Carg01175	Silver-seed gourd	carcmaB0216

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G001600	CmaCh16G012810	Cucurbita maxima (Rimu)	cmacmaB355

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G001600	Wax gourd	cmawgoB0983