Cp4.1LG08g12310 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g12310
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSelenoprotein t
LocationCp4.1LG08 : 8934823 .. 8938369 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACAATTTTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAAACCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGGTGAATGATTTTCATGTTTGATTGGATTCATCTTGATTTTTGTTCGTGTTTTGTGATATTCAGCAACTTGATTTGTTGTCTTGGTTTTGGAATGCAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAGTAAGTGAATCAAACGCTTATGTGGTTTTCCTTCCAGTGTTTTTTCTTAACATCCTTGATGGAAGCGAACATTTTAATTTCTATCTCACTTGTGGTTGTTGAGAGTCCCTAGGATGAAAAACTGGCTGTACGCTGGAATGTTCGCTGTTGTTGTTCCTTTAAACTCGATTTCGTTGTTTTTTGTTTTTTCTTCTTTATTTTCCACAACGCAGGCCTCTTTTATTATCTTGGACTTTAATTTCATTCCTCGATTTAACAGACGTTTCGATTTCTATACTCTCTTGTGGTTGTTTTTGTGAGAATATTACTCTCTAGTGGTTGTTGAGATTCGTTATGATGAATAGTTGGTTGTACTTCGGAATTTTCCCTGTTGTTGTTCATCTAAACTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAGGTTTCTGTTATTATGTTTATATTCGTCTATTGATCAAACAAACATTTCCATTTCTCTGCTATGAACTATCTAGTGGTTGCTGAGAGTCCTTATGATGAAAAATTAGTCGTACTTTGGAACAACATGATTTCTTTGTTTTTTTTCATTTGATTAGCACAGGTTTCTTTTATTTCTGTAACATCCTCGATTGAACCAGTATTTCAATTTCTCCACTCTTTCGTGGTTGTTGAGAATCATCATTATGAAAAACTGTGCCGTACTCTGCTGCACTGTTGTCGTTCTGTTAAACATTGTCTAAGTTTTTTTTATCATCGTCAACTTCCTCAGTTGAACAAATATTTCAATTTCTCCTCTCTAGCGGCTATTGAGAGTCATTATAATGGAAAACTGGTTGTACTCTTCTTCATTGTTCTATTTAAAGAATCCGAGTTTGAGTGAACATAGGTGCAGACCTCAATTCAGAAATACAATTTGTAATTATTCCATTCGGAGCCAACTTCACATCGTTTGGTACTTAGGTTACCTGATTTGGAGCAAGACAGAAATGGAAGTTTCAATTGACCTCCCCTTTTTGAGACTGTAATTAAATGAACTTCTCGTGCTTTAGCGTGTCCATTTATAAGCAACTTCATTAGAGTATGTTTTGCAAGCTTAATTTAATTAGATATAAGAACAGGTTAATGTGCAGACTACTCAATGTTTAGGTTTGGGATAAAAAGTGATCTGGATTCACGATGATAGAATTTTGGTCTCTGCTCATAGAGCATAAGAATTGAACACAAGTGGGCCAAAAGTGAACTGGATTTACAATTGTTATTACACGAGATAGTTTTAAAAAGAATTTCACTCGTGACCCCAAGTGGGCCAATAGATCGTCCCAATGTTATTCACAGATAGGAGATGTTATGAACCCGTGTCCATGCATTTGATCCATACGTTTTGGAATGTTTTCATTAAAATGTTGTTGTACCATCATCTTATCTCAATTTGTGGCAGTGCTTATGATTTTACACTTGTTGCAGAGGTACTGCAATAACGATGAAAAATATGCTGGAGTCATCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTATCCCCCACTCCTCCCAAAGCGTCTTCTCAGTAAAGTAGTACCCGTCGTCCAATTTGGAATCATTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTAGAAGCATCGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCGTTCTTACAAAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTATGATTCTTTTGAAAGCCCATTCTGGTCATTTTTAGTGAGATGCTGTTTACTGATCGTATCCATTTTCTGATGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTGGTGAGATCGAGTTGAGAGACGTTATTGGTAGGAAACTTTCTGGGTCAAGATTTGTTGACGACTCAGGAGGGGTTTGGTCATAGGTATGTTACTTCTTGTGATCAATACTACCAAATTAACAACTGGTGTGATGTCATGACAAATCTAATCCTAGTTTATAATAGCCAAGCAGGAGCATGTTTGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGTAACGTTTCTTTCCTACGAAATCAAACTTTTAAACTTTCAAATTTCAAAATAACTTGATTTATACTAATTAATTACCTCCTGTTTCATTAATATTTGCTTCTTATAAGGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTAATAGACTTTGCTGGTGAGCAGACCAATGGTATCATTTACTATTAACTTCGGAAATGTTTGTTTAAAAATGAACTAATGAGTAGTGCTGTAAGGATTTTGATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTAAGAATTCACAAATCTATGAAAAAAAAATTTAAAATTTTAATCTTTTATTAGACACCATATTTAGTTTTATGTATAATTAATTTGTGAATGACTCATTTGACAATCTCTATATACAAAATTATCTAGTATTTTTTTTTATAAGTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCATGTTTAATTCTTGTTCATAAACGCTTGCTTCAAACTTGTAAATTTTTATATCACGTGACATCTATGTGGCATCAATTTATATTTTTTCCCATCTACTGAAACTAATAAATTGAGATACAAAATTCAAATTATTGGCCAAAATATTTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTGCAAAATAAAAAAAAAATTATATATGTATGCATGTATGTACGTATATATGCATGAATTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAAAATTAAAAAAAGAACAAAATTATGTATTTTCACCA

mRNA sequence

GGACAATTTTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAAACCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAAGGTACTGCAATAACGATGAAAAATATGCTGGAGTCATCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTATCCCCCACTCCTCCCAAAGCGTCTTCTCAGTAAAGTAGTACCCGTCGTCCAATTTGGAATCATTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTAGAAGCATCGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCGTTCTTACAAAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGTTGAAGGAGCAGTGATTTCCTGGTGAGATCGAGTTGAGAGACGTTATTGGTAGGAAACTTTCTGGGTCAAGATTTGTTGACGACTCAGGAGGGGTTTGGTCATAGCCAAGCAGGAGCATGTTTGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTAATAGACTTTGCTGGTGAGCAGACCAATGGTATCATTTACTATTAACTTCGGAAATGTTTGTTTAAAAATGAACTAATGAGTAGTGCTGTAAGGATTTTGATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTAAGAATTCACAAATCTATGAAAAAAAAATTTAAAATTTTAATCTTTTATTAGACACCATATTTAGTTTTATGTATAATTAATTTGTGAATGACTCATTTGACAATCTCTATATACAAAATTATCTAGTATTTTTTTTTATAAGTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCATGTTTAATTCTTGTTCATAAACGCTTGCTTCAAACTTGTAAATTTTTATATCACGTGACATCTATGTGGCATCAATTTATATTTTTTCCCATCTACTGAAACTAATAAATTGAGATACAAAATTCAAATTATTGGCCAAAATATTTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTGCAAAATAAAAAAAAAATTATATATGTATGCATGTATGTACGTATATATGCATGAATTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAAAATTAAAAAAAGAACAAAATTATGTATTTTCACCA

Coding sequence (CDS)

ATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAA

Protein sequence

MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQSGIGGIGHGSVININFRVSCSSGSSSSLL
Homology
[Close]
BLAST of Cp4.1LG08g12310 vs. Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E ++FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          +G   +G+G+ + INF +SCS
Sbjct: 61 TG---VGYGNTVEINFCISCS 68

[Close]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match: E5GBE6_CUCME (Selenoprotein t OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRT+I LLGLPIFLL TDIVNLFTPPPPKPA NH PPRVHYQPKS+SVIQEP+EFPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match: A0A0A0LCS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731110 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-29
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRTQ+ LLGLPI LL TDIVNLFTPPPPKPA NH PPRVHYQPKS+ VIQEP EFPTEK
Sbjct: 1  MDRTQMVLLGLPILLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQPVIQEPPEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCSSGSSS 87
          +S IGGIG GSVININF VSCS  S++
Sbjct: 61 RSVIGGIGQGSVININFCVSCSYRSTA 87

[Close]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match: V4L680_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010643mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1   MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
           MDRTQ+ LLGLPIFL  +D+ NLFTPPPPK  NH PP + +  +  + + E ++FP+++ 
Sbjct: 40  MDRTQLILLGLPIFLFCSDLFNLFTPPPPKSQNHPPPPISHPQRPATFVPETLDFPSQQS 99

Query: 61  SGIGGIGHGSVININFRVSCS 82
           SG+GGIG+G+ + I F VSCS
Sbjct: 100 SGLGGIGYGNTVEIKFCVSCS 120

[Close]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match: R0GBF1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027081mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANH---SPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP +H    PP + +Q +  S+I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQSHHPHQPPHIPHQHRPASIIPETLDFPS 60

Query: 61 EKQSGIGGIGHGSVININFRVSCS 82
          +K SG+G IG+G  + INF VSCS
Sbjct: 61 QKTSGLGAIGYGHTVEINFCVSCS 84

[Close]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match: D7SY21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MDR Q+ L+GLP+FL  +DI+NLFTPPPPKP    PP  H+Q         P++FPT+K+
Sbjct: 1  MDRAQLLLVGLPLFLFFSDIINLFTPPPPKP----PPHHHHQQPQPKPQSAPLDFPTQKE 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          SGIGGIG G+ +NINF  SCS
Sbjct: 61 SGIGGIGFGNTVNINFCSSCS 77

[Close]
BLAST of Cp4.1LG08g12310 vs. TAIR10
Match: AT5G58640.1 (AT5G58640.1 Selenoprotein, Rdx type)

HSP 1 Score: 94.0 bits (232), Expect = 5.1e-20
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFRVSCS 82
          +K SG+GG IG+G+ + INF VSCS
Sbjct: 61 QKTSGLGGAIGYGNTVEINFCVSCS 85

[Close]
BLAST of Cp4.1LG08g12310 vs. TAIR10
Match: AT3G47300.1 (AT3G47300.1 SELT-like protein precursor)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-15
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E ++FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          +G   +G+G+ + INF +SCS
Sbjct: 61 TG---VGYGNTVEINFCISCS 68

[Close]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match: gi|659083535|ref|XP_008442408.1| (PREDICTED: selT-like protein [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRT+I LLGLPIFLL TDIVNLFTPPPPKPA NH PPRVHYQPKS+SVIQEP+EFPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match: gi|449439880|ref|XP_004137713.1| (PREDICTED: selT-like protein [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRTQ+ LLGLPI LL TDIVNLFTPPPPKPA NH PPRVHYQPKS+ VIQEP EFPTEK
Sbjct: 1  MDRTQMVLLGLPILLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQPVIQEPPEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCSSGSSS 87
          +S IGGIG GSVININF VSCS  S++
Sbjct: 61 RSVIGGIGQGSVININFCVSCSYRSTA 87

[Close]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match: gi|567189449|ref|XP_006404397.1| (hypothetical protein EUTSA_v10010643mg [Eutrema salsugineum])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1 

Query: 1   MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
           MDRTQ+ LLGLPIFL  +D+ NLFTPPPPK  NH PP + +  +  + + E ++FP+++ 
Sbjct: 40  MDRTQLILLGLPIFLFCSDLFNLFTPPPPKSQNHPPPPISHPQRPATFVPETLDFPSQQS 99

Query: 61  SGIGGIGHGSVININFRVSCS 82
           SG+GGIG+G+ + I F VSCS
Sbjct: 100 SGLGGIGYGNTVEIKFCVSCS 120

[Close]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match: gi|565434748|ref|XP_006281061.1| (hypothetical protein CARUB_v10027081mg [Capsella rubella])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANH---SPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP +H    PP + +Q +  S+I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQSHHPHQPPHIPHQHRPASIIPETLDFPS 60

Query: 61 EKQSGIGGIGHGSVININFRVSCS 82
          +K SG+G IG+G  + INF VSCS
Sbjct: 61 QKTSGLGAIGYGHTVEINFCVSCS 84

[Close]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match: gi|225439410|ref|XP_002264265.1| (PREDICTED: selT-like protein [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1 

Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MDR Q+ L+GLP+FL  +DI+NLFTPPPPKP    PP  H+Q         P++FPT+K+
Sbjct: 1  MDRAQLLLVGLPLFLFFSDIINLFTPPPPKP----PPHHHHQQPQPKPQSAPLDFPTQKE 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          SGIGGIG G+ +NINF  SCS
Sbjct: 61 SGIGGIGFGNTVNINFCSSCS 77

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g12310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SELT_ARATH3.0e-1449.38SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2[more]
BLAST of Cp4.1LG08g12310 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBE6_CUCME1.2e-3086.59Selenoprotein t OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LCS3_CUCSA8.8e-2980.46Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731110 PE=4 SV=1[more]
V4L680_EUTSA9.1e-1853.09Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010643mg PE=4 SV=1[more]
R0GBF1_9BRAS9.1e-1854.76Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027081mg PE=4 SV=1[more]
D7SY21_VITVI3.4e-1756.79Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=... [more]
BLAST of Cp4.1LG08g12310 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58640.15.1e-2054.12 Selenoprotein, Rdx type[more]
AT3G47300.11.7e-1549.38 SELT-like protein precursor[more]
BLAST of Cp4.1LG08g12310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083535|ref|XP_008442408.1|1.8e-3086.59PREDICTED: selT-like protein [Cucumis melo][more]
gi|449439880|ref|XP_004137713.1|1.3e-2880.46PREDICTED: selT-like protein [Cucumis sativus][more]
gi|567189449|ref|XP_006404397.1|1.3e-1753.09hypothetical protein EUTSA_v10010643mg [Eutrema salsugineum][more]
gi|565434748|ref|XP_006281061.1|1.3e-1754.76hypothetical protein CARUB_v10027081mg [Capsella rubella][more]
gi|225439410|ref|XP_002264265.1|4.9e-1756.79PREDICTED: selT-like protein [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019389Selenoprotein_T
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0008150 biological_process
cellular_component GO:0005623 cell
cellular_component GO:0005575 cellular_component
molecular_function GO:0008430 selenium binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g12310.1Cp4.1LG08g12310.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019389Selenoprotein TPANTHERPTHR13544SELENOPROTEIN Tcoord: 1..81
score: 2.8
NoneNo IPR availablePANTHERPTHR13544:SF0SELENOPROTEIN Tcoord: 1..81
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g12310CmaCh14G000600Cucurbita maxima (Rimu)cmacpeB296
Cp4.1LG08g12310CmoCh14G000530Cucurbita moschata (Rifu)cmocpeB259
Cp4.1LG08g12310CmoCh06G002170Cucurbita moschata (Rifu)cmocpeB797
Cp4.1LG08g12310Cla017997Watermelon (97103) v1cpewmB827
Cp4.1LG08g12310MELO3C009158Melon (DHL92) v3.5.1cpemeB796
Cp4.1LG08g12310ClCG10G022210Watermelon (Charleston Gray)cpewcgB765
Cp4.1LG08g12310Lsi03G022220Bottle gourd (USVL1VR-Ls)cpelsiB707
Cp4.1LG08g12310CsaV3_3G033680Cucumber (Chinese Long) v3cpecucB1057
Cp4.1LG08g12310Bhi11G001528Wax gourdcpewgoB1086
Cp4.1LG08g12310Carg01111Silver-seed gourdcarcpeB0233
Cp4.1LG08g12310Carg12470Silver-seed gourdcarcpeB1393
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g12310Cp4.1LG03g03060Cucurbita pepo (Zucchini)cpecpeB487
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g12310Cucurbita pepo (Zucchini)cpecpeB105
Cp4.1LG08g12310Cucurbita pepo (Zucchini)cpecpeB408
Cp4.1LG08g12310Cucurbita pepo (Zucchini)cpecpeB429
Cp4.1LG08g12310Cucumber (Gy14) v1cgycpeB0104
Cp4.1LG08g12310Cucumber (Gy14) v1cgycpeB0490
Cp4.1LG08g12310Cucurbita maxima (Rimu)cmacpeB691
Cp4.1LG08g12310Cucurbita maxima (Rimu)cmacpeB758
Cp4.1LG08g12310Cucurbita maxima (Rimu)cmacpeB757
Cp4.1LG08g12310Cucurbita maxima (Rimu)cmacpeB852
Cp4.1LG08g12310Cucurbita maxima (Rimu)cmacpeB894
Cp4.1LG08g12310Cucurbita moschata (Rifu)cmocpeB643
Cp4.1LG08g12310Cucurbita moschata (Rifu)cmocpeB711
Cp4.1LG08g12310Cucurbita moschata (Rifu)cmocpeB832
Cp4.1LG08g12310Wild cucumber (PI 183967)cpecpiB862
Cp4.1LG08g12310Wild cucumber (PI 183967)cpecpiB872
Cp4.1LG08g12310Cucumber (Chinese Long) v2cpecuB860
Cp4.1LG08g12310Cucumber (Chinese Long) v2cpecuB870
Cp4.1LG08g12310Bottle gourd (USVL1VR-Ls)cpelsiB703
Cp4.1LG08g12310Watermelon (Charleston Gray)cpewcgB785
Cp4.1LG08g12310Watermelon (97103) v1cpewmB849
Cp4.1LG08g12310Cucumber (Gy14) v2cgybcpeB149
Cp4.1LG08g12310Cucumber (Gy14) v2cgybcpeB455
Cp4.1LG08g12310Cucumber (Gy14) v2cgybcpeB576
Cp4.1LG08g12310Cucumber (Gy14) v2cgybcpeB886
Cp4.1LG08g12310Melon (DHL92) v3.6.1cpemedB935
Cp4.1LG08g12310Melon (DHL92) v3.6.1cpemedB937
Cp4.1LG08g12310Melon (DHL92) v3.6.1cpemedB959
Cp4.1LG08g12310Silver-seed gourdcarcpeB0792
Cp4.1LG08g12310Silver-seed gourdcarcpeB0832
Cp4.1LG08g12310Silver-seed gourdcarcpeB0952
Cp4.1LG08g12310Cucumber (Chinese Long) v3cpecucB1043
Cp4.1LG08g12310Cucumber (Chinese Long) v3cpecucB1066
Cp4.1LG08g12310Wax gourdcpewgoB1130