Cp4.1LG08g12310.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g12310.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Selenoprotein t
Location	Cp4.1LG08 : 8934823 .. 8938369 (+)
Sequence length	1702

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACAATTTTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAAACCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGGTGAATGATTTTCATGTTTGATTGGATTCATCTTGATTTTTGTTCGTGTTTTGTGATATTCAGCAACTTGATTTGTTGTCTTGGTTTTGGAATGCAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAGTAAGTGAATCAAACGCTTATGTGGTTTTCCTTCCAGTGTTTTTTCTTAACATCCTTGATGGAAGCGAACATTTTAATTTCTATCTCACTTGTGGTTGTTGAGAGTCCCTAGGATGAAAAACTGGCTGTACGCTGGAATGTTCGCTGTTGTTGTTCCTTTAAACTCGATTTCGTTGTTTTTTGTTTTTTCTTCTTTATTTTCCACAACGCAGGCCTCTTTTATTATCTTGGACTTTAATTTCATTCCTCGATTTAACAGACGTTTCGATTTCTATACTCTCTTGTGGTTGTTTTTGTGAGAATATTACTCTCTAGTGGTTGTTGAGATTCGTTATGATGAATAGTTGGTTGTACTTCGGAATTTTCCCTGTTGTTGTTCATCTAAACTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNAGGTTTCTGTTATTATGTTTATATTCGTCTATTGATCAAACAAACATTTCCATTTCTCTGCTATGAACTATCTAGTGGTTGCTGAGAGTCCTTATGATGAAAAATTAGTCGTACTTTGGAACAACATGATTTCTTTGTTTTTTTTCATTTGATTAGCACAGGTTTCTTTTATTTCTGTAACATCCTCGATTGAACCAGTATTTCAATTTCTCCACTCTTTCGTGGTTGTTGAGAATCATCATTATGAAAAACTGTGCCGTACTCTGCTGCACTGTTGTCGTTCTGTTAAACATTGTCTAAGTTTTTTTTATCATCGTCAACTTCCTCAGTTGAACAAATATTTCAATTTCTCCTCTCTAGCGGCTATTGAGAGTCATTATAATGGAAAACTGGTTGTACTCTTCTTCATTGTTCTATTTAAAGAATCCGAGTTTGAGTGAACATAGGTGCAGACCTCAATTCAGAAATACAATTTGTAATTATTCCATTCGGAGCCAACTTCACATCGTTTGGTACTTAGGTTACCTGATTTGGAGCAAGACAGAAATGGAAGTTTCAATTGACCTCCCCTTTTTGAGACTGTAATTAAATGAACTTCTCGTGCTTTAGCGTGTCCATTTATAAGCAACTTCATTAGAGTATGTTTTGCAAGCTTAATTTAATTAGATATAAGAACAGGTTAATGTGCAGACTACTCAATGTTTAGGTTTGGGATAAAAAGTGATCTGGATTCACGATGATAGAATTTTGGTCTCTGCTCATAGAGCATAAGAATTGAACACAAGTGGGCCAAAAGTGAACTGGATTTACAATTGTTATTACACGAGATAGTTTTAAAAAGAATTTCACTCGTGACCCCAAGTGGGCCAATAGATCGTCCCAATGTTATTCACAGATAGGAGATGTTATGAACCCGTGTCCATGCATTTGATCCATACGTTTTGGAATGTTTTCATTAAAATGTTGTTGTACCATCATCTTATCTCAATTTGTGGCAGTGCTTATGATTTTACACTTGTTGCAGAGGTACTGCAATAACGATGAAAAATATGCTGGAGTCATCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTATCCCCCACTCCTCCCAAAGCGTCTTCTCAGTAAAGTAGTACCCGTCGTCCAATTTGGAATCATTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTAGAAGCATCGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCGTTCTTACAAAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTATGATTCTTTTGAAAGCCCATTCTGGTCATTTTTAGTGAGATGCTGTTTACTGATCGTATCCATTTTCTGATGGTCTTTTCGAAGTTGAAGGAGCAGTGATTTCCTGGTGAGATCGAGTTGAGAGACGTTATTGGTAGGAAACTTTCTGGGTCAAGATTTGTTGACGACTCAGGAGGGGTTTGGTCATAGGTATGTTACTTCTTGTGATCAATACTACCAAATTAACAACTGGTGTGATGTCATGACAAATCTAATCCTAGTTTATAATAGCCAAGCAGGAGCATGTTTGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGTAACGTTTCTTTCCTACGAAATCAAACTTTTAAACTTTCAAATTTCAAAATAACTTGATTTATACTAATTAATTACCTCCTGTTTCATTAATATTTGCTTCTTATAAGGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTAATAGACTTTGCTGGTGAGCAGACCAATGGTATCATTTACTATTAACTTCGGAAATGTTTGTTTAAAAATGAACTAATGAGTAGTGCTGTAAGGATTTTGATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTAAGAATTCACAAATCTATGAAAAAAAAATTTAAAATTTTAATCTTTTATTAGACACCATATTTAGTTTTATGTATAATTAATTTGTGAATGACTCATTTGACAATCTCTATATACAAAATTATCTAGTATTTTTTTTTATAAGTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCATGTTTAATTCTTGTTCATAAACGCTTGCTTCAAACTTGTAAATTTTTATATCACGTGACATCTATGTGGCATCAATTTATATTTTTTCCCATCTACTGAAACTAATAAATTGAGATACAAAATTCAAATTATTGGCCAAAATATTTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTGCAAAATAAAAAAAAAATTATATATGTATGCATGTATGTACGTATATATGCATGAATTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAAAATTAAAAAAAGAACAAAATTATGTATTTTCACCA

mRNA sequence

GGACAATTTTAGCCTTCAATTGGCGTCATATTTTCGTTTGTAAATTTTCCTTTTTCCCCCAAAACCTTCTCGTGGAAGTGAGTATCTGGTTCTCGAGAGCTTTGCATTGTTGACTCCGATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAAAAGTTTGTGTCTATCTGTCTCATTTTGGGCGGAAAAGGTACTGCAATAACGATGAAAAATATGCTGGAGTCATCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTATCCCCCACTCCTCCCAAAGCGTCTTCTCAGTAAAGTAGTACCCGTCGTCCAATTTGGAATCATTGCAACAATAATGGCGGGGGAACAGATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCTAATAGGTTAGAAGCATCGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCGTTCTTACAAAGTTCTGGAGCCTTCGAAGTATATTGCAATGGTGAAATGTTGAAGGAGCAGTGATTTCCTGGTGAGATCGAGTTGAGAGACGTTATTGGTAGGAAACTTTCTGGGTCAAGATTTGTTGACGACTCAGGAGGGGTTTGGTCATAGCCAAGCAGGAGCATGTTTGAGAGATAGATCCAGTTTCAATATGCCTATCCTAAACATAATCCCTGGCTAGCGAAACAGTTTGAAGCCTGCTGCGCTACCCAAAGTAAGCCGCCGATAACCTTTTTGGCTGCCTATCAACAGGTAATAGACTTTGCTGGTGAGCAGACCAATGGTATCATTTACTATTAACTTCGGAAATGTTTGTTTAAAAATGAACTAATGAGTAGTGCTGTAAGGATTTTGATAACAACATCTAGGTTTTTAAACTAAAAAAATTTAAATTTCAACTTTATTAAGAATTCACAAATCTATGAAAAAAAAATTTAAAATTTTAATCTTTTATTAGACACCATATTTAGTTTTATGTATAATTAATTTGTGAATGACTCATTTGACAATCTCTATATACAAAATTATCTAGTATTTTTTTTTATAAGTATAAGTACATCAAACTTTAGTGATTAATTTATAATATAACTAAGAAAATTCTCACCATGTACAATATTTTGATGATGAATATAGAGTTAGGCATGTTTAATTCTTGTTCATAAACGCTTGCTTCAAACTTGTAAATTTTTATATCACGTGACATCTATGTGGCATCAATTTATATTTTTTCCCATCTACTGAAACTAATAAATTGAGATACAAAATTCAAATTATTGGCCAAAATATTTATGTTGAAGCTTTTCTATTTGAGAAAGTATATGAAAAGTTCTTGTTTTCGTTGCAAAATAAAAAAAAAATTATATATGTATGCATGTATGTACGTATATATGCATGAATTGCAAAACTGGGATACTGATGAAAAAATAAACACAAAAAATTAAAAAAAGAACAAAATTATGTATTTTCACCA

Coding sequence (CDS)

ATGGATCGAACACAGATAGATCTGTTAGGGCTGCCGATCTTTCTGCTTTTGACTGATATTGTGAATCTTTTTACTCCTCCGCCTCCTAAACCGGCCAATCACTCTCCACCTCGAGTTCACTATCAGCCTAAATCTGAATCAGTCATCCAGGAACCGATTGAATTTCCTACGGAGAAACAGAGCGGAATCGGAGGAATTGGCCATGGCAGCGTTATCAATATCAATTTCCGCGTTTCTTGTTCTTCAGGTAGTTCATCTTCATTATTATAA

Protein sequence

MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQSGIGGIGHGSVININFRVSCSSGSSSSLL

Homology

[Close]

BLAST of Cp4.1LG08g12310.1 vs. Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 3.0e-14
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E ++FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          +G   +G+G+ + INF +SCS
Sbjct: 61 TG---VGYGNTVEINFCISCS 68

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL
Match: E5GBE6_CUCME (Selenoprotein t OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.2e-30
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRT+I LLGLPIFLL TDIVNLFTPPPPKPA NH PPRVHYQPKS+SVIQEP+EFPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL
Match: A0A0A0LCS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731110 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 8.8e-29
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRTQ+ LLGLPI LL TDIVNLFTPPPPKPA NH PPRVHYQPKS+ VIQEP EFPTEK
Sbjct: 1  MDRTQMVLLGLPILLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQPVIQEPPEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCSSGSSS 87
          +S IGGIG GSVININF VSCS  S++
Sbjct: 61 RSVIGGIGQGSVININFCVSCSYRSTA 87

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL
Match: V4L680_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010643mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
           MDRTQ+ LLGLPIFL  +D+ NLFTPPPPK  NH PP + +  +  + + E ++FP+++ 
Sbjct: 40  MDRTQLILLGLPIFLFCSDLFNLFTPPPPKSQNHPPPPISHPQRPATFVPETLDFPSQQS 99

Query: 61  SGIGGIGHGSVININFRVSCS 82
           SG+GGIG+G+ + I F VSCS
Sbjct: 100 SGLGGIGYGNTVEIKFCVSCS 120

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL
Match: R0GBF1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027081mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-18
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANH---SPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP +H    PP + +Q +  S+I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQSHHPHQPPHIPHQHRPASIIPETLDFPS 60

Query: 61 EKQSGIGGIGHGSVININFRVSCS 82
          +K SG+G IG+G  + INF VSCS
Sbjct: 61 QKTSGLGAIGYGHTVEINFCVSCS 84

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL
Match: D7SY21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.4e-17
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MDR Q+ L+GLP+FL  +DI+NLFTPPPPKP    PP  H+Q         P++FPT+K+
Sbjct: 1  MDRAQLLLVGLPLFLFFSDIINLFTPPPPKP----PPHHHHQQPQPKPQSAPLDFPTQKE 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          SGIGGIG G+ +NINF  SCS
Sbjct: 61 SGIGGIGFGNTVNINFCSSCS 77

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TAIR10
Match: AT5G58640.1 (AT5G58640.1 Selenoprotein, Rdx type)

HSP 1 Score: 94.0 bits (232), Expect = 5.1e-20
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKP---ANHSPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP     H PP + +Q +  ++I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60

Query: 61 EKQSGIGG-IGHGSVININFRVSCS 82
          +K SG+GG IG+G+ + INF VSCS
Sbjct: 61 QKTSGLGGAIGYGNTVEINFCVSCS 85

[Close]

BLAST of Cp4.1LG08g12310.1 vs. TAIR10
Match: AT3G47300.1 (AT3G47300.1 SELT-like protein precursor)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-15
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MD+TQ+ LLGLPIFLL +D+ NLFTPPPPK  + SPP           I E ++FP +K 
Sbjct: 1  MDKTQLILLGLPIFLLCSDLFNLFTPPPPKSQHQSPPS----------ISETLDFPAQKS 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          +G   +G+G+ + INF +SCS
Sbjct: 61 TG---VGYGNTVEINFCISCS 68

[Close]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr
Match: gi|659083535|ref|XP_008442408.1| (PREDICTED: selT-like protein [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 71/82 (86.59%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRT+I LLGLPIFLL TDIVNLFTPPPPKPA NH PPRVHYQPKS+SVIQEP+EFPTEK
Sbjct: 1  MDRTRIVLLGLPIFLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQSVIQEPLEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCS 82
          +S IGGIG GSVININF VSCS
Sbjct: 61 RSVIGGIGQGSVININFCVSCS 82

[Close]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr
Match: gi|449439880|ref|XP_004137713.1| (PREDICTED: selT-like protein [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPA-NHSPPRVHYQPKSESVIQEPIEFPTEK 60
          MDRTQ+ LLGLPI LL TDIVNLFTPPPPKPA NH PPRVHYQPKS+ VIQEP EFPTEK
Sbjct: 1  MDRTQMVLLGLPILLLFTDIVNLFTPPPPKPAANHPPPRVHYQPKSQPVIQEPPEFPTEK 60

Query: 61 QSGIGGIGHGSVININFRVSCSSGSSS 87
          +S IGGIG GSVININF VSCS  S++
Sbjct: 61 RSVIGGIGQGSVININFCVSCSYRSTA 87

[Close]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr
Match: gi|567189449|ref|XP_006404397.1| (hypothetical protein EUTSA_v10010643mg [Eutrema salsugineum])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 1   MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
           MDRTQ+ LLGLPIFL  +D+ NLFTPPPPK  NH PP + +  +  + + E ++FP+++ 
Sbjct: 40  MDRTQLILLGLPIFLFCSDLFNLFTPPPPKSQNHPPPPISHPQRPATFVPETLDFPSQQS 99

Query: 61  SGIGGIGHGSVININFRVSCS 82
           SG+GGIG+G+ + I F VSCS
Sbjct: 100 SGLGGIGYGNTVEIKFCVSCS 120

[Close]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr
Match: gi|565434748|ref|XP_006281061.1| (hypothetical protein CARUB_v10027081mg [Capsella rubella])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANH---SPPRVHYQPKSESVIQEPIEFPT 60
          MDR Q+ LLGLPIFL  +D+ NLFTPPPPKP +H    PP + +Q +  S+I E ++FP+
Sbjct: 1  MDRAQLILLGLPIFLFCSDLFNLFTPPPPKPQSHHPHQPPHIPHQHRPASIIPETLDFPS 60

Query: 61 EKQSGIGGIGHGSVININFRVSCS 82
          +K SG+G IG+G  + INF VSCS
Sbjct: 61 QKTSGLGAIGYGHTVEINFCVSCS 84

[Close]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr
Match: gi|225439410|ref|XP_002264265.1| (PREDICTED: selT-like protein [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 1  MDRTQIDLLGLPIFLLLTDIVNLFTPPPPKPANHSPPRVHYQPKSESVIQEPIEFPTEKQ 60
          MDR Q+ L+GLP+FL  +DI+NLFTPPPPKP    PP  H+Q         P++FPT+K+
Sbjct: 1  MDRAQLLLVGLPLFLFFSDIINLFTPPPPKP----PPHHHHQQPQPKPQSAPLDFPTQKE 60

Query: 61 SGIGGIGHGSVININFRVSCS 82
          SGIGGIG G+ +NINF  SCS
Sbjct: 61 SGIGGIGFGNTVNINFCSSCS 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g12310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SELT_ARATH	3.0e-14	49.38	SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2	[more]

BLAST of Cp4.1LG08g12310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBE6_CUCME	1.2e-30	86.59	Selenoprotein t OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LCS3_CUCSA	8.8e-29	80.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731110 PE=4 SV=1	[more]
V4L680_EUTSA	9.1e-18	53.09	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10010643mg PE=4 SV=1	[more]
R0GBF1_9BRAS	9.1e-18	54.76	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027081mg PE=4 SV=1	[more]
D7SY21_VITVI	3.4e-17	56.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=...	[more]

BLAST of Cp4.1LG08g12310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58640.1	5.1e-20	54.12	Selenoprotein, Rdx type	[more]
AT3G47300.1	1.7e-15	49.38	SELT-like protein precursor	[more]

BLAST of Cp4.1LG08g12310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083535\|ref\|XP_008442408.1\|	1.8e-30	86.59	PREDICTED: selT-like protein [Cucumis melo]	[more]
gi\|449439880\|ref\|XP_004137713.1\|	1.3e-28	80.46	PREDICTED: selT-like protein [Cucumis sativus]	[more]
gi\|567189449\|ref\|XP_006404397.1\|	1.3e-17	53.09	hypothetical protein EUTSA_v10010643mg [Eutrema salsugineum]	[more]
gi\|565434748\|ref\|XP_006281061.1\|	1.3e-17	54.76	hypothetical protein CARUB_v10027081mg [Capsella rubella]	[more]
gi\|225439410\|ref\|XP_002264265.1\|	4.9e-17	56.79	PREDICTED: selT-like protein [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019389	Selenoprotein_T

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
cellular_component	GO:0005623	cell
molecular_function	GO:0008430	selenium binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g12310	Cp4.1LG08g12310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g12310.1	Cp4.1LG08g12310.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g12310.1:five_prime_utr:001	Cp4.1LG08g12310.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g12310.1:cds:001	Cp4.1LG08g12310.1:cds:001	CDS
Cp4.1LG08g12310.1:cds:002	Cp4.1LG08g12310.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g12310.1:three_prime_utr:001	Cp4.1LG08g12310.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG08g12310.1:three_prime_utr:002	Cp4.1LG08g12310.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG08g12310.1:three_prime_utr:003	Cp4.1LG08g12310.1:three_prime_utr:003	three_prime_UTR
Cp4.1LG08g12310.1:three_prime_utr:004	Cp4.1LG08g12310.1:three_prime_utr:004	three_prime_UTR
Cp4.1LG08g12310.1:three_prime_utr:005	Cp4.1LG08g12310.1:three_prime_utr:005	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019389	Selenoprotein T	PANTHER	PTHR13544	SELENOPROTEIN T	coord: 1..81 score: 2.8
None	No IPR available	PANTHER	PTHR13544:SF0	SELENOPROTEIN T	coord: 1..81 score: 2.8