Lsi03G022220 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGGCCTAGGCCCATCCGACCCATTGCATGACTCGTGCACGTGCAGTTGGACTGGGTATATATACCGTAGTAGTTGGGAGTTAGGGACAAAGCCCGGCTGAGTTATTTTTTGAGGACAATTTTACCCTTCAATTGGCTTCATATTTTCGTTTGTAAGTTTTCCTTTTTCACCTCCCAAAATATTTCTCACCTTCTTTTCTGTTGGACTTCGAATCTCTGATTCTCGCGAGCGTTGGCGTCGTTGATTCCGATGGATCGAACTCAGATAGTTCTGTTAGGGCTGCCGATCTTTTTGCTTTTTACTGATATTGTGAATCTTTTCACTCCTCCGCCTCCGAAACCTGCCAGTCATCCTCCACCTCGAGTTCACTACCAGCCTAAATCTCAACCAGTCATCCAGGAACCGCCTGAATTTCCTACGGAGGTGAATGATTTCGTATTTGATTGGACTGCTCTTGATTTTTGATGTTGTTTTTGTGATATTCAGAAACTTAATTTGTTATTTAGTTTTGGAATACAGAAGCGGAGCGTAATCGGAGGAATTGGCCAGGGCTGCGTTATTAATATCAATTTCTGTGTTTCTTGTTCTTACAGGTAGTTCATCGTTTTGATTATTAATTTTTGTGTTTGTTTGTCTCATTTTGGGCGGGAAGTGAGTCAATCGAACGTTTATGTGATTTTCGTTTCCTGTGTTTTTTATGTTTTCCTCCATTTCTCATCGACTCTGATTGCGCATTAAATTACGGTAAACTTATAGTGAAGGAAAACTTGATTTATTTGCTTTGTTTTGTTTTAATTCAACAAGCACAGGTTTCTTTGATTGACGTTAACTTCCTTGATTGAACGAACATTTCAATATCTCTCTCTCTCTAATGGTTGTTTAGAGTCACTATGATGAAAATTTGGTTGTAGTCGGAATCTTTGCTGCTGTTCTTCCTCCGATTTTGCTGTTTTTGTTTATTGTTCTTGTTTTCCCCACAGCACAGGACTCTTTTGTTATTTTGAACTTCTTTCGGCAATTGAACAAACGTTTCAATTTCTCTGCTCTCTAGTGATTGTTTTTTTTAAGAGCATTACTCTCCAGTGGCTGTTGAGAGTCATTATGATGAACAATCGGTTGTACTTTGGAATTTTGCTTCTTGTTGTTCCTTTTAACTTCCTCGATTGAACAAACTTTTCGATTTCTCTACTGTCTACTGGTTGCTGAGAGTCAATATGATGAAAAATTAGCCGTACTTTGGAATCTTTACTGTTGGCTTTGATTTTTTTAACCTTGATCAGCATAGTTTTCTTTTATTTACGTAACATCCTCGATTGAATTAATATTTCAATTTCTCCACTCTTTCGTGGTTGTTGAGAGTCATTATAAAAAAAACAGGTTGTAGTCTTCTTCACGGTTGCTGTTCCTTGGAGAATGTGCCTTTTCTTGTTAAAGACTTGAGTCTTGAACGAACATAGTTTGCAGACCTCAATTCAGAAAAGTTCAGTAATAATTCCATATGGAGCCAGCTTCTCTATGTTAGGTTATATGATTTGTTGCAAGATATAGAAATGGATGTTTCATTTGACCTCTTCTGCTTGAGAACGTGATAACATGAACTTATTTATAACATGCGTTAGTATTGCCATTGATAAGCAACTTCTGTAGATTATGTTTTGTACGATTAATTTCATTAAGGTTTAGGAACAGGTTGATGTTAGACTCCCCATTGTTTAGCTTTGGGATAAGGAATGATCTGGATACTGGATGATGAAATTTTGTTGCCACTCATAGAGCTTAAGAATTGAGTAGAAGTCTAATTAGGAATCAGGATAGAGTTTACCTCGTATTTTTTTTCCGTAGTTGTTACACATGATAGTATCAGAAAAGACTTCACTCGTAGTGCATATAAGATATGATATCTTCGTGCATAGGTGATCAGAAGGCAAGGAATGAAGGGGATCAATAGATTAAGCCAATGTTCTTCATGGAGCATATATGATATGATATCTTCCCTTAATTGTATCAAATAAACATCTGACTGCCACTAAGTATAACTGTTGGTTATTATGTGAAGTCTAAGTATAATGTTCAGAAGCAGTGGCATGCATTTTATCCATACATTTTTGGGGTTTGGTCTTTAAAATGTAGTTGTACCATCATGTTATCTCAATTTGTGGAAATGTTTGATGTGAAATGATTTTAAACTCTTGTGGCAGAGGCACTGCAATAACAATGAAAAATATGCTGGAGTCGTCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTACCCCCCACCATTTCCAAAGCGCCTTCTTAGTAAAATAGTACCTGTAGTTCAATTTGGAATTATTGGAACAATAATGGCGGGAGAACATATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCAAATAGGTTTGGAAGCATTGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCATTCTTACAAAGTTCCGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTAAGATTCTTTTATATCTTTTTGTTTCCTCCTTTTTTTCTTGGTAAGATCTCTGTTTACTGACTATCCATTTTCTGAAGGTCTTTTCTAAGTTGAAAGAGCAGAGATTTCCTGGCGAGATTGAGTTGAGAGATCTTATTGGAAAGAAACTCTCTGGGCCGAGATTTTTCGACAACTCTGGAGGAGTTTGGTCATAGGTATGTGACTTCTTGTGATCATTGCCATCAAATTAGCAACTGGTGAAGTCTAGTCTAGATAATCTAATCCAAGTTTATCATAGCTAAGGGAGGAGCTTGTCTTTGAGAGATTTTCAATTTTATTGTGTCTATTAGTTATATACTTAACATTACTTACGTACTCCCTACTCCCTACTACCTTTATCTTACGAAATCAAAACTTTTAAGATTTCAAATTCATCCCACACAAAATGAAATTTCTAATTCTTCTGTTGATATCATGCA TGGGCCTAGGCCCATCCGACCCATTGCATGACTCGTGCACGTGCAGTTGGACTGGGTATATATACCGTAGTAGTTGGGAGTTAGGGACAAAGCCCGGCTGAGTTATTTTTTGAGGACAATTTTACCCTTCAATTGGCTTCATATTTTCGTTTGTAAGTTTTCCTTTTTCACCTCCCAAAATATTTCTCACCTTCTTTTCTGTTGGACTTCGAATCTCTGATTCTCGCGAGCGTTGGCGTCGTTGATTCCGATGGATCGAACTCAGATAGTTCTGTTAGGGCTGCCGATCTTTTTGCTTTTTACTGATATTGTGAATCTTTTCACTCCTCCGCCTCCGAAACCTGCCAGTCATCCTCCACCTCGAGTTCACTACCAGCCTAAATCTCAACCAGTCATCCAGGAACCGCCTGAATTTCCTACGGAGAAGCGGAGCGTAATCGGAGGAATTGGCCAGGGCTGCGTTATTAATATCAATTTCTGTGTTTCTTGTTCTTACAGAGGCACTGCAATAACAATGAAAAATATGCTGGAGTCGTCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTACCCCCCACCATTTCCAAAGCGCCTTCTTAGTAAAATAGTACCTGTAGTTCAATTTGGAATTATTGGAACAATAATGGCGGGAGAACATATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCAAATAGGTTTGGAAGCATTGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCATTCTTACAAAGTTCCGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTCTTTTCTAAGTTGAAAGAGCAGAGATTTCCTGGCGAGATTGAGTTGAGAGATCTTATTGGAAAGAAACTCTCTGGGCCGAGATTTTTCGACAACTCTGGAGGAGTTTGGTCATAGGTATGTGACTTCTTGTGATCATTGCCATCAAATTAGCAACTGGTGAAGTCTAGTCTAGATAATCTAATCCAAGTTTATCATAGCTAAGGGAGGAGCTTGTCTTTGAGAGATTTTCAATTTTATTGTGTCTATTAGTTATATACTTAACATTACTTACGTACTCCCTACTCCCTACTACCTTTATCTTACGAAATCAAAACTTTTAAGATTTCAAATTCATCCCACACAAAATGAAATTTCTAATTCTTCTGTTGATATCATGCA ATGGATCGAACTCAGATAGTTCTGTTAGGGCTGCCGATCTTTTTGCTTTTTACTGATATTGTGAATCTTTTCACTCCTCCGCCTCCGAAACCTGCCAGTCATCCTCCACCTCGAGTTCACTACCAGCCTAAATCTCAACCAGTCATCCAGGAACCGCCTGAATTTCCTACGGAGAAGCGGAGCGTAATCGGAGGAATTGGCCAGGGCTGCGTTATTAATATCAATTTCTGTGTTTCTTGTTCTTACAGAGGCACTGCAATAACAATGAAAAATATGCTGGAGTCGTCATTTCCTGGAGTTGAAGTTATTTTGGCAAATTACCCCCCACCATTTCCAAAGCGCCTTCTTAGTAAAATAGTACCTGTAGTTCAATTTGGAATTATTGGAACAATAATGGCGGGAGAACATATTTTTCCTAGGTTGGGGATGGCACCACCACCTTGGTACTATTCCTTGCGTGCAAATAGGTTTGGAAGCATTGCAAGCACTTGGCTGTTTGGAAATTTTATCCAGTCATTCTTACAAAGTTCCGGAGCCTTCGAAGTATATTGCAATGGTGAAATGGTCTTTTCTAAGTTGAAAGAGCAGAGATTTCCTGGCGAGATTGAGTTGAGAGATCTTATTGGAAAGAAACTCTCTGGGCCGAGATTTTTCGACAACTCTGGAGGAGTTTGGTCATAG MDRTQIVLLGLPIFLLFTDIVNLFTPPPPKPASHPPPRVHYQPKSQPVIQEPPEFPTEKRSVIGGIGQGCVININFCVSCSYRGTAITMKNMLESSFPGVEVILANYPPPFPKRLLSKIVPVVQFGIIGTIMAGEHIFPRLGMAPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVYCNGEMVFSKLKEQRFPGEIELRDLIGKKLSGPRFFDNSGGVWS
BLAST of Lsi03G022220 vs. Swiss-Prot
Match: SELT_ARATH (SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2) HSP 1 Score: 281.6 bits (719), Expect = 7.7e-75 Identity = 139/216 (64.35%), Postives = 169/216 (78.24%), Query Frame = 1
BLAST of Lsi03G022220 vs. Swiss-Prot
Match: HSP6_HETGL (Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 4.2e-20 Identity = 46/142 (32.39%), Postives = 79/142 (55.63%), Query Frame = 1
BLAST of Lsi03G022220 vs. Swiss-Prot
Match: SELT_DROME (SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14 Identity = 49/157 (31.21%), Postives = 77/157 (49.04%), Query Frame = 1
BLAST of Lsi03G022220 vs. Swiss-Prot
Match: SELT1_CAEEL (Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans GN=C35C5.3 PE=3 SV=2) HSP 1 Score: 78.2 bits (191), Expect = 1.3e-13 Identity = 38/142 (26.76%), Postives = 69/142 (48.59%), Query Frame = 1
BLAST of Lsi03G022220 vs. TrEMBL
Match: A0A0A0LCS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731110 PE=4 SV=1) HSP 1 Score: 435.6 bits (1119), Expect = 3.6e-119 Identity = 213/227 (93.83%), Postives = 217/227 (95.59%), Query Frame = 1
BLAST of Lsi03G022220 vs. TrEMBL
Match: E5GBE6_CUCME (Selenoprotein t OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 433.7 bits (1114), Expect = 1.4e-118 Identity = 212/227 (93.39%), Postives = 218/227 (96.04%), Query Frame = 1
BLAST of Lsi03G022220 vs. TrEMBL
Match: A5BN73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024323 PE=4 SV=1) HSP 1 Score: 336.3 bits (861), Expect = 2.9e-89 Identity = 162/229 (70.74%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Lsi03G022220 vs. TrEMBL
Match: D7SY21_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0105g00440 PE=4 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 6.6e-89 Identity = 163/228 (71.49%), Postives = 191/228 (83.77%), Query Frame = 1
BLAST of Lsi03G022220 vs. TrEMBL
Match: M5W272_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015809mg PE=4 SV=1) HSP 1 Score: 323.6 bits (828), Expect = 2.0e-85 Identity = 162/237 (68.35%), Postives = 189/237 (79.75%), Query Frame = 1
BLAST of Lsi03G022220 vs. TAIR10
Match: AT5G58640.1 (AT5G58640.1 Selenoprotein, Rdx type) HSP 1 Score: 298.9 bits (764), Expect = 2.6e-81 Identity = 146/226 (64.60%), Postives = 179/226 (79.20%), Query Frame = 1
BLAST of Lsi03G022220 vs. TAIR10
Match: AT3G47300.1 (AT3G47300.1 SELT-like protein precursor) HSP 1 Score: 281.6 bits (719), Expect = 4.4e-76 Identity = 139/216 (64.35%), Postives = 169/216 (78.24%), Query Frame = 1
BLAST of Lsi03G022220 vs. NCBI nr
Match: gi|449439880|ref|XP_004137713.1| (PREDICTED: selT-like protein [Cucumis sativus]) HSP 1 Score: 435.6 bits (1119), Expect = 5.1e-119 Identity = 213/227 (93.83%), Postives = 217/227 (95.59%), Query Frame = 1
BLAST of Lsi03G022220 vs. NCBI nr
Match: gi|659083535|ref|XP_008442408.1| (PREDICTED: selT-like protein [Cucumis melo]) HSP 1 Score: 433.7 bits (1114), Expect = 1.9e-118 Identity = 212/227 (93.39%), Postives = 218/227 (96.04%), Query Frame = 1
BLAST of Lsi03G022220 vs. NCBI nr
Match: gi|147854126|emb|CAN83419.1| (hypothetical protein VITISV_024323 [Vitis vinifera]) HSP 1 Score: 336.3 bits (861), Expect = 4.2e-89 Identity = 162/229 (70.74%), Postives = 190/229 (82.97%), Query Frame = 1
BLAST of Lsi03G022220 vs. NCBI nr
Match: gi|225439410|ref|XP_002264265.1| (PREDICTED: selT-like protein [Vitis vinifera]) HSP 1 Score: 335.1 bits (858), Expect = 9.4e-89 Identity = 163/228 (71.49%), Postives = 191/228 (83.77%), Query Frame = 1
BLAST of Lsi03G022220 vs. NCBI nr
Match: gi|719993037|ref|XP_010253762.1| (PREDICTED: selT-like protein [Nelumbo nucifera]) HSP 1 Score: 328.9 bits (842), Expect = 6.8e-87 Identity = 153/227 (67.40%), Postives = 186/227 (81.94%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |