Cp4.1LG08g06860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHSP20-like chaperones superfamily protein
LocationCp4.1LG08 : 5242268 .. 5243205 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTATGTTCTGCTAATTTTACTGTTTCTTCACATGTTCCAGTCGTGCATTTGATTATCTTTAGCCATTTCTGATTCTGATTATTCGCCATTTGTTGCGCTTAGAACAATGTGACGTTTTATATTCTTTAAGTTGGAATGATGTTTTCTTTTTTCTGGACCGATGCTTGTAGATGATGTCGTCTGTAATATGTTTGAATGGTTGCAAGACTGGTAAATGTGGGTTGAAATGGATGGAGTTGGGGTTTTGATCGCCTTGGTAGAAGAAGGTAGTAGTCAAGTCATCACCATAGATTTTCTCGTGTATGCAGTAGCCGTAACCCGGAGGTTCTATGGGCTCAGCGTTCTGATAAGCTTTATCTCACTGTTGCTTTACCTGATGCCAAAGATATTTCTGTCAAGTGTGAACCTCACGGGGTTTTCAGCTTCTCAGCGAAGGGGCTGCACGGCGCATCTTTTGACTTCACTTTGGAACTCTTCGGGTCCATAGTGCCTCAGGTGAGCTACTCACTAACATTTTGATGGGTCTATTATTGATCTTACACCATATCTTTTTGTTGAGCATTGTTGGGAGGGAGTCCCACATTGGCTAATTTAGGGAATGATCATGAGTTTATGCTCAAAGTGGACAGTATCATACCATTATGGAGAGTCGTGGTTCTTAGACTACTATATGGGATTTGAACTTTTTAACTTTTAAAAAAAGTGGCATCAATTCTGTGTTATTTTTAGAAGTCCTTTTGCTTAATGCTTATGCATCAGTTCTCTCTTTGCTTGATACAGGGCTGTAAAACTAAGGTTGGTTTGAGGAACATCATTTTCTCTGTACAAAAAGAACAAAAAGGGTGGTGGAAAAGACTGCTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGATTGGAGCAAATGGTGTGATGAGGATGAGTCAGAC

mRNA sequence

ATGAGTAGCCGTAACCCGGAGGTTCTATGGGCTCAGCGTTCTGATAAGCTTTATCTCACTGTTGCTTTACCTGATGCCAAAGATATTTCTGTCAAGTGTGAACCTCACGGGGTTTTCAGCTTCTCAGCGAAGGGGCTGCACGGCGCATCTTTTGACTTCACTTTGGAACTCTTCGGGTCCATAGTGCCTCAGGGCTGTAAAACTAAGGTTGGTTTGAGGAACATCATTTTCTCTGTACAAAAAGAACAAAAAGGGTGGTGGAAAAGACTGCTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGATTGGAGCAAATGGTGTGATGAGGATGAGTCAGAC

Coding sequence (CDS)

ATGAGTAGCCGTAACCCGGAGGTTCTATGGGCTCAGCGTTCTGATAAGCTTTATCTCACTGTTGCTTTACCTGATGCCAAAGATATTTCTGTCAAGTGTGAACCTCACGGGGTTTTCAGCTTCTCAGCGAAGGGGCTGCACGGCGCATCTTTTGACTTCACTTTGGAACTCTTCGGGTCCATAGTGCCTCAGGGCTGTAAAACTAAGGTTGGTTTGAGGAACATCATTTTCTCTGTACAAAAAGAACAAAAAGGGTGGTGGAAAAGACTGCTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGATTGGAGCAAATGGTGTGATGAGGATGAGTCAGAC

Protein sequence

MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD
Homology
[Close]
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-45
Identity = 83/111 (74.77%), Postives = 97/111 (87.39%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SRNPEVLWAQRSDK+YLTVALPDAKDISVKCEP G+FSFSA G  G  F+F+LEL+G I+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDE 114
            +  +  VGLRNIIFS+QKE++ WW RLLK+EEKPAPY+KVDW+KWCDEDE
Sbjct: 62  TE-YRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 111

[Close]
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-25
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSA-KGLHGASFDFTLELFGSI 62
           SR+PEV WAQR DK+Y+TV L DAKD  V  EP GVFSFSA  G  G  ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 63  VPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDE 114
             +  K  VG+R+I   V+K +  WWK+L++ ++K   ++KVDW KW DED+
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDD 113

[Close]
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-25
Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSA-KGLHGASFDFTLELFGSI 62
           SR+PEV WAQR DK+Y+TV L DAKD  V  EP GVFSFSA  G  G  ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 63  VPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDE 114
             +  K  VG+R+I   V+K +  WWK+L++ ++K   ++KVDW KW DED+
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDD 113

[Close]
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match: HACD3_DANRE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-14
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 

Query: 1   MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGA----SFDFTLE 60
           MS+  P V WAQR  ++YL V + DA+D+S+  E   +  F  +G HGA     ++F+LE
Sbjct: 1   MSALTPHVYWAQRHGEIYLRVEISDAQDLSIGVE-ENILQFRGQG-HGAKGENEYEFSLE 60

Query: 61  LFGSIVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
               + P+  K K   R +  +V+K+++ WW RL K E+KP  +L  D+ +W DE +++
Sbjct: 61  FLKPVKPE-VKHKSTQRQVNITVRKQEEVWWNRLTKQEKKPL-FLAPDFDRWLDESDAE 115

[Close]
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match: DAF41_CAEEL (Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-12
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGV-FSFSAKGLHGASFDFTLELFGSI 62
           ++ P VLWAQR   +YLT+ + +AK   +K E + + F  S+K      ++ TLE F  I
Sbjct: 2   AKQPTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKT---DKYEATLEFFDEI 61

Query: 63  VPQGCK-TKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
            P   K T    R +  +VQK+   WW RLL+ + K   +LKVD+ KW DEDE D
Sbjct: 62  DPASVKHTGSSTRVVEITVQKKTPAWWPRLLQNKGK-VHWLKVDFGKWKDEDEDD 112

[Close]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match: A0A0A0LBV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-57
Identity = 105/115 (91.30%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGS 60
           MSSRNPEVLWAQRSDK+YLTV+LPDAKDISVKCEPHG+FSFSAKGL G+SFDFTLELFGS
Sbjct: 1   MSSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           IVP+GCKTKV LRNII S+QKEQKGWWKRLLKTEEKPAPYLKVDW+KWCDEDESD
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match: A0A0D2TZA4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.9e-50
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT++LPDAKDISVKC+P G+FSFSA G+ G SFDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKT VGLRNII S+ KE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match: A0A0D2SC92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 8.9e-50
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT++LPDAKDISVKC+P G+FSFSA G+ G SFDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKT VGLRNII S+ KE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match: B9I621_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-49
Identity = 88/113 (77.88%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT+ALPDA+DISVKCE  G+FSFSA G+ G SFDF+LELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKTK GLRNII S+QKE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+++
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNE 117

[Close]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match: U5FU66_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.0e-49
Identity = 88/113 (77.88%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT+ALPDA+DISVKCE  G+FSFSA G+ G SFDF+LELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKTK GLRNII S+QKE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+++
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNE 117

[Close]
BLAST of Cp4.1LG08g06860 vs. TAIR10
Match: AT3G03773.2 (AT3G03773.2 HSP20-like chaperones superfamily protein)

HSP 1 Score: 181.0 bits (458), Expect = 4.1e-46
Identity = 82/110 (74.55%), Postives = 96/110 (87.27%), Query Frame = 1 

Query: 4   RNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIVP 63
           RNPEVLWAQRSDK+YLTVALPDAKDISVKCEP G+FSFSA G  G  F+F+LEL+G I+ 
Sbjct: 57  RNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMT 116

Query: 64  QGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDE 114
           +  +  VGLRNIIFS+QKE++ WW RLLK+EEKPAPY+KVDW+KWCDEDE
Sbjct: 117 E-YRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 165

[Close]
BLAST of Cp4.1LG08g06860 vs. TAIR10
Match: AT4G02450.1 (AT4G02450.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.7e-21
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAK-GLHGASFDFTLELFGSI 62
           SR+PEV WA+ ++K++LTV L D KD  V  +P GVF FSAK G     ++  LEL   +
Sbjct: 2   SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61

Query: 63  VPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDE 114
             +  K  +G R+I   ++K +   W +LL+  +KP  Y+KVDW KW DED+
Sbjct: 62  NVEESKINIGERSIFCIIEKAEPERWNKLLRV-KKPPHYVKVDWDKWVDEDD 112

[Close]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match: gi|449437769|ref|XP_004136663.1| (PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-57
Identity = 105/115 (91.30%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGS 60
           MSSRNPEVLWAQRSDK+YLTV+LPDAKDISVKCEPHG+FSFSAKGL G+SFDFTLELFGS
Sbjct: 1   MSSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           IVP+GCKTKV LRNII S+QKEQKGWWKRLLKTEEKPAPYLKVDW+KWCDEDESD
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match: gi|659085225|ref|XP_008443309.1| (PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 8.3e-57
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGS 60
           MSSRNPEVLWAQRSD++YLTV+LPDAKDISVKCEPHG+FSFSAKGL G+SFDFTLELFGS
Sbjct: 1   MSSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           IVP+GCKTKV LRNII S+QKEQKGWWKRLLKTEEKPAPYLKVDW+KWCDEDESD
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match: gi|659085223|ref|XP_008443308.1| (PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 8.3e-57
Identity = 104/115 (90.43%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MSSRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGS 60
           MSSRNPEVLWAQRSD++YLTV+LPDAKDISVKCEPHG+FSFSAKGL G+SFDFTLELFGS
Sbjct: 1   MSSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           IVP+GCKTKV LRNII S+QKEQKGWWKRLLKTEEKPAPYLKVDW+KWCDEDESD
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match: gi|763813891|gb|KJB80743.1| (hypothetical protein B456_013G113500 [Gossypium raimondii])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT++LPDAKDISVKC+P G+FSFSA G+ G SFDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKT VGLRNII S+ KE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match: gi|823264405|ref|XP_012464945.1| (PREDICTED: uncharacterized protein At3g03773 [Gossypium raimondii])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 3   SRNPEVLWAQRSDKLYLTVALPDAKDISVKCEPHGVFSFSAKGLHGASFDFTLELFGSIV 62
           SR+PEVLWAQRSDK+YLT++LPDAKDISVKC+P G+FSFSA G+ G SFDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 63  PQGCKTKVGLRNIIFSVQKEQKGWWKRLLKTEEKPAPYLKVDWSKWCDEDESD 116
           P+GCKT VGLRNII S+ KE+KGWWKRLLK+EEKPAPY+KVDW+KWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g06860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y3377_ARATH2.5e-4574.77Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1[more]
Y8359_ORYSI6.4e-2549.11Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 P... [more]
Y8359_ORYSJ6.4e-2549.11Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g035... [more]
HACD3_DANRE2.3e-1436.13Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 ... [more]
DAF41_CAEEL1.2e-1240.00Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1[more]
BLAST of Cp4.1LG08g06860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBV6_CUCSA2.6e-5791.30Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1[more]
A0A0D2TZA4_GOSRA8.9e-5078.76Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1[more]
A0A0D2SC92_GOSRA8.9e-5078.76Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1[more]
B9I621_POPTR2.0e-4977.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=2[more]
U5FU66_POPTR2.0e-4977.88Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=1[more]
BLAST of Cp4.1LG08g06860 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03773.24.1e-4674.55 HSP20-like chaperones superfamily protein[more]
AT4G02450.12.7e-2142.86 HSP20-like chaperones superfamily protein[more]
BLAST of Cp4.1LG08g06860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437769|ref|XP_004136663.1|3.7e-5791.30PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus][more]
gi|659085225|ref|XP_008443309.1|8.3e-5790.43PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo][more]
gi|659085223|ref|XP_008443308.1|8.3e-5790.43PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo][more]
gi|763813891|gb|KJB80743.1|1.3e-4978.76hypothetical protein B456_013G113500 [Gossypium raimondii][more]
gi|823264405|ref|XP_012464945.1|1.3e-4978.76PREDICTED: uncharacterized protein At3g03773 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0080037 negative regulation of cytokinin-activated signaling pathway
biological_process GO:0010628 positive regulation of gene expression
biological_process GO:2000012 regulation of auxin polar transport
biological_process GO:0010449 root meristem growth
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06860.1Cp4.1LG08g06860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 8..81
score: 2.
IPR007052CS domainPROFILEPS51203CScoord: 3..91
score: 15
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 4..115
score: 3.3
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 5..114
score: 8.37
NoneNo IPR availablePANTHERPTHR22932TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONEcoord: 1..113
score: 6.8
NoneNo IPR availablePANTHERPTHR22932:SF7SUBFAMILY NOT NAMEDcoord: 1..113
score: 6.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g06860CmaCh14G005400Cucurbita maxima (Rimu)cmacpeB295
Cp4.1LG08g06860CmoCh14G005420Cucurbita moschata (Rifu)cmocpeB258
Cp4.1LG08g06860Cla002919Watermelon (97103) v1cpewmB836
Cp4.1LG08g06860Csa3G822410Cucumber (Chinese Long) v2cpecuB853
Cp4.1LG08g06860MELO3C009797Melon (DHL92) v3.5.1cpemeB800
Cp4.1LG08g06860ClCG10G015780Watermelon (Charleston Gray)cpewcgB774
Cp4.1LG08g06860CSPI03G38240Wild cucumber (PI 183967)cpecpiB855
Cp4.1LG08g06860Lsi03G015620Bottle gourd (USVL1VR-Ls)cpelsiB710
Cp4.1LG08g06860MELO3C009797.2Melon (DHL92) v3.6.1cpemedB941
Cp4.1LG08g06860CsaV3_3G040660Cucumber (Chinese Long) v3cpecucB1050
Cp4.1LG08g06860Bhi11G002386Wax gourdcpewgoB1081
Cp4.1LG08g06860CsGy3G035730Cucumber (Gy14) v2cgybcpeB451
Cp4.1LG08g06860Carg26085Silver-seed gourdcarcpeB0445
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g06860Cp4.1LG03g08480Cucurbita pepo (Zucchini)cpecpeB486
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g06860Cucumber (Gy14) v1cgycpeB0899
Cp4.1LG08g06860Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g06860Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g06860Cucumber (Chinese Long) v3cpecucB1058