Cla002919 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002919
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	3-hydroxyacyl-CoA dehydratase 3 (AHRD V1 **-- F1L3L7_ASCSU); contains Interpro domain(s) IPR017447 CS
Location	Chr10 : 21807410 .. 21808153 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAGTTGGGGTTTTGATCGCCTTGATAGATGAAGGTAATAGTCAAGTAAGTAATCACCATAGTTTTTCTCGTGTATGCAGTAGTCGTAATCCGGAGGTTCTATGGGCCCAGCGTTCGGATAAGGTTTATCTGACCGTTTCTTTACCTGATGCCAAAGATATTTCTGTGAAGTGTGAACCTCATGGGTTATTTAGCTTCTCTGCAAAGGGACTGCAAGGCTCGTATTTTGACTTCACTTTGGAACTCTTTGGCTCCATTGTGCCTGAGGTGAGCTATTGACTAACTTTTGACGCACTTCTTTCTCTGGTTAGGCCAGGTTTAGACTGATATCGATGTGTTCATTATTGATCTTACAGTATATCTAGTGGTTTCTTATTCTCTTATGTGTGGAGGGAGGACTATATGAGCGGAAGTTGGGCATTGAACTTAAAATGTTTGAAAAAATGGCATCAATTCAGTGATTGTTTTTGGAAATCCTTTTGCTTATTAGCTTAGCTTGCTAAAAAAACCTAGGGTCATTACTTTATATTCATGCGGTAGCTCTCTCTTTGCTTGATACAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCATCCAAAAAGAACAGAAAGGTTGGTGGAAAAGGCTCTTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAGTCAGATTGTAAGTTCTTACTTGTATCATAG

mRNA sequence

ATGGATAGAGTTGGGGTTTTGATCGCCTTGATAGATGAAGGTAATAGTCAAGTAAGTAATCACCATAGTTTTTCTCGTGTATGCAGTAGTCGTAATCCGGAGGTTCTATGGGCCCAGCGTTCGGATAAGGTTTATCTGACCGTTTCTTTACCTGATGCCAAAGATATTTCTGTGAAGTGTGAACCTCATGGGTTATTTAGCTTCTCTGCAAAGGGACTGCAAGGCTCGTATTTTGACTTCACTTTGGAACTCTTTGGCTCCATTGTGCCTGAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCATCCAAAAAGAACAGAAAGGTTGGTGGAAAAGGCTCTTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAGTCAGATTGTAAGTTCTTACTTGTATCATAG

Coding sequence (CDS)

ATGGATAGAGTTGGGGTTTTGATCGCCTTGATAGATGAAGGTAATAGTCAAGTAAGTAATCACCATAGTTTTTCTCGTGTATGCAGTAGTCGTAATCCGGAGGTTCTATGGGCCCAGCGTTCGGATAAGGTTTATCTGACCGTTTCTTTACCTGATGCCAAAGATATTTCTGTGAAGTGTGAACCTCATGGGTTATTTAGCTTCTCTGCAAAGGGACTGCAAGGCTCGTATTTTGACTTCACTTTGGAACTCTTTGGCTCCATTGTGCCTGAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCATCCAAAAAGAACAGAAAGGTTGGTGGAAAAGGCTCTTGAAAACAGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAGTCAGATTGTAAGTTCTTACTTGTATCATAG

Protein sequence

MDRVGVLIALIDEGNSQVSNHHSFSRVCSSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIVPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDCKFLLVS

Homology

[Close]

BLAST of Cla002919 vs. Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.5e-46
Identity = 87/111 (78.38%), Postives = 95/111 (85.59%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SRNPEVLWAQRSDKVYLTV+LPDAKDISVKCEP GLFSFSA G QG  F+F+LEL+G I+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDE 141
            E  +  VGLRNII SIQKE++ WW RLLK+EEKPAPY+KVDWNKWCDEDE
Sbjct: 62  TE-YRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDE 111

[Close]

BLAST of Cla002919 vs. Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-27
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAK-GLQGSYFDFTLELFGSI 89
           SR+PEV WAQR DKVY+TV L DAKD  V  EP G+FSFSA  G  G+ ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 90  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDE 141
             E  K  VG+R+I C ++K +  WWK+L++ ++K   ++KVDW+KW DED+
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDD 113

[Close]

BLAST of Cla002919 vs. Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-27
Identity = 56/112 (50.00%), Postives = 75/112 (66.96%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAK-GLQGSYFDFTLELFGSI 89
           SR+PEV WAQR DKVY+TV L DAKD  V  EP G+FSFSA  G  G+ ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 90  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDE 141
             E  K  VG+R+I C ++K +  WWK+L++ ++K   ++KVDW+KW DED+
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDD 113

[Close]

BLAST of Cla002919 vs. Swiss-Prot
Match: HACD3_DANRE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 29  SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGL-FSFSAKGLQG-SYFDFTLELFG 88
           S+  P V WAQR  ++YL V + DA+D+S+  E + L F     G +G + ++F+LE   
Sbjct: 2   SALTPHVYWAQRHGEIYLRVEISDAQDLSIGVEENILQFRGQGHGAKGENEYEFSLEFLK 61

Query: 89  SIVPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
            + PE  K K   R +  +++K+++ WW RL K E+KP  +L  D+++W DE +++
Sbjct: 62  PVKPE-VKHKSTQRQVNITVRKQEEVWWNRLTKQEKKPL-FLAPDFDRWLDESDAE 115

[Close]

BLAST of Cla002919 vs. Swiss-Prot
Match: DAF41_CAEEL (Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.3e-13
Identity = 47/115 (40.87%), Postives = 63/115 (54.78%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGL-FSFSAKGLQGSYFDFTLELFGSI 89
           ++ P VLWAQR   VYLT+ + +AK   +K E + L F  S+K      ++ TLE F  I
Sbjct: 2   AKQPTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKT---DKYEATLEFFDEI 61

Query: 90  VPEGCK-TKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
            P   K T    R +  ++QK+   WW RLL+ + K   +LKVD+ KW DEDE D
Sbjct: 62  DPASVKHTGSSTRVVEITVQKKTPAWWPRLLQNKGK-VHWLKVDFGKWKDEDEDD 112

[Close]

BLAST of Cla002919 vs. TrEMBL
Match: A0A0A0LBV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 5.5e-60
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1


Query: 29  SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSI 88
           SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGS FDFTLELFGSI
Sbjct: 2   SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGSI 61

Query: 89  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           VPEGCKTKV LRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD
Sbjct: 62  VPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]

BLAST of Cla002919 vs. TrEMBL
Match: A0A0D2SC92_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.5e-53
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT+SLPDAKDISVKC+P GLFSFSA G+QG  FDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           PEGCKT VGLRNIICSI KE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]

BLAST of Cla002919 vs. TrEMBL
Match: B9I621_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 8.5e-53
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT++LPDA+DISVKCE  GLFSFSA G+QG  FDF+LELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDED--ESDCKF 146
           PEGCKTK GLRNIICSIQKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED  ES CKF
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNESACKF 122

[Close]

BLAST of Cla002919 vs. TrEMBL
Match: A0A0D2TZA4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.5e-53
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT+SLPDAKDISVKC+P GLFSFSA G+QG  FDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           PEGCKT VGLRNIICSI KE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]

BLAST of Cla002919 vs. TrEMBL
Match: A0A061F0T0_THECC (HSP20-like chaperones superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025857 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 98/120 (81.67%), Postives = 107/120 (89.17%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT+SLPDAKDISV C+P GLFSFSA G+QG  FDF+LELFG IV
Sbjct: 79  SRHPEVLWAQRSDKVYLTISLPDAKDISVICDPQGLFSFSAMGVQGESFDFSLELFGKIV 138

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDCKFLLVS 149
           PEGCKT VGLRNIICSIQKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDEDE +    L S
Sbjct: 139 PEGCKTNVGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDEEESNSDLAS 198

[Close]

BLAST of Cla002919 vs. NCBI nr
Match: gi|449437769|ref|XP_004136663.1| (PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 7.9e-60
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 1


Query: 29  SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSI 88
           SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGS FDFTLELFGSI
Sbjct: 2   SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGSI 61

Query: 89  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           VPEGCKTKV LRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD
Sbjct: 62  VPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]

BLAST of Cla002919 vs. NCBI nr
Match: gi|659085225|ref|XP_008443309.1| (PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.8e-59
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


Query: 29  SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSI 88
           SSRNPEVLWAQRSD+VYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGS FDFTLELFGSI
Sbjct: 2   SSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGSI 61

Query: 89  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           VPEGCKTKV LRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD
Sbjct: 62  VPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]

BLAST of Cla002919 vs. NCBI nr
Match: gi|659085223|ref|XP_008443308.1| (PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 1.8e-59
Identity = 111/114 (97.37%), Postives = 112/114 (98.25%), Query Frame = 1


Query: 29  SSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSI 88
           SSRNPEVLWAQRSD+VYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGS FDFTLELFGSI
Sbjct: 2   SSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGSI 61

Query: 89  VPEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           VPEGCKTKV LRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD
Sbjct: 62  VPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 115

[Close]

BLAST of Cla002919 vs. NCBI nr
Match: gi|763813891|gb|KJB80743.1| (hypothetical protein B456_013G113500 [Gossypium raimondii])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT+SLPDAKDISVKC+P GLFSFSA G+QG  FDF+LELFG IV
Sbjct: 2   SRHPEVLWAQRSDKVYLTISLPDAKDISVKCDPQGLFSFSAMGVQGESFDFSLELFGKIV 61

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESD 143
           PEGCKT VGLRNIICSI KE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED+ D
Sbjct: 62  PEGCKTNVGLRNIICSIMKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDED 114

[Close]

BLAST of Cla002919 vs. NCBI nr
Match: gi|566199681|ref|XP_002319181.2| (hypothetical protein POPTR_0013s05920g [Populus trichocarpa])

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = 1


Query: 30  SRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSYFDFTLELFGSIV 89
           SR+PEVLWAQRSDKVYLT++LPDA+DISVKCE  GLFSFSA G+QG  FDF+LELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 90  PEGCKTKVGLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDED--ESDCKF 146
           PEGCKTK GLRNIICSIQKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED  ES CKF
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNESACKF 122

The following BLAST results are available for this feature:

BLAST of Cla002919 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3377_ARATH	6.5e-46	78.38	Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1	[more]
Y8359_ORYSI	8.8e-27	50.00	Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 P...	[more]
Y8359_ORYSJ	8.8e-27	50.00	Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g035...	[more]
HACD3_DANRE	3.3e-13	35.34	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 ...	[more]
DAF41_CAEEL	7.3e-13	40.87	Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1	[more]

BLAST of Cla002919 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBV6_CUCSA	5.5e-60	98.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1	[more]
A0A0D2SC92_GOSRA	8.5e-53	84.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1	[more]
B9I621_POPTR	8.5e-53	83.05	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=2	[more]
A0A0D2TZA4_GOSRA	8.5e-53	84.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G113500 PE=4 SV=1	[more]
A0A061F0T0_THECC	1.9e-52	81.67	HSP20-like chaperones superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_02...	[more]

BLAST of Cla002919 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437769\|ref\|XP_004136663.1\|	7.9e-60	98.25	PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus]	[more]
gi\|659085225\|ref\|XP_008443309.1\|	1.8e-59	97.37	PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo]	[more]
gi\|659085223\|ref\|XP_008443308.1\|	1.8e-59	97.37	PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo]	[more]
gi\|763813891\|gb\|KJB80743.1\|	1.2e-52	84.96	hypothetical protein B456_013G113500 [Gossypium raimondii]	[more]
gi\|566199681\|ref\|XP_002319181.2\|	1.2e-52	83.05	hypothetical protein POPTR_0013s05920g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007052	CS_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080037	negative regulation of cytokinin-activated signaling pathway
biological_process	GO:0010628	positive regulation of gene expression
biological_process	GO:2000012	regulation of auxin polar transport
biological_process	GO:0010449	root meristem growth
biological_process	GO:0051131	chaperone-mediated protein complex assembly
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0051879	Hsp90 protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU31959	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla002919	Cla002919.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU31959	WMU31959	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007052	CS domain	PFAM	PF04969	CS	coord: 35..108 score: 3.
IPR007052	CS domain	PROFILE	PS51203	CS	coord: 30..118 score: 17
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 31..142 score: 6.2
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 32..141 score: 2.79
None	No IPR available	PANTHER	PTHR22932	TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE	coord: 29..140 score: 1.2
None	No IPR available	PANTHER	PTHR22932:SF7	SUBFAMILY NOT NAMED	coord: 29..140 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla002919	Cla97C10G198670	Watermelon (97103) v2	wmwmbB051
Cla002919	Csa3G822410	Cucumber (Chinese Long) v2	cuwmB198
Cla002919	MELO3C009797	Melon (DHL92) v3.5.1	mewmB346
Cla002919	ClCG10G015780	Watermelon (Charleston Gray)	wcgwmB051
Cla002919	CSPI03G38240	Wild cucumber (PI 183967)	cpiwmB198
Cla002919	CmaCh14G005400	Cucurbita maxima (Rimu)	cmawmB228
Cla002919	CmoCh14G005420	Cucurbita moschata (Rifu)	cmowmB214
Cla002919	Lsi03G015620	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla002919	Cp4.1LG08g06860	Cucurbita pepo (Zucchini)	cpewmB836
Cla002919	Cp4.1LG03g08480	Cucurbita pepo (Zucchini)	cpewmB597
Cla002919	CsGy3G035730	Cucumber (Gy14) v2	cgybwmB187
Cla002919	MELO3C009797.2	Melon (DHL92) v3.6.1	medwmB344
Cla002919	Carg03463	Silver-seed gourd	carwmB0237
Cla002919	Carg26085	Silver-seed gourd	carwmB0309
Cla002919	CsaV3_3G040660	Cucumber (Chinese Long) v3	cucwmB208
Cla002919	Bhi11G002386	Wax gourd	wgowmB021

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla002919	Cucumber (Gy14) v1	cgywmB609
Cla002919	Cucurbita maxima (Rimu)	cmawmB786
Cla002919	Cucurbita moschata (Rifu)	cmowmB780