CmoCh14G005420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G005420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Location	Cmo_Chr14 : 2747472 .. 2750476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAAAATTAGTTTAATCCAATCTTCTTCCGACCAAAAATGGGTTTAAGCGGTTACGCACAGAGCCCCAGAGTGGACTTCAATTTTTATATTCAGGAGTAGCCGGGAAGGGTTTGCTCTCGATTCTCCTCACCATTCTTTCCGATCAATCGCCACCTTTCCTCCCCAGAATGAGGTATTTTCTGTTAATTTTGCTGTTTCTTCACATGTAACACTACTTGTATTTGATCATCTAGCTTTTATTGTGGCGTTTTTAGCTATTGATTTTGAGTATTCGCTCCTTTTAACTTCCTGCTTTGTCTTGTTTCTTCCCGCTAAATCACGCCAGTTTTGTTCTTCTTCTTATGTGAAATTTTTTATTTCTGTAACTGGATTCTTTTGTGGGGATGAATTGGTTTTGTTTACGTTTCTGGATCGATGCTTGTGGAAGATGTTGTCTGTGATCTGTTTGAATGAGTTTAAGGCTGGTAAATGTAGGTCATAATGGATAGAGTTGGGGTTTTGATCGCCTTGATAGATGAAGGCAGTTGTCAAGTCATGGCGATAATTTTTTTTCTCGTGTATGCAGTAGTCGTAATCCGGAGGTTCTATGGGCTCAGCGTTCGGATAAGGTTTATCTGACCGTTGCTTTACCTGATGCCAAAGATATTTCTGTTAAGTGTGAACCGCATGGGTTATTTAGCTTCTCTGCCAAGGGACTGCAAGGCGCATCTTTTGACTTCAGTTTGGAACTCTTTGGGTCCATAGTGCCTGAGGTGAGCTATTGTATAACTTTTGGTGCACTTTTTTCTTCTGTTTAGACCATGCTTAGAATGATCTTGATATGTCCATTACTGAACTTATATCATATCTAGTGGTTTCTTATTCTCTTATGTGTTAAGGACCACATGAGCGGAAGTTGGGACTTGGGAGTTGTTGACACTTAAAATGTTTGGGAAAATGGCATCAATGCTGTGATTGTTTTCGAAGATCTTTTGCTTATTAGCTTAGCTCGCAAAAAAAATTTAGGATCGTTACTGAAAATCAGAGGAAGGAGTGGAGAAAATTGTAAGAGAAGGAGAGTATTTTCTTATATTTCTCGGTGTATTGAAGGAACTAAAAAGCGGCAAGCAGCAAATAGCTATAGCTGCTAGCAAACCACCACACATGTAGCATACAGTCATTGATTTTGACATATAACAGCAAGAATAACAATCAGATTTAAAAATTAAACGAAACAAAGTAGATTTGAAACTTAATTAACACTCTTAATCTGATGGCTTAACATTTACTTTATATTTATCCAATATCCCTCTCTTTGCTTGATACAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCGTCCAAAAAGAACAGAAAGGTTGGTGGAAACGGCTCTTGAAAACGGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAATCAGACTGTAAGTTCTTTCTTGTAACATAGATGTACTGTTGGTATATAAAATGCAAACACCCTAGGAATTGTAGAGGTAATATACAAAAAGGAGAGAACCTCTGTCGTAAAGGGAGTTACATTAACAACTTTTCAATTAACCAAAATGTCATCCGTGTATAGTTTGTGAAATGACAGAAGAAGTTGAACCCATGGATACCGTGTTTCTTTCTTGAAAGGATGGAACACCCAATATAGATAGGGATTTATCCATATTGAGTTTCTCCTTTTGCTATTCAACAATTTGAGTTTTCCAACCTGCACGTTTTTTTTAATATTGCCGACGTTTCTCTTCCTTATTTGTCACTACTTTCTTTCAAGTTTAACTACTTGAATTTCCCAACTTTCTGTAGCAGATACCCTGCGTTGAAAACTATTATAGGGACCCTGAAATAATTTTATGATGTTGGTTTATGATCAAAGTACAAGGATCAGTAGGATACTAGTGAGAATCTTAGCCATTGCTATATGGCACATTGATAATGACTTAAGATGTTGGTTTGGGTACGCGTTACTTAGGGAGAAAGATCGCCTTCCTGAAAAGCTCTAGTATATTTTTCCTCTTCTATATTACCATACAATTTCAGTCTTATTTTCTCCCAACCTTAGGATTGGGATCCTTATCAGATTTGGCTCTGCTTCTATTTACATAAATATGAAACTGTCATCCCATGCTATTCCATTACCATTTGGCTATATGCTATTTGTGAATTGTAACTTAGCACTTGCAGCTTCGAAATTCTTAGAAGTAGAACTTTAATCTTGCATTCCCTATTTGTAATATTTGTTCTAACAATATAATTTATTTTGCAGCCGCTTTAACTTCTGATGACGACCTTGCAGTAAGTTGATTCCATTTATTTCCTATATGCTCTAATTTAGTCAAAAGTTCAAGTTGTCTTATATAAGCTATGTAAATAATTTTCTATAGGATATGGGTCTAGATGATGGAAGCGGCGAGGATGGAGGAATGCTCTGTGAGTCCAATTTAATTTTTTACCATATGTTGTTTCTTATGAATCTTATGGTCCTTGGAATACCACTTGGGGGAAAAAAAACTTTTAAAATAAAATTACTCTTCTATATGCACCTTTGAAAAAATTAATAATTTGTTTCTTAATCTTAATAAATAAAAAGCACATTAAAGAGTACTAATGGGTACTAATGGTTTACCGCTTCTTATTGTCTCCTTGACAGATCTCCCCGACTTGAAAAAAGTAGGAGGAATCTAGCAACTACGTGAAGGGGAAGTTTGTATAGAAGTATCCTAGAACCATTAGATTGACCACTGAAAGTTGAATACTGTTTTTATTCCATGAATTTTGTATCAAGTCTTGACTAGTGCTTATGAAATTGTCTGAACTTGACATTCTTGATCTGCACTTACACATTTGTCTGCCCTCTCATTAGCTGATCTATTTAGATTTTGCAGTCTCATTGTTCGTCCATTTGTGTTTGCGTTCGCTTCATTAGCTGATCTGTTCAGATTTTGCAGTCTCATTATTCGTCC

mRNA sequence

CGAAAAATTAGTTTAATCCAATCTTCTTCCGACCAAAAATGGGTTTAAGCGGTTACGCACAGAGCCCCAGAGTGGACTTCAATTTTTATATTCAGGAGTAGCCGGGAAGGGTTTGCTCTCGATTCTCCTCACCATTCTTTCCGATCAATCGCCACCTTTCCTCCCCAGAATGAGTAGTCGTAATCCGGAGGTTCTATGGGCTCAGCGTTCGGATAAGGTTTATCTGACCGTTGCTTTACCTGATGCCAAAGATATTTCTGTTAAGTGTGAACCGCATGGGTTATTTAGCTTCTCTGCCAAGGGACTGCAAGGCGCATCTTTTGACTTCAGTTTGGAACTCTTTGGGTCCATAGTGCCTGAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCGTCCAAAAAGAACAGAAAGGTTGGTGGAAACGGCTCTTGAAAACGGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAATCAGACTCCGCTTTAACTTCTGATGACGACCTTGCAGATATGGGTCTAGATGATGGAAGCGGCGAGGATGGAGGAATGCTCTATCTCCCCGACTTGAAAAAAGTAGGAGGAATCTAGCAACTACGTGAAGGGGAAGTTTGTATAGAAGTATCCTAGAACCATTAGATTGACCACTGAAAGTTGAATACTGTTTTTATTCCATGAATTTTGTATCAAGTCTTGACTAGTGCTTATGAAATTGTCTGAACTTGACATTCTTGATCTGCACTTACACATTTGTCTGCCCTCTCATTAGCTGATCTATTTAGATTTTGCAGTCTCATTGTTCGTCCATTTGTGTTTGCGTTCGCTTCATTAGCTGATCTGTTCAGATTTTGCAGTCTCATTATTCGTCC

Coding sequence (CDS)

ATGAGTAGTCGTAATCCGGAGGTTCTATGGGCTCAGCGTTCGGATAAGGTTTATCTGACCGTTGCTTTACCTGATGCCAAAGATATTTCTGTTAAGTGTGAACCGCATGGGTTATTTAGCTTCTCTGCCAAGGGACTGCAAGGCGCATCTTTTGACTTCAGTTTGGAACTCTTTGGGTCCATAGTGCCTGAGGGCTGTAAAACTAAGGTTGGCTTGAGGAACATAATTTGCTCCGTCCAAAAAGAACAGAAAGGTTGGTGGAAACGGCTCTTGAAAACGGAAGAAAAACCTGCTCCATACTTGAAGGTTGACTGGAACAAATGGTGTGATGAGGATGAATCAGACTCCGCTTTAACTTCTGATGACGACCTTGCAGATATGGGTCTAGATGATGGAAGCGGCGAGGATGGAGGAATGCTCTATCTCCCCGACTTGAAAAAAGTAGGAGGAATCTAG

Homology

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BLAST of CmoCh14G005420 vs. Swiss-Prot
Match: Y3377_ARATH (Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 5.0e-54
Identity = 104/146 (71.23%), Postives = 119/146 (81.51%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEP GLFSFSA G QG  F+FSLEL+G I+
Sbjct: 2   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIM 61

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDES-DSALTSD 122
            E  +  VGLRNII S+QKE++ WW RLLK+EEKPAPY+KVDWNKWCDEDE  +S   SD
Sbjct: 62  TE-YRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASD 121

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKK 148
           D+ A +  D  S +D G+LYLPDL+K
Sbjct: 122 DESAFVNQDSESSDDDGLLYLPDLEK 146

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BLAST of CmoCh14G005420 vs. Swiss-Prot
Match: Y8359_ORYSI (Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 PE=1 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-28
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAK-GLQGASFDFSLELFGSI 62
           SR+PEV WAQR DKVY+TV L DAKD  V  EP G+FSFSA  G  G  ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 63  VPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTSD 122
             E  K  VG+R+I C V+K +  WWK+L++ ++K   ++KVDW+KW DED+  + +  D
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDGADVNVD 121

Query: 123 D-DLADMGLDDGSGEDGGM 140
             D ++ G   G G  GGM
Sbjct: 122 GMDFSNFGGMGGMGGMGGM 140

[Close]

BLAST of CmoCh14G005420 vs. Swiss-Prot
Match: Y8359_ORYSJ (Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g0359500 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-28
Identity = 65/139 (46.76%), Postives = 88/139 (63.31%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAK-GLQGASFDFSLELFGSI 62
           SR+PEV WAQR DKVY+TV L DAKD  V  EP G+FSFSA  G  G  ++  LEL   +
Sbjct: 2   SRHPEVKWAQRIDKVYITVQLADAKDAKVNLEPEGVFSFSATAGTDGNLYESKLELNDKV 61

Query: 63  VPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTSD 122
             E  K  VG+R+I C V+K +  WWK+L++ ++K   ++KVDW+KW DED+  + +  D
Sbjct: 62  NVEESKISVGVRSIFCIVEKAEAKWWKKLVRDDQKAPHFVKVDWDKWVDEDDDGADVNVD 121

Query: 123 D-DLADMGLDDGSGEDGGM 140
             D ++ G   G G  GGM
Sbjct: 122 GMDFSNFGGMGGMGGMGGM 140

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BLAST of CmoCh14G005420 vs. Swiss-Prot
Match: HACD3_DANRE (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 45/125 (36.00%), Postives = 74/125 (59.20%), Query Frame = 1


Query: 1   MSSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGL-FSFSAKGLQGAS-FDFSLELF 60
           MS+  P V WAQR  ++YL V + DA+D+S+  E + L F     G +G + ++FSLE  
Sbjct: 1   MSALTPHVYWAQRHGEIYLRVEISDAQDLSIGVEENILQFRGQGHGAKGENEYEFSLEFL 60

Query: 61  GSIVPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSAL 120
             + PE  K K   R +  +V+K+++ WW RL K E+KP  +L  D+++W DE +++  L
Sbjct: 61  KPVKPE-VKHKSTQRQVNITVRKQEEVWWNRLTKQEKKPL-FLAPDFDRWLDESDAEMEL 120

Query: 121 TSDDD 124
              ++
Sbjct: 121 REKEE 123

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BLAST of CmoCh14G005420 vs. Swiss-Prot
Match: DAF41_CAEEL (Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 55/153 (35.95%), Postives = 77/153 (50.33%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGAS----FDFSLELF 62
           ++ P VLWAQR   VYLT+ + +AK   +K E + L        QG+S    ++ +LE F
Sbjct: 2   AKQPTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLH------FQGSSKTDKYEATLEFF 61

Query: 63  GSIVPEGCK-TKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSA 122
             I P   K T    R +  +VQK+   WW RLL+ + K   +LKVD+ KW DEDE    
Sbjct: 62  DEIDPASVKHTGSSTRVVEITVQKKTPAWWPRLLQNKGK-VHWLKVDFGKWKDEDE---- 121

Query: 123 LTSDDDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
              DD+  D G   G G   G      + ++GG
Sbjct: 122 ---DDEAEDAGAGIGGGMANGFDLNQYMSQMGG 140

[Close]

BLAST of CmoCh14G005420 vs. TrEMBL
Match: A0A0A0LBV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.3e-76
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 1   MSSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGS 60
           MSSRNPEVLWAQRSDKVYLTV+LPDAKDISVKCEPHGLFSFSAKGLQG+SFDF+LELFGS
Sbjct: 1   MSSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120
           IVPEGCKTKV LRNIICS+QKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120

Query: 121 DDDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           DD+L  MG DDGSGEDGGMLYLPDL+K  G
Sbjct: 121 DDELEYMGQDDGSGEDGGMLYLPDLEKARG 150

[Close]

BLAST of CmoCh14G005420 vs. TrEMBL
Match: U5FU66_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.5e-62
Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLT+ALPDA+DISVKCE  GLFSFSA G+QG SFDFSLELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSAL-TSD 122
           PEGCKTK GLRNIICS+QKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED+++SA   SD
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNESASDASD 124

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           D+ A  G DD S +D GMLYLPDL+K  G
Sbjct: 125 DNNAAHGEDDESSDDDGMLYLPDLEKARG 153

[Close]

BLAST of CmoCh14G005420 vs. TrEMBL
Match: A0A061F7N0_THECC (HSP20-like chaperones superfamily protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_025857 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-61
Identity = 118/151 (78.15%), Postives = 132/151 (87.42%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLT++LPDAKDISV C+P GLFSFSA G+QG SFDFSLELFG IV
Sbjct: 55  SRHPEVLWAQRSDKVYLTISLPDAKDISVICDPQGLFSFSAMGVQGESFDFSLELFGKIV 114

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDED--ESDSALTS 122
           PEGCKT VGLRNIICS+QKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED  ES+S L S
Sbjct: 115 PEGCKTNVGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDEEESNSDLAS 174

Query: 123 DDDLA-DMGLDDGSGEDGGMLYLPDLKKVGG 151
           DDD A  +G DD S +D G+LYLPDL+K  G
Sbjct: 175 DDDDAMYVGQDDESSDDEGLLYLPDLEKARG 205

[Close]

BLAST of CmoCh14G005420 vs. TrEMBL
Match: I3SP93_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.1e-61
Identity = 116/150 (77.33%), Postives = 129/150 (86.00%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLTVALPDAKD+SVKCEPHGLFSFSA G+Q   + FSLEL+GSI 
Sbjct: 2   SRHPEVLWAQRSDKVYLTVALPDAKDVSVKCEPHGLFSFSASGVQHEPYSFSLELYGSIE 61

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSA--LTS 122
           PEGCK K GLRNI+CSVQK QKGWWKRLLK+E+KPAPYLKVDWN+WCDED+ +SA  L S
Sbjct: 62  PEGCKIKAGLRNILCSVQKGQKGWWKRLLKSEDKPAPYLKVDWNRWCDEDDEESASDLAS 121

Query: 123 DDDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           DDD A  G DDGS +D GMLYLPDL+K  G
Sbjct: 122 DDD-APFGQDDGSSDDDGMLYLPDLEKARG 150

[Close]

BLAST of CmoCh14G005420 vs. TrEMBL
Match: A0A0S3T8X4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G096500 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.6e-61
Identity = 115/149 (77.18%), Postives = 128/149 (85.91%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLTVALPDAKD+SVKCEP G FSFSA G+Q  S+ FSLEL+GSI 
Sbjct: 2   SRHPEVLWAQRSDKVYLTVALPDAKDVSVKCEPQGWFSFSASGVQDESYSFSLELYGSIE 61

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDED-ESDSALTSD 122
           PEGCKTK GLRNI+CS+QK +KGWWKRLLK+EEKPAPYLKVDWNKWCDED ES S L SD
Sbjct: 62  PEGCKTKSGLRNILCSIQKGEKGWWKRLLKSEEKPAPYLKVDWNKWCDEDEESTSELVSD 121

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           DD   +G D+GS +D GMLYLPDL+K  G
Sbjct: 122 DDSRFVGQDEGSSDDDGMLYLPDLEKARG 150

[Close]

BLAST of CmoCh14G005420 vs. TAIR10
Match: AT3G03773.2 (AT3G03773.2 HSP20-like chaperones superfamily protein)

HSP 1 Score: 210.3 bits (534), Expect = 8.3e-55
Identity = 103/145 (71.03%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 4   RNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIVP 63
           RNPEVLWAQRSDKVYLTVALPDAKDISVKCEP GLFSFSA G QG  F+FSLEL+G I+ 
Sbjct: 57  RNPEVLWAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMT 116

Query: 64  EGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDES-DSALTSDD 123
           E  +  VGLRNII S+QKE++ WW RLLK+EEKPAPY+KVDWNKWCDEDE  +S   SDD
Sbjct: 117 E-YRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEEVNSETASDD 176

Query: 124 DLADMGLDDGSGEDGGMLYLPDLKK 148
           + A +  D  S +D G+LYLPDL+K
Sbjct: 177 ESAFVNQDSESSDDDGLLYLPDLEK 200

[Close]

BLAST of CmoCh14G005420 vs. TAIR10
Match: AT4G02450.1 (AT4G02450.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 117.1 bits (292), Expect = 9.5e-27
Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAK-GLQGASFDFSLELFGSI 62
           SR+PEV WA+ ++K++LTV L D KD  V  +P G+F FSAK G +   ++  LEL   +
Sbjct: 2   SRHPEVKWAETTEKIFLTVVLADTKDTKVNLDPEGVFDFSAKVGPENHVYELKLELADKV 61

Query: 63  VPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTSD 122
             E  K  +G R+I C ++K +   W +LL+  +KP  Y+KVDW+KW DED+  SA  +D
Sbjct: 62  NVEESKINIGERSIFCIIEKAEPERWNKLLRV-KKPPHYVKVDWDKWVDEDDEGSAGAAD 121

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKKVGGI 152
            D+A M    G G  GGM  +  +  +GG+
Sbjct: 122 MDMAGMEGMGGMGGMGGMGGMGGMGGMGGM 150

[Close]

BLAST of CmoCh14G005420 vs. NCBI nr
Match: gi|449437769|ref|XP_004136663.1| (PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 138/150 (92.00%), Postives = 144/150 (96.00%), Query Frame = 1


Query: 1   MSSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGS 60
           MSSRNPEVLWAQRSDKVYLTV+LPDAKDISVKCEPHGLFSFSAKGLQG+SFDF+LELFGS
Sbjct: 1   MSSRNPEVLWAQRSDKVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120
           IVPEGCKTKV LRNIICS+QKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120

Query: 121 DDDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           DD+L  MG DDGSGEDGGMLYLPDL+K  G
Sbjct: 121 DDELEYMGQDDGSGEDGGMLYLPDLEKARG 150

[Close]

BLAST of CmoCh14G005420 vs. NCBI nr
Match: gi|659085223|ref|XP_008443308.1| (PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 2.6e-74
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 1


Query: 1   MSSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGS 60
           MSSRNPEVLWAQRSD+VYLTV+LPDAKDISVKCEPHGLFSFSAKGLQG+SFDF+LELFGS
Sbjct: 1   MSSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120
           IVPEGCKTKV LRNIICS+QKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120

Query: 121 DDDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           DD+L  MG DDGS EDGGMLYLPDL+K  G
Sbjct: 121 DDELEYMGQDDGSVEDGGMLYLPDLEKARG 150

[Close]

BLAST of CmoCh14G005420 vs. NCBI nr
Match: gi|659085225|ref|XP_008443309.1| (PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 123/134 (91.79%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 1   MSSRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGS 60
           MSSRNPEVLWAQRSD+VYLTV+LPDAKDISVKCEPHGLFSFSAKGLQG+SFDF+LELFGS
Sbjct: 1   MSSRNPEVLWAQRSDRVYLTVSLPDAKDISVKCEPHGLFSFSAKGLQGSSFDFTLELFGS 60

Query: 61  IVPEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120
           IVPEGCKTKV LRNIICS+QKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS
Sbjct: 61  IVPEGCKTKVSLRNIICSIQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSALTS 120

Query: 121 DDDLADMGLDDGSG 135
           DD+L  MG DDG G
Sbjct: 121 DDELEYMGQDDGRG 134

[Close]

BLAST of CmoCh14G005420 vs. NCBI nr
Match: gi|566199683|ref|XP_006375912.1| (hypothetical protein POPTR_0013s05920g [Populus trichocarpa])

HSP 1 Score: 245.7 bits (626), Expect = 5.0e-62
Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLT+ALPDA+DISVKCE  GLFSFSA G+QG SFDFSLELFG++V
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEAEGLFSFSAVGVQGESFDFSLELFGNVV 64

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSAL-TSD 122
           PEGCKTK GLRNIICS+QKE+KGWWKRLLK+EEKPAPY+KVDWNKWCDED+++SA   SD
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWKRLLKSEEKPAPYIKVDWNKWCDEDDNESASDASD 124

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           D+ A  G DD S +D GMLYLPDL+K  G
Sbjct: 125 DNNAAHGEDDESSDDDGMLYLPDLEKARG 153

[Close]

BLAST of CmoCh14G005420 vs. NCBI nr
Match: gi|743873113|ref|XP_011034312.1| (PREDICTED: uncharacterized protein At3g03773-like [Populus euphratica])

HSP 1 Score: 243.0 bits (619), Expect = 3.3e-61
Identity = 115/149 (77.18%), Postives = 132/149 (88.59%), Query Frame = 1


Query: 3   SRNPEVLWAQRSDKVYLTVALPDAKDISVKCEPHGLFSFSAKGLQGASFDFSLELFGSIV 62
           SR+PEVLWAQRSDKVYLT+ALPDA+DISVKCE  GLFSFSA G+QG SFDFSL+LFG+IV
Sbjct: 5   SRHPEVLWAQRSDKVYLTIALPDARDISVKCEGEGLFSFSAVGVQGESFDFSLKLFGNIV 64

Query: 63  PEGCKTKVGLRNIICSVQKEQKGWWKRLLKTEEKPAPYLKVDWNKWCDEDESDSAL-TSD 122
           PEGCKTK GLRNIICS+QKE+KGWW+RLLK+EEKPAPY+KVDWNKWCDED+++SA   SD
Sbjct: 65  PEGCKTKAGLRNIICSIQKEEKGWWRRLLKSEEKPAPYIKVDWNKWCDEDDNESASDASD 124

Query: 123 DDLADMGLDDGSGEDGGMLYLPDLKKVGG 151
           D+ A  G DD S +D GMLYLPDL+K  G
Sbjct: 125 DNNAAHGEDDESSDDDGMLYLPDLEKARG 153

The following BLAST results are available for this feature:

BLAST of CmoCh14G005420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3377_ARATH	5.0e-54	71.23	Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1	[more]
Y8359_ORYSI	8.1e-28	46.76	Uncharacterized protein OsI_027940 OS=Oryza sativa subsp. indica GN=OsI_027940 P...	[more]
Y8359_ORYSJ	8.1e-28	46.76	Uncharacterized protein Os08g0359500 OS=Oryza sativa subsp. japonica GN=Os08g035...	[more]
HACD3_DANRE	1.7e-14	36.00	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Danio rerio GN=hacd3 PE=2 ...	[more]
DAF41_CAEEL	3.3e-13	35.95	Co-chaperone protein daf-41 OS=Caenorhabditis elegans GN=daf-41 PE=2 SV=1	[more]

BLAST of CmoCh14G005420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBV6_CUCSA	7.3e-76	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822410 PE=4 SV=1	[more]
U5FU66_POPTR	3.5e-62	77.85	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s05920g PE=4 SV=1	[more]
A0A061F7N0_THECC	3.0e-61	78.15	HSP20-like chaperones superfamily protein isoform 2 (Fragment) OS=Theobroma caca...	[more]
I3SP93_LOTJA	5.1e-61	77.33	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A0S3T8X4_PHAAN	6.6e-61	77.18	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G096500 PE=...	[more]

BLAST of CmoCh14G005420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03773.2	8.3e-55	71.03	HSP20-like chaperones superfamily protein	[more]
AT4G02450.1	9.5e-27	41.33	HSP20-like chaperones superfamily protein	[more]

BLAST of CmoCh14G005420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437769\|ref\|XP_004136663.1\|	1.0e-75	92.00	PREDICTED: uncharacterized protein At3g03773 [Cucumis sativus]	[more]
gi\|659085223\|ref\|XP_008443308.1\|	2.6e-74	90.67	PREDICTED: uncharacterized protein At3g03773 isoform X1 [Cucumis melo]	[more]
gi\|659085225\|ref\|XP_008443309.1\|	1.5e-66	91.79	PREDICTED: uncharacterized protein At3g03773 isoform X2 [Cucumis melo]	[more]
gi\|566199683\|ref\|XP_006375912.1\|	5.0e-62	77.85	hypothetical protein POPTR_0013s05920g [Populus trichocarpa]	[more]
gi\|743873113\|ref\|XP_011034312.1\|	3.3e-61	77.18	PREDICTED: uncharacterized protein At3g03773-like [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007052	CS_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080037	negative regulation of cytokinin-activated signaling pathway
biological_process	GO:0010628	positive regulation of gene expression
biological_process	GO:2000012	regulation of auxin polar transport
biological_process	GO:0010449	root meristem growth
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005420.1	CmoCh14G005420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007052	CS domain	PFAM	PF04969	CS	coord: 8..81 score: 9.
IPR007052	CS domain	PROFILE	PS51203	CS	coord: 3..91 score: 16
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 4..122 score: 5.3
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 5..127 score: 1.34
None	No IPR available	PANTHER	PTHR22932	TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE	coord: 1..151 score: 1.3
None	No IPR available	PANTHER	PTHR22932:SF7	SUBFAMILY NOT NAMED	coord: 1..151 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G005420	CmaCh14G005400	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G005420	Cla002919	Watermelon (97103) v1	cmowmB214
CmoCh14G005420	Csa3G822410	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G005420	MELO3C009797	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G005420	ClCG10G015780	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G005420	CSPI03G38240	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G005420	Lsi03G015620	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G005420	Cp4.1LG03g08480	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G005420	Cp4.1LG08g06860	Cucurbita pepo (Zucchini)	cmocpeB258
CmoCh14G005420	MELO3C009797.2	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G005420	CsaV3_3G040660	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G005420	Cla97C10G198670	Watermelon (97103) v2	cmowmbB230
CmoCh14G005420	Bhi11G002386	Wax gourd	cmowgoB0281
CmoCh14G005420	CsGy3G035730	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G005420	Carg03463	Silver-seed gourd	carcmoB0347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G005420	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh14G005420	Cucumber (Gy14) v1	cgycmoB0926
CmoCh14G005420	Cucurbita maxima (Rimu)	cmacmoB802