Cp4.1LG08g06610 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g06610
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosynthetic NDH subcomplex B 2
Location	Cp4.1LG08 : 171661 .. 176004 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGATGGCGGCAGAGAGGGAGAATTAAAGAAAAGCCGTTATGAGTGGATAAAGGGACCAAAATAGAAATCCAAAGGAAAACATTGGTGGGAGAGTAAGGTAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTATATCTAGCATATATCTAATGTATCTTTGACCAAATTTTGCCTGGTTCTCTTTGGGCTTTGCTTCTTCATTTATTTACGATCTTTGCTGCGTCAAGCGTTGAGTGAATTCATTTGTCTTGTTTTTCTCCTAATTATGCTGTGGGACTGCAGGAGCAGAAGCTACATTAATGATTTAAGTTAGTGTACCCAGTTGTCTACCTGGAATCTGAGCTCTATTTTGTATTTGATTTGGTATGATATTGTTTACTTTCAACTTCAACATAAACTCTCGTAACTTTGTTTTTAGTTTCCCCAAAAGGCCTCGTATCGATGGAGATAGTGTTCCTTACTTATAAACCCATGATCTTCCTCTTAATTTGCTAAGGTGGGACTATTCCTTTCAACTATTCTCAACAGTCCTCCCCTCGAACAAAGTGTACCATAGAGCCTCTCCTGTGTCCTCCGCTCGAACAAAGTGTACCATAGAGCCTCCCCTGAGACCTATGGAGCTCTCAAACAGTTTCCTTAATCGAGGCTCAACTCCTTTCTCTGGAGTCCTCGAATAAAGTACACCATTTGTTCAACACATCGAGGCTCATTATTTCTTTGTTTGACATTCAAGGATTCTATTGACATAATTAAATGAAGGGCATGACTCTGGTTCCATGTTATGAATCACAAATCTCCACAATGATATGATATTGTTCACTTTGAGCCTAAGCTCTTATGATTTTACTTTTAGTTTCCTAAAAGGCCTCGTGCTCTTATGATTTTACTTTTAGTTTCCTAAAAGGCCTCGTACCAATGGAGATAGTGTTCCTTACTTTATAAACTTATGATCTTCCTCTTAATTAGCTAATGTGAGAATACTTCTTTTAACGATCCTCAACTGATCTAACAAATCCTCCCTTCAAATGAGTATTCATTTGTCCACTCTCTATCACGATTCTACTTTTTTCGTGATCCCTGGTTAAATGATTAGATGTGTGAGAGGTTTAAGAACTATATTTCATGAATTTTAGGAGGTAGACAAGACTTGAATTGCATTGGATTGTTATTGGGATGCAGCTACGTTGTGGCTATCATATTAAATAATTTCTCCCTTCTGTCATATTATGTTTGGAACGTGATTTTGAGCTTGCGTAGTTAATGTTTTCATCTCTATATTGGTAATGATATCAAATAATTTTTCCCTTCTGTCATATTATGTTTGGAACGTGATTTTGAGCTTGCGTAGTTAATGTTTTCATCTCTATATTGGTAATGATATCATCATTATACTAATTAAGATTTTGTTCTTCCTTCTCAACTCATAGTTTTCCTCACTCTAGTGCTAAGTAATGTAGGGTTGAAAACATGTCATCTTTTGTTAAGACAGTGTACCAAGTTATGCAAGTTGAATGCCTTTGTATGTGGAGGTTTCATTTTGTTTTCCCTGTCATGGTTTTGTTGCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTCAAGAACACGGGACCGAAACTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCAGCTCTGAGCCTCAAGAAAAGGTAGGTTCATGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAAAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGTAAAGAAATAGCTACTGTATTGCATCACACATCTTTGAACATGTTTTTGGCATCGCTGAAGTACTTTCTATTCAAGAACTTTACTTCTTACTTATCTTAAGAACTTTTTACTTCTTAATCTCTTTTGGCGAAGTACTTATAAGGGAAATATTTTGACAAAAGCACTTGTGTATTTCAGGGACGAGAGCTGTTCTTCAGGGTCATAAGAATGGGGTTCGAAGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCGAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAATGTATTATTTCCTCTTTAATCTTCATATTTTTACCCAAATTCATTATCAAATGAACACCTGATCAAGTACAAGTAGCAGCTAAAATATTTACATATGCTCCTCTATTTTCGAGAACTTGGTGTACGAGCTTCTTTGTTTATACAATAAATCCACCGACTTCCCAATATGATATTACTAATCAGGATCAACAAGTTGGCTCTGTTTTGTTGTTGTCACGTTCTATTATAATATAGAGTCACTTGAATTTGTCAATCTCAACCTCCCGTGACTACAATGGCTTCAGAATCAGGCCCTGCTGTGGCTGCTCTGCCGCTGCAGGATCGAGTGGTCATTGTAACCGGTGCCTCTCGGGGCATCGGCCGAGCCATCGCCTTTCACCTCGCTGCTCTTGGCGCCCGTATTGTTGTCAATTATGTGTCATCCTCGGCCAAAGCTGACCGTGTTGCTGCTGAGATCAATTCATCCTCGGCCACCGGGAGTGGCCTACGAGCCATTGCTTGGCGGGCAGATGTGTCCGATCCAGAGCAAGTGAAGTCGCTGTTTGACACAGCCGAGCAGAGATTTGGCGCCCAAGTCCATATCATGGTTAATTGTGCTGGAATTTCTGATCCTACTTACCCTTATATCGCTGATACTTCACTGGAGATTTTTGACCAGATTTTCAGGTCCCTCTTCTACCTCTTTTATGAAATTTCATAGGAAAAATCTTTAAATCTCTTATTAATTCCATGGGAGGAGTTTTTAGTTAAATCACCACTAGACTCGAAGCTTTAGAAGATAAGTTGTAAACTTGGGGTAAGTTCTATAGGATTCAACAAGCAGTTATGCATATGAATCAGGGCGATTGTGTTTTTCAGTGTGAACACGAGGGGAAGTTTCCTGTGCTGCAGAGAAGCAGCAAACAGAGTGAAACGCGGCGGTGGGGGGCGGATAATACTGATATCATCAACCGCGGTGGCAGCAGCAACAGCGGGAATAGGGGCATACACAGCATCAAAGGCGGCGGTGGAGGCAATGACGAAGGTGGCAGCAAAGGAGATGAGAGGGAGCAAAATAACAGTGAACTGCATAGCGCCGGGGGCGACGGCGACGGAGATGTTGTACGGAGGAATGGATGAGGAAGCAGTGAAGAGAGTGATTGAAAAGTGTCCGCTGGGGAGGGTTGGGGAACCCAAAGATGTGGCCTCTTTTGTTGGGTTCTTGGCGTCCGATGAAGGCGAGTGGATCAACGGTCAAGTCATGCTCGTCAATGGCGGCATCGTCTAGCTTCTGAAAATGGCGAACCCATCATCAGTCGTCATTATATTATTCTAAAATTAGGCACCACCTACTATGCTCGTTGAACATTAAGAAACAAAATTGTTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTAAATAAGGAGTATATGTCAATTTTTACCTACGTAACCATTTT

mRNA sequence

GAGAGATGGCGGCAGAGAGGGAGAATTAAAGAAAAGCCGTTATGAGTGGATAAAGGGACCAAAATAGAAATCCAAAGGAAAACATTGGTGGGAGAGTAAGGTAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTCAAGAACACGGGACCGAAACTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCAGCTCTGAGCCTCAAGAAAAGGTAGGTTCATGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAAAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTCATAAGAATGGGGTTCGAAGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCGAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAATGTATTATTTCCTCTTTAATCTTCATATTTTTACCCAAATTCATTATCAAATGAACACCTGATCAAGTACAAGTAGCAGCTAAAATATTTACATATGCTCCTCTATTTTCGAGAACTTGGTGTACGAGCTTCTTTGTTTATACAATAAATCCACCGACTTCCCAATATGATATTACTAATCAGGATCAACAAGTTGGCTCTGTTTTGTTGTTGTCACGTTCTATTATAATATAGAGTCACTTGAATTTGTCAATCTCAACCTCCCGTGACTACAATGGCTTCAGAATCAGGCCCTGCTGTGGCTGCTCTGCCGCTGCAGGATCGAGTGGTCATTGTAACCGGTGCCTCTCGGGGCATCGGCCGAGCCATCGCCTTTCACCTCGCTGCTCTTGGCGCCCGTATTGTTGTCAATTATGTGTCATCCTCGGCCAAAGCTGACCGTGTTGCTGCTGAGATCAATTCATCCTCGGCCACCGGGAGTGGCCTACGAGCCATTGCTTGGCGGGCAGATGTGTCCGATCCAGAGCAAGTGAAGTCGCTGTTTGACACAGCCGAGCAGAGATTTGGCGCCCAAGTCCATATCATGGTTAATTGTGCTGGAATTTCTGATCCTACTTACCCTTATATCGCTGATACTTCACTGGAGATTTTTGACCAGATTTTCAGTGTGAACACGAGGGGAAGTTTCCTGTGCTGCAGAGAAGCAGCAAACAGAGTGAAACGCGGCGGTGGGGGGCGGATAATACTGATATCATCAACCGCGGTGGCAGCAGCAACAGCGGGAATAGGGGCATACACAGCATCAAAGGCGGCGGTGGAGGCAATGACGAAGGTGGCAGCAAAGGAGATGAGAGGGAGCAAAATAACAGTGAACTGCATAGCGCCGGGGGCGACGGCGACGGAGATGTTGTACGGAGGAATGGATGAGGAAGCAGTGAAGAGAGTGATTGAAAAGTGTCCGCTGGGGAGGGTTGGGGAACCCAAAGATGTGGCCTCTTTTGTTGGGTTCTTGGCGTCCGATGAAGGCGAGTGGATCAACGGTCAAGTCATGCTCGTCAATGGCGGCATCGTCTAGCTTCTGAAAATGGCGAACCCATCATCAGTCGTCATTATATTATTCTAAAATTAGGCACCACCTACTATGCTCGTTGAACATTAAGAAACAAAATTGTTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTAAATAAGGAGTATATGTCAATTTTTACCTACGTAACCATTTT

Coding sequence (CDS)

ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCTTCCCTCTCCCCTTCTGCAACTTCCCCTTTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTCGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCCGATGCCATTGATGCTCTCCAGGTGGAGTTGAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTCAAGAACACGGGACCGAAACTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCAGCTCTGAGCCTCAAGAAAAGGTAGGTTCATGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAAAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTCATAAGAATGGGGTTCGAAGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCGAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA

Protein sequence

MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDLTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL

Homology

[Close]

BLAST of Cp4.1LG08g06610 vs. Swiss-Prot
Match: PNSB2_ARATH (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana GN=PNSB2 PE=2 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 4.1e-115
Identity = 212/357 (59.38%), Postives = 264/357 (73.95%), Query Frame = 1


Query: 1   MASLVCLPL-PKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVD 60
           MASL+   L PK   VR      SS+S   T  +  + L DKFGRKGI F +SN IP V+
Sbjct: 1   MASLISFSLLPKPKAVR------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIPMVE 60

Query: 61  LTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSA 120
           L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +     
Sbjct: 61  LKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVDG-DESRGGVGVVIVNGEEPK 120

Query: 121 SKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPK 180
              S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN G K
Sbjct: 121 GGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNNGRK 180

Query: 181 LLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFS 240
            ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W  F 
Sbjct: 181 PVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW--FG 240

Query: 241 SEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRV 300
           SE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQGR LFFR+
Sbjct: 241 SEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQGRGLFFRM 300

Query: 301 IRMGFEDIYVQSPGSLSDKFGKD-YFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           IR+GFE++YV SPGS+ DK+GK  YF+CTGP SMLVPV V  GE WRGA VIEHDNL
Sbjct: 301 IRIGFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHDNL 348

[Close]

BLAST of Cp4.1LG08g06610 vs. TrEMBL
Match: A0A0A0LCL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843790 PE=4 SV=1)

HSP 1 Score: 605.5 bits (1560), Expect = 4.1e-170
Identity = 304/355 (85.63%), Postives = 324/355 (91.27%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASLVCLPLPK +++RASSSSSSS S     P   DSLNDKFGRKG HFH SNG+PT+DL
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSSTS----FPSTVDSLNDKFGRKGFHFHDSNGVPTLDL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSAS 120
           TVRNGSSLRL ISDAH+ SYKPKVYWKDDGFEEVLFTTP A   KGGI LVI+DAS+S+S
Sbjct: 61  TVRNGSSLRLRISDAHLTSYKPKVYWKDDGFEEVLFTTPTA---KGGIALVIDDASDSSS 120

Query: 121 KPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKL 180
           K SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIVKNTG K 
Sbjct: 121 KSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIVKNTGLKP 180

Query: 181 LSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFSS 240
           L+L SAILSHFKFKRRDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+ DWFSF S
Sbjct: 181 LTLKSAILSHFKFKRRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEESDWFSFGS 240

Query: 241 EPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVI 300
           EPQ K GSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGRELFFRVI
Sbjct: 241 EPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGRELFFRVI 300

Query: 301 RMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           RMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTV+PGEQWRGAQVIEHDNL
Sbjct: 301 RMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL 348

[Close]

BLAST of Cp4.1LG08g06610 vs. TrEMBL
Match: A0A0F7GZM2_9ROSI (Photosynthetic NDH subcomplex B 2 OS=Hypseocharis bilobata GN=PnsB2 PE=2 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 7.0e-138
Identity = 247/357 (69.19%), Postives = 295/357 (82.63%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+   LPKL+I++ASSSS+++ + + ++P   +SL DKFG+KGI F +SN  P V+L
Sbjct: 1   MASLLPFSLPKLNIIKASSSSTTATATTLSTP---ESLEDKFGKKGIKFLESNNTPFVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGG--KGGIGLVINDASNS 120
           TVRNGSSLRL I +AH+ SYKPKV+WKDDGFEE+L+T P   G   +GGIGLV+NDAS S
Sbjct: 61  TVRNGSSLRLQIPNAHVTSYKPKVFWKDDGFEEILYTVPGGGGADSRGGIGLVLNDASES 120

Query: 121 ASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGP 180
            SK SLL  S+WTVKDVDSDAIDALQVELSC++  ++ITY++TLY  S+ATAVIVKNTG 
Sbjct: 121 GSKGSLLSGSEWTVKDVDSDAIDALQVELSCTAGTLDITYVITLYPVSIATAVIVKNTGR 180

Query: 181 KLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSF 240
           K ++L SAILSH + K+R   AIQGL+ CSYC+ PPLSSPFEILSP EAMK EDP  F+F
Sbjct: 181 KAVTLTSAILSHLRSKKRAATAIQGLQSCSYCTHPPLSSPFEILSPAEAMKTEDPGLFAF 240

Query: 241 SSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFR 300
             EP++K GSW+LQDVP TILK+K SRVYAAPP ER K VY+T PSKYET+DQGR+LFFR
Sbjct: 241 FYEPEKKPGSWTLQDVPITILKHKLSRVYAAPPKERLKDVYNTPPSKYETIDQGRKLFFR 300

Query: 301 VIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           VIRMG+EDIYV SPGS S K+GKDYFICTGPASMLVPV V PGE+WRGAQ+IEHDNL
Sbjct: 301 VIRMGYEDIYVSSPGSFSQKYGKDYFICTGPASMLVPVVVNPGEEWRGAQIIEHDNL 354

[Close]

BLAST of Cp4.1LG08g06610 vs. TrEMBL
Match: M5WSX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007725mg PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 1.0e-136
Identity = 248/361 (68.70%), Postives = 295/361 (81.72%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+   +P   ++RASSS S S +P+ + P   ++L +KFGRKGI F +S+ IP V+L
Sbjct: 1   MASLLSFSVPNSKMIRASSSQSVS-APTVSVP---ENLTEKFGRKGIKFLESDNIPIVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPA------ANGGKGGIGLVIND 120
            VRNGSSLRL I +AH+ SYKPKVYWKDDGF+EVL+T P       +   KGGIGLV+ND
Sbjct: 61  RVRNGSSLRLQIPNAHVTSYKPKVYWKDDGFQEVLYTIPGNGTDPNSTKAKGGIGLVLND 120

Query: 121 ASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVK 180
            S + SK SL+ TS+WTVKDVDSD+IDALQVELS +S  +EITY+V+LY  SMATAVIV+
Sbjct: 121 VSEAGSKGSLVSTSEWTVKDVDSDSIDALQVELSSTSGTLEITYVVSLYPVSMATAVIVR 180

Query: 181 NTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPD 240
           N G K ++L +AILSHFKFKRR GAAIQGL+GC+Y +LPPLSSPFEILSP EAMKA+ P 
Sbjct: 181 NKGRKPVTLTNAILSHFKFKRRSGAAIQGLKGCAYTALPPLSSPFEILSPAEAMKADTPG 240

Query: 241 WFSFSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRE 300
           WF F S+P+EK GSW+ QDVPFTILKNK SRVYAAPP ER KP+Y+T PSKYETLDQGRE
Sbjct: 241 WFDFGSQPEEKPGSWTHQDVPFTILKNKLSRVYAAPPKERLKPIYNTPPSKYETLDQGRE 300

Query: 301 LFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDN 356
           LF+RVIRMGFEDIY+ SPGS  +K+G++YFICTGPASMLVPV V+PGE WRGAQVIEHDN
Sbjct: 301 LFYRVIRMGFEDIYLSSPGSFYEKYGEEYFICTGPASMLVPVVVKPGEDWRGAQVIEHDN 357

[Close]

BLAST of Cp4.1LG08g06610 vs. TrEMBL
Match: A0A0F7GZL7_9ROSI (Photosynthetic NDH subcomplex B 2 OS=Francoa sonchifolia GN=PnsB2 PE=2 SV=1)

HSP 1 Score: 494.2 bits (1271), Expect = 1.3e-136
Identity = 250/359 (69.64%), Postives = 289/359 (80.50%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MAS +   LPK +I++     S S SPSA +    + L DKFGRKGI F +SN IPTV+L
Sbjct: 1   MASFLPFSLPKPNIIK-----SLSASPSAPTISIPEILEDKFGRKGIKFLESNNIPTVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANG----GKGGIGLVINDAS 120
           TVRNGSSL+L I +AH+ SYKPKVYWKDDGFEEVL+T P A       KGGIGLVINDAS
Sbjct: 61  TVRNGSSLKLQIPNAHVTSYKPKVYWKDDGFEEVLYTLPNARTDSTIAKGGIGLVINDAS 120

Query: 121 NSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNT 180
            S SK SLL  S+WTVKDVDSDAIDALQVEL C+S  ++ITY+++LY  SMATAVIVKN 
Sbjct: 121 ESGSKGSLLSASEWTVKDVDSDAIDALQVELGCTSGTLDITYVISLYPLSMATAVIVKNN 180

Query: 181 GPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWF 240
           G K ++LNSAILSHF F++R+G AIQGLEGCSYC+ PPLSSPFEILSP+EA+KAEDP  F
Sbjct: 181 GKKAVTLNSAILSHFIFQKREGTAIQGLEGCSYCTHPPLSSPFEILSPSEAIKAEDPGLF 240

Query: 241 SFSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELF 300
           SF  EP+ K G W+ Q VP TILK++ SRVYA+PP ER KP Y+T PSKYETLDQGR+LF
Sbjct: 241 SFGYEPENKPGIWTPQVVPITILKHRLSRVYASPPTERPKPFYNTPPSKYETLDQGRKLF 300

Query: 301 FRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           FRVIR+G+EDIYV SPGS S+K+GKDYFICTGPASMLVPV + PGE WRGAQVIEHDNL
Sbjct: 301 FRVIRIGYEDIYVSSPGSFSEKYGKDYFICTGPASMLVPVVINPGEDWRGAQVIEHDNL 354

[Close]

BLAST of Cp4.1LG08g06610 vs. TrEMBL
Match: A0A067L5G8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02730 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 3.9e-136
Identity = 250/357 (70.03%), Postives = 291/357 (81.51%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+   LPK +IV+A+SSSS+     ATSP   + L +KFGRKGI F +SN IP V+L
Sbjct: 1   MASLLSFSLPKPTIVKATSSSST-----ATSPPTPEILEEKFGRKGIKFLESNSIPFVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGG--KGGIGLVINDASNS 120
           TVRNGSSLRL I +AH+ SYKPKVYWKDDGF E+L+T P+ +    +GGIGL+INDAS S
Sbjct: 61  TVRNGSSLRLQIPNAHVTSYKPKVYWKDDGFHEILYTVPSIDSSETRGGIGLIINDASES 120

Query: 121 ASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGP 180
            SK SL+ +S WTVKDVDSDAIDALQVELS ++  ++ITYIV+LY  S+ATAVIVKN G 
Sbjct: 121 GSKGSLISSSQWTVKDVDSDAIDALQVELSSTTGTLDITYIVSLYPLSIATAVIVKNNGR 180

Query: 181 KLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSF 240
           K ++L SAILSH KFK+R  AAIQG EGCSYC   PLSSPFEILSP EAMK E    F F
Sbjct: 181 KPVTLTSAILSHLKFKKRGKAAIQGFEGCSYCPYLPLSSPFEILSPGEAMKNESAGLFDF 240

Query: 241 SSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFR 300
           SSEP++K G W +QDVPFTILKNKFSR+YAAPP ER KP+Y+T PSKYETLDQG ELFFR
Sbjct: 241 SSEPEDKPGIWRVQDVPFTILKNKFSRIYAAPPQERLKPIYNTPPSKYETLDQGLELFFR 300

Query: 301 VIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           VIRMGFED Y+ SPGSLS+K+GKDYFICTGPA+MLVPV V+PGE+W+GAQVIEHDNL
Sbjct: 301 VIRMGFEDTYIGSPGSLSEKYGKDYFICTGPAAMLVPVVVKPGEKWKGAQVIEHDNL 352

[Close]

BLAST of Cp4.1LG08g06610 vs. TAIR10
Match: AT1G64770.3 (AT1G64770.3 NDH-dependent cyclic electron flow 1)

HSP 1 Score: 316.6 bits (810), Expect = 1.9e-86
Identity = 165/295 (55.93%), Postives = 212/295 (71.86%), Query Frame = 1


Query: 1   MASLVCLPL-PKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVD 60
           MASL+   L PK   VR      SS+S   T  +  + L DKFGRKGI F +SN IP V+
Sbjct: 1   MASLISFSLLPKPKAVR------SSISAPQTQTINTEKLEDKFGRKGIKFSESNNIPMVE 60

Query: 61  LTVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSA 120
           L VRNGSSL+L +SDAH+ SYKPKVYWKD+GFEEVL+T    +  +GG+G+VI +     
Sbjct: 61  LKVRNGSSLKLSLSDAHVLSYKPKVYWKDEGFEEVLYTVDG-DESRGGVGVVIVNGEEPK 120

Query: 121 SKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPK 180
              S++   DW+VKD DSDAIDALQ+ELSC++  ++ITYIV+LY  SMATA++VKN G K
Sbjct: 121 GGSSVISGCDWSVKDTDSDAIDALQIELSCTAGVLDITYIVSLYPVSMATALVVKNNGRK 180

Query: 181 LLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFS 240
            ++L   I+S+ +FK+R GA IQGL+GCSYC  PPLSSPFE+LSP+EAMKAE   W  F 
Sbjct: 181 PVTLKPGIMSYLRFKKRSGAGIQGLKGCSYCPNPPLSSPFELLSPSEAMKAESSGW--FG 240

Query: 241 SEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRE 295
           SE  EK G W+++D   T+L+ K SR+Y APPAER K VY+T PSK+ET+DQ ++
Sbjct: 241 SEEGEKPGIWAVEDSVITLLEKKMSRIYGAPPAERLKAVYNTPPSKFETIDQKKK 286

[Close]

BLAST of Cp4.1LG08g06610 vs. NCBI nr
Match: gi|659130738|ref|XP_008465324.1| (PREDICTED: uncharacterized protein LOC103502972 [Cucumis melo])

HSP 1 Score: 606.7 bits (1563), Expect = 2.6e-170
Identity = 302/355 (85.07%), Postives = 326/355 (91.83%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASLVCLPLPK +++RASSSSSS+  PS      ADSLNDKF RKG HFH SNG+PT+DL
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSTSFPST-----ADSLNDKFARKGFHFHDSNGVPTLDL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSAS 120
           TVRNGSSLRLHISDAH+ SYKPKVYWKDDGFEE+LFTTP A   KGGI LVI+DAS+S+S
Sbjct: 61  TVRNGSSLRLHISDAHLTSYKPKVYWKDDGFEEILFTTPTA---KGGIALVIDDASDSSS 120

Query: 121 KPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKL 180
           K SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIVKNTG K 
Sbjct: 121 KSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIVKNTGLKP 180

Query: 181 LSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFSS 240
           L+L SAILSHFKFK+RDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+PDWFSF S
Sbjct: 181 LTLKSAILSHFKFKQRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEEPDWFSFGS 240

Query: 241 EPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVI 300
           EPQ K GSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGRELFFRVI
Sbjct: 241 EPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGRELFFRVI 300

Query: 301 RMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           RMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTV+PGEQW+GAQVIEHDNL
Sbjct: 301 RMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWKGAQVIEHDNL 347

[Close]

BLAST of Cp4.1LG08g06610 vs. NCBI nr
Match: gi|778686049|ref|XP_011652321.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 605.5 bits (1560), Expect = 5.9e-170
Identity = 304/355 (85.63%), Postives = 324/355 (91.27%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASLVCLPLPK +++RASSSSSSS S     P   DSLNDKFGRKG HFH SNG+PT+DL
Sbjct: 1   MASLVCLPLPKPNLIRASSSSSSSTS----FPSTVDSLNDKFGRKGFHFHDSNGVPTLDL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGGKGGIGLVINDASNSAS 120
           TVRNGSSLRL ISDAH+ SYKPKVYWKDDGFEEVLFTTP A   KGGI LVI+DAS+S+S
Sbjct: 61  TVRNGSSLRLRISDAHLTSYKPKVYWKDDGFEEVLFTTPTA---KGGIALVIDDASDSSS 120

Query: 121 KPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGPKL 180
           K SLLP+SDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSES+ATAVIVKNTG K 
Sbjct: 121 KSSLLPSSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESLATAVIVKNTGLKP 180

Query: 181 LSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSFSS 240
           L+L SAILSHFKFKRRDGAAIQGL+GCSYCS PPLSSPFEILSP+EAMK E+ DWFSF S
Sbjct: 181 LTLKSAILSHFKFKRRDGAAIQGLQGCSYCSHPPLSSPFEILSPSEAMKVEESDWFSFGS 240

Query: 241 EPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFRVI 300
           EPQ K GSWSLQDVPFT+LKNKFSRVYAAPPAER KP+YHTTPSKYETLDQGRELFFRVI
Sbjct: 241 EPQGKAGSWSLQDVPFTMLKNKFSRVYAAPPAERLKPIYHTTPSKYETLDQGRELFFRVI 300

Query: 301 RMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           RMGFEDIYV SPGSLS+KFGKD+FICTGPASMLVPVTV+PGEQWRGAQVIEHDNL
Sbjct: 301 RMGFEDIYVSSPGSLSNKFGKDHFICTGPASMLVPVTVKPGEQWRGAQVIEHDNL 348

[Close]

BLAST of Cp4.1LG08g06610 vs. NCBI nr
Match: gi|595937516|ref|XP_007215595.1| (hypothetical protein PRUPE_ppa007725mg [Prunus persica])

HSP 1 Score: 494.6 bits (1272), Expect = 1.5e-136
Identity = 248/361 (68.70%), Postives = 295/361 (81.72%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+   +P   ++RASSS S S +P+ + P   ++L +KFGRKGI F +S+ IP V+L
Sbjct: 1   MASLLSFSVPNSKMIRASSSQSVS-APTVSVP---ENLTEKFGRKGIKFLESDNIPIVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPA------ANGGKGGIGLVIND 120
            VRNGSSLRL I +AH+ SYKPKVYWKDDGF+EVL+T P       +   KGGIGLV+ND
Sbjct: 61  RVRNGSSLRLQIPNAHVTSYKPKVYWKDDGFQEVLYTIPGNGTDPNSTKAKGGIGLVLND 120

Query: 121 ASNSASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVK 180
            S + SK SL+ TS+WTVKDVDSD+IDALQVELS +S  +EITY+V+LY  SMATAVIV+
Sbjct: 121 VSEAGSKGSLVSTSEWTVKDVDSDSIDALQVELSSTSGTLEITYVVSLYPVSMATAVIVR 180

Query: 181 NTGPKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPD 240
           N G K ++L +AILSHFKFKRR GAAIQGL+GC+Y +LPPLSSPFEILSP EAMKA+ P 
Sbjct: 181 NKGRKPVTLTNAILSHFKFKRRSGAAIQGLKGCAYTALPPLSSPFEILSPAEAMKADTPG 240

Query: 241 WFSFSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRE 300
           WF F S+P+EK GSW+ QDVPFTILKNK SRVYAAPP ER KP+Y+T PSKYETLDQGRE
Sbjct: 241 WFDFGSQPEEKPGSWTHQDVPFTILKNKLSRVYAAPPKERLKPIYNTPPSKYETLDQGRE 300

Query: 301 LFFRVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDN 356
           LF+RVIRMGFEDIY+ SPGS  +K+G++YFICTGPASMLVPV V+PGE WRGAQVIEHDN
Sbjct: 301 LFYRVIRMGFEDIYLSSPGSFYEKYGEEYFICTGPASMLVPVVVKPGEDWRGAQVIEHDN 357

[Close]

BLAST of Cp4.1LG08g06610 vs. NCBI nr
Match: gi|255568932|ref|XP_002525436.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Ricinus communis])

HSP 1 Score: 492.7 bits (1267), Expect = 5.5e-136
Identity = 248/358 (69.27%), Postives = 293/358 (81.84%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+ L LPK +I++A+SS++++     T P P D L +KFGRKGI F +SN IP  +L
Sbjct: 1   MASLLSLSLPKPTIIKATSSTTTT----TTLPSP-DVLEEKFGRKGIKFLESNNIPIAEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTP---AANGGKGGIGLVINDASN 120
           TVRNGSSLRL I DAH+ SYKPKVYWKDDGF E+L+T P   +++  +GGIGLVINDAS+
Sbjct: 61  TVRNGSSLRLQIPDAHVTSYKPKVYWKDDGFHEILYTVPGKDSSSKARGGIGLVINDASD 120

Query: 121 SASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTG 180
           S SK SL+  S+WTVKDVDSDAIDALQVEL C+S  ++I+YIV+LY ESMATAVIVKN G
Sbjct: 121 SGSKGSLITNSEWTVKDVDSDAIDALQVELGCTSGTLDISYIVSLYPESMATAVIVKNNG 180

Query: 181 PKLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFS 240
            K ++L SAILSH KFKRR  AA+QG  GCSY   PPLSSPFEILSP EAMK+E P  F 
Sbjct: 181 RKPVTLTSAILSHLKFKRRQKAAVQGFRGCSYLPHPPLSSPFEILSPGEAMKSESPGLFD 240

Query: 241 FSSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFF 300
           FSSEP++K+G W +QDVPFTILKNKFSR+YAAPP ER K  Y+T PSKYETLDQG ELFF
Sbjct: 241 FSSEPEDKLGIWGVQDVPFTILKNKFSRIYAAPPQERLKAFYNTPPSKYETLDQGLELFF 300

Query: 301 RVIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           RVIRMGFED Y+ SPGSLS+K+G++YFICTGPA+M+VPV V+PGE WRGAQVIEHDNL
Sbjct: 301 RVIRMGFEDTYMGSPGSLSEKYGEEYFICTGPAAMIVPVIVKPGEDWRGAQVIEHDNL 353

[Close]

BLAST of Cp4.1LG08g06610 vs. NCBI nr
Match: gi|802585510|ref|XP_012070466.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Jatropha curcas])

HSP 1 Score: 492.7 bits (1267), Expect = 5.5e-136
Identity = 250/357 (70.03%), Postives = 291/357 (81.51%), Query Frame = 1


Query: 1   MASLVCLPLPKLSIVRASSSSSSSLSPSATSPLPADSLNDKFGRKGIHFHQSNGIPTVDL 60
           MASL+   LPK +IV+A+SSSS+     ATSP   + L +KFGRKGI F +SN IP V+L
Sbjct: 1   MASLLSFSLPKPTIVKATSSSST-----ATSPPTPEILEEKFGRKGIKFLESNSIPFVEL 60

Query: 61  TVRNGSSLRLHISDAHIPSYKPKVYWKDDGFEEVLFTTPAANGG--KGGIGLVINDASNS 120
           TVRNGSSLRL I +AH+ SYKPKVYWKDDGF E+L+T P+ +    +GGIGL+INDAS S
Sbjct: 61  TVRNGSSLRLQIPNAHVTSYKPKVYWKDDGFHEILYTVPSIDSSETRGGIGLIINDASES 120

Query: 121 ASKPSLLPTSDWTVKDVDSDAIDALQVELSCSSKQMEITYIVTLYSESMATAVIVKNTGP 180
            SK SL+ +S WTVKDVDSDAIDALQVELS ++  ++ITYIV+LY  S+ATAVIVKN G 
Sbjct: 121 GSKGSLISSSQWTVKDVDSDAIDALQVELSSTTGTLDITYIVSLYPLSIATAVIVKNNGR 180

Query: 181 KLLSLNSAILSHFKFKRRDGAAIQGLEGCSYCSLPPLSSPFEILSPTEAMKAEDPDWFSF 240
           K ++L SAILSH KFK+R  AAIQG EGCSYC   PLSSPFEILSP EAMK E    F F
Sbjct: 181 KPVTLTSAILSHLKFKKRGKAAIQGFEGCSYCPYLPLSSPFEILSPGEAMKNESAGLFDF 240

Query: 241 SSEPQEKVGSWSLQDVPFTILKNKFSRVYAAPPAERSKPVYHTTPSKYETLDQGRELFFR 300
           SSEP++K G W +QDVPFTILKNKFSR+YAAPP ER KP+Y+T PSKYETLDQG ELFFR
Sbjct: 241 SSEPEDKPGIWRVQDVPFTILKNKFSRIYAAPPQERLKPIYNTPPSKYETLDQGLELFFR 300

Query: 301 VIRMGFEDIYVQSPGSLSDKFGKDYFICTGPASMLVPVTVEPGEQWRGAQVIEHDNL 356
           VIRMGFED Y+ SPGSLS+K+GKDYFICTGPA+MLVPV V+PGE+W+GAQVIEHDNL
Sbjct: 301 VIRMGFEDTYIGSPGSLSEKYGKDYFICTGPAAMLVPVVVKPGEKWKGAQVIEHDNL 352

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g06610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSB2_ARATH	4.1e-115	59.38	Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thali...	[more]

BLAST of Cp4.1LG08g06610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCL5_CUCSA	4.1e-170	85.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843790 PE=4 SV=1	[more]
A0A0F7GZM2_9ROSI	7.0e-138	69.19	Photosynthetic NDH subcomplex B 2 OS=Hypseocharis bilobata GN=PnsB2 PE=2 SV=1	[more]
M5WSX3_PRUPE	1.0e-136	68.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007725mg PE=4 SV=1	[more]
A0A0F7GZL7_9ROSI	1.3e-136	69.64	Photosynthetic NDH subcomplex B 2 OS=Francoa sonchifolia GN=PnsB2 PE=2 SV=1	[more]
A0A067L5G8_JATCU	3.9e-136	70.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02730 PE=4 SV=1	[more]

BLAST of Cp4.1LG08g06610 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64770.3	1.9e-86	55.93	NDH-dependent cyclic electron flow 1	[more]

BLAST of Cp4.1LG08g06610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130738\|ref\|XP_008465324.1\|	2.6e-170	85.07	PREDICTED: uncharacterized protein LOC103502972 [Cucumis melo]	[more]
gi\|778686049\|ref\|XP_011652321.1\|	5.9e-170	85.63	PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucumis ...	[more]
gi\|595937516\|ref\|XP_007215595.1\|	1.5e-136	68.70	hypothetical protein PRUPE_ppa007725mg [Prunus persica]	[more]
gi\|255568932\|ref\|XP_002525436.1\|	5.5e-136	69.27	PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Ricinus ...	[more]
gi\|802585510\|ref\|XP_012070466.1\|	5.5e-136	70.03	PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Jatropha...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR014718	GH-type_carb-bd
IPR011013	Gal_mutarotase_sf_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010598	NAD(P)H dehydrogenase complex (plastoquinone)
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g06610.1	Cp4.1LG08g06610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011013	Galactose mutarotase-like domain	unknown	SSF74650	Galactose mutarotase-like	coord: 47..213 score: 2.1E-12coord: 260..350 score: 2.1
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	G3DSA:2.70.98.10		coord: 245..351 score: 3.9E-27coord: 41..211 score: 3.9
None	No IPR available	PANTHER	PTHR11122	APOSPORY-ASSOCIATED PROTEIN C-RELATED	coord: 1..213 score: 2.0E-170coord: 244..355 score: 2.0E
None	No IPR available	PANTHER	PTHR11122:SF18	NDH-DEPENDENT CYCLIC ELECTRON FLOW 1	coord: 244..355 score: 2.0E-170coord: 1..213 score: 2.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g06610	Cucsa.340540	Cucumber (Gy14) v1	cgycpeB0902
Cp4.1LG08g06610	CmaCh06G017310	Cucurbita maxima (Rimu)	cmacpeB853
Cp4.1LG08g06610	CmoCh06G017180	Cucurbita moschata (Rifu)	cmocpeB796
Cp4.1LG08g06610	Cla017174	Watermelon (97103) v1	cpewmB831
Cp4.1LG08g06610	Csa3G843790	Cucumber (Chinese Long) v2	cpecuB865
Cp4.1LG08g06610	MELO3C026889	Melon (DHL92) v3.5.1	cpemeB798
Cp4.1LG08g06610	ClCG10G013330	Watermelon (Charleston Gray)	cpewcgB769
Cp4.1LG08g06610	CSPI03G40800	Wild cucumber (PI 183967)	cpecpiB867
Cp4.1LG08g06610	Lsi03G012980	Bottle gourd (USVL1VR-Ls)	cpelsiB709
Cp4.1LG08g06610	MELO3C026889.2	Melon (DHL92) v3.6.1	cpemedB939
Cp4.1LG08g06610	CsaV3_3G043290	Cucumber (Chinese Long) v3	cpecucB1061
Cp4.1LG08g06610	Bhi11G001295	Wax gourd	cpewgoB1077
Cp4.1LG08g06610	CsGy3G038260	Cucumber (Gy14) v2	cgybcpeB458
Cp4.1LG08g06610	Carg15409	Silver-seed gourd	carcpeB0974

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g06610	Cucurbita pepo (Zucchini)	cpecpeB490
Cp4.1LG08g06610	Cucurbita maxima (Rimu)	cmacpeB293