CmoCh06G017180 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCAGAGAGGGAGAATTAAAGAAGAGCCGTTATGAGTGGATAAAGGGACCAAAATAGAAATCCATAGGAAAACATTGGTGGGAGAGTAAGGTAAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCCTCCCTCTCTCCTTCTGCAACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCTGATGCCATTGATGCTCTCCAGGTATATCTAGCATATATCTAATATATCTTTGACCAAATTTTGCCTGGTTCTCTTTGGGCTTTGCTTCTTCATTTATTTATGATCTTTGCTGCGTCAAGCGTTGAGTGAATTCATTTGTCTTGTTTTTCTCCTAATTATGCTGTGGGACTGCAGGAGCAGAAGCTACATTAATGATTTAAGTTAGTGTAACCAGTTGTCTACCTGGAATCTGAGCTCTATTTTGTATTTGATTTGGTTGGACGCTTTTTTTTTTGTTAGGAACTATGGACCTTCCATGATGGTATGATATTGTTTACTTTGAACATAAACTCTACCCGGAATCTCATAACTTTGCTTTTAGTTTCCCCAAAAGCCTCGTATCAATGGAGATTGTGTTCCTTATTTATGAACCCATGATCTTCCTCTTAATTTGCTAATGTGTGACTATTCTTTTCAACCATTCTCAACAGTCCTCCCCTCGAACAAAGTGTACCATAGAGCCTTCCCTGAGACCTATGGAGCTCTCAAACAGTTTCCTTAATCGAGACTCAATTTCTTTCTTTGGAGCCCTCGAATAAAGTACACCATTTGTTCGACACCTCGAGGCTCACAATTTCTTTGTTTGACATTCGAGGATTTTATTGACATAATTAAATTAAGGGCATGACTCTGATACCAGGTTAGGAATCACAAATCCCCACAATGATATGATATTGTTCACTTTGAGCATAAGCTCTCGTAACTTTACTTTTGGTTTTCCTAAAAGGCCTCATACCAATAGAGATAGTGTTCCTTACTTTGTAAACTCATAATCTTCCTCTTAATTAGCTAAAGTGAGACTACTTCTTTTAATAATCCTCAACCGATCTAACAAATCCTCCCTTCAAATGAGTATTCATTTGTCCACTCTCTATCATGATTCTAATATTTTCGTGATCCCTGGTTAAACGATTAGATGTGTGAGAGGTTTAAGAACTGTATTTCATGAATTTTAGGAGGTAGACAAGATTTGAATTGCATTGGATTGTTATTGGGAAGCAGCTACGTTGTGGCGATCATATTAAATAATTTCTCCCTTCTGTCATATTATGTTTGGAACGTGATTCTGAGCTTGCGTAGTTATTGTTTTCATCTCTATATTGGTAATGATATCATCATTATACTAATTAAGATTTTGTTCTTCCTTCTCAACTCATATTTTTCCTCACTGTAGTGCTAAGTAATGAAGGGTTGAAAACATCTCGTCTTTTGTTAAGACAGTGTACCAAGTTGTGTAAGTTGAATGCCTTTGTATGTGGAGGTTTCATTTTGTTTTCCCTGGCATGGTTTTGTTGCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGTAAAGAAATAGCTACTGTATTGCATCACACATCTTTGAACATGTTTTTGGCATCGCTGAAGTACTTTCTATTCAAGAACTTTACTTCTTACTTATCTTAAGAACTTTTTACTTCTTAATCTCTTTTGGCGAAGTACTTATAAGGGAAATATTTTGACGAAAAGCACTTATGTATTTCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA GCAGAGAGGGAGAATTAAAGAAGAGCCGTTATGAGTGGATAAAGGGACCAAAATAGAAATCCATAGGAAAACATTGGTGGGAGAGTAAGGTAAAGGATGAGCTTAGGACACTCTTCTTCAACTCTGTGTGGAAGCCATTAATTCCTCCTCTTTTATCTCTCAATCTCCCATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCCTCCCTCTCTCCTTCTGCAACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCTGATGCCATTGATGCTCTCCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA ATGGCTTCTCTGGTTTGCCTTCCCCTCCCAAAGCTAAGCATTGTTAGGGCTTCTTCTTCTTCTTCTTCCTCCCTCTCTCCTTCTGCAACTTCCCCTCTACCCGCCGATTCTCTCAACGACAAATTTGGCCGCAAGGGCATCCACTTCCACCAGTCTAATGGCATTCCCACCGTTGACCTCACCGTCCGCAACGGCAGCTCCTTACGCCTCCACATCTCCGATGCCCATATCCCTTCCTACAAACCCAAAGTCTATTGGAAGGACGACGGCTTCGAGGAAGTTCTCTTCACTACTCCCGCCGCCAATGGCGGAAAAGGAGGGATTGGCCTTGTGATCAACGATGCGTCCAATTCAGCCTCTAAACCCTCTCTTCTTCCCACTTCTGATTGGACCGTCAAAGATGTCGATTCTGATGCCATTGATGCTCTCCAGGTGGAGTTAAGCTGCAGTAGCAAGCAAATGGAGATTACTTACATTGTCACTCTCTATTCCGAAAGTATGGCGACGGCTGTGATTGTGAAGAACACGGGACCGAAGTTGTTGTCGCTAAACAGCGCAATACTGAGTCATTTCAAGTTCAAACGACGAGATGGGGCAGCAATCCAGGGGCTTGAAGGATGCTCCTACTGTTCTCTCCCTCCCTTATCTTCCCCTTTTGAAATACTGTCTCCTACAGAAGCAATGAAGGCAGAGGACCCCGATTGGTTCTCGTTCGGTTCTGAGCCTCAAGAAAAGGCAGGTTCGTGGAGCCTCCAAGATGTGCCCTTCACCATCTTGAAGAACAAGTTCAGTAGAGTTTATGCCGCACCACCAGCAGAGAGGTCGAAGCCTGTATATCACACCACACCTTCGAAGTATGAGACTCTTGATCAGGGACGAGAGCTGTTCTTCAGGGTGATAAGAATGGGGTTCGAGGACATATACGTACAAAGCCCTGGTTCATTATCTGACAAGTTTGGCAAAGACTACTTCATATGCACTGGCCCTGCTTCCATGTTAGTTCCTGTCACAGTCAAACCTGGTGAACAATGGAGGGGCGCCCAAGTTATTGAGCATGATAACTTGTAA
BLAST of CmoCh06G017180 vs. Swiss-Prot
Match: PNSB2_ARATH (Photosynthetic NDH subunit of subcomplex B 2, chloroplastic OS=Arabidopsis thaliana GN=PNSB2 PE=2 SV=1) HSP 1 Score: 419.1 bits (1076), Expect = 4.9e-116 Identity = 213/357 (59.66%), Postives = 265/357 (74.23%), Query Frame = 1
BLAST of CmoCh06G017180 vs. Swiss-Prot
Match: AAPC_CENCI (Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 7.0e-06 Identity = 26/76 (34.21%), Postives = 39/76 (51.32%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TrEMBL
Match: A0A0A0LCL5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G843790 PE=4 SV=1) HSP 1 Score: 611.7 bits (1576), Expect = 5.7e-172 Identity = 307/355 (86.48%), Postives = 326/355 (91.83%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TrEMBL
Match: M5WSX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007725mg PE=4 SV=1) HSP 1 Score: 499.6 bits (1285), Expect = 3.2e-138 Identity = 250/361 (69.25%), Postives = 296/361 (81.99%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TrEMBL
Match: A0A0F7GZM2_9ROSI (Photosynthetic NDH subcomplex B 2 OS=Hypseocharis bilobata GN=PnsB2 PE=2 SV=1) HSP 1 Score: 499.2 bits (1284), Expect = 4.1e-138 Identity = 247/357 (69.19%), Postives = 295/357 (82.63%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TrEMBL
Match: A0A0F7GZL7_9ROSI (Photosynthetic NDH subcomplex B 2 OS=Francoa sonchifolia GN=PnsB2 PE=2 SV=1) HSP 1 Score: 497.3 bits (1279), Expect = 1.6e-137 Identity = 251/359 (69.92%), Postives = 290/359 (80.78%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TrEMBL
Match: A0A067L5G8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02730 PE=4 SV=1) HSP 1 Score: 493.8 bits (1270), Expect = 1.7e-136 Identity = 250/357 (70.03%), Postives = 290/357 (81.23%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TAIR10
Match: AT1G64770.3 (AT1G64770.3 NDH-dependent cyclic electron flow 1) HSP 1 Score: 319.7 bits (818), Expect = 2.3e-87 Identity = 166/295 (56.27%), Postives = 213/295 (72.20%), Query Frame = 1
BLAST of CmoCh06G017180 vs. TAIR10
Match: AT5G57330.1 (AT5G57330.1 Galactose mutarotase-like superfamily protein) HSP 1 Score: 50.1 bits (118), Expect = 3.4e-06 Identity = 25/76 (32.89%), Postives = 43/76 (56.58%), Query Frame = 1
BLAST of CmoCh06G017180 vs. NCBI nr
Match: gi|659130738|ref|XP_008465324.1| (PREDICTED: uncharacterized protein LOC103502972 [Cucumis melo]) HSP 1 Score: 612.8 bits (1579), Expect = 3.7e-172 Identity = 305/355 (85.92%), Postives = 328/355 (92.39%), Query Frame = 1
BLAST of CmoCh06G017180 vs. NCBI nr
Match: gi|778686049|ref|XP_011652321.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Cucumis sativus]) HSP 1 Score: 611.7 bits (1576), Expect = 8.2e-172 Identity = 307/355 (86.48%), Postives = 326/355 (91.83%), Query Frame = 1
BLAST of CmoCh06G017180 vs. NCBI nr
Match: gi|595937516|ref|XP_007215595.1| (hypothetical protein PRUPE_ppa007725mg [Prunus persica]) HSP 1 Score: 499.6 bits (1285), Expect = 4.5e-138 Identity = 250/361 (69.25%), Postives = 296/361 (81.99%), Query Frame = 1
BLAST of CmoCh06G017180 vs. NCBI nr
Match: gi|802585510|ref|XP_012070466.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Jatropha curcas]) HSP 1 Score: 493.8 bits (1270), Expect = 2.5e-136 Identity = 250/357 (70.03%), Postives = 290/357 (81.23%), Query Frame = 1
BLAST of CmoCh06G017180 vs. NCBI nr
Match: gi|255568932|ref|XP_002525436.1| (PREDICTED: photosynthetic NDH subunit of subcomplex B 2, chloroplastic [Ricinus communis]) HSP 1 Score: 492.3 bits (1266), Expect = 7.2e-136 Identity = 248/358 (69.27%), Postives = 291/358 (81.28%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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