Cp4.1LG08g06480 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g06480
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHumj1 family protein
LocationCp4.1LG08 : 271024 .. 272871 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTCGACAAGACGTCCTGGACCCCAACTGAGTTGTTCCGGTAAGATTCCCACGCGCGTAAGCGTCCTCTTCACGCCCACACATTAATTAATTATTTATTTATTAAAAAGAAAAAAAAAGGTTGTTAATTTCCATCTCCCATTTTCTTTCTTTCCTTCTGGTTCCTTCATTTGTTGTTCATGTTCTTAAGCTTTGGTGGGTTAGTAATGAGTACACCTCCAAATATGGCAACAATCACAGCCGCCTTAGAACGCTCTCTTCAAAACTGTTCCTTAAGCCGCCACCGCCGCCGCCATCATGATCATCATCACCAACAACAACAAGCCCCAAATTCCTCTTCTTCTGATCTTCTTCAACCTCCCACCACTTTGGACCTCAACTCCCATATCTCTCTCCCTTGCCACTGGGAGCAGTGTCTCGACTTAAAGGTTATCTTTTTTGGGTTCAGTTGATTATTATTGGGAGAGAGTCTCAGATGAGCTAATTTAGGAATGATCATGAGTTTCTCCTTTTGGAAAGCCCAAAGCTCTTCTGGGAGGGAGTAGTTAATTCAGGGAATGATCATGAGTTTATAAGTAAGGAATACATATTCATTGATATGAGGCGTTATTCCTACAAAAACTTATTAGGGTTTCGTGTTTGGGTATAGAATTCATGGAAAGGAAGGAACTTTAAGGGGGTTTTTTGAAATTTTGTTTAATGGGTTTTGTTTAAATGTGAAGGGTTGCTTATAATTTGAAGAGAATATGGAGAATGTGAGGTTTTTTGTTTGTTTTTTTTTTGGCAGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAAGATCCAAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGATGATAGTGACGAGTCGTCGACAGAGTCATCGAATAACAACAATGAGAACAACAAGAACTATGCAGCCATGGAAGAACAGGAAGAAGAAGAGGAGGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTTGTTGAAGATTGTCCAAAATGCAGTAATGGTCAGCTTCTTCATTTTGATCGCTCTGAAAATGAGATTCCATGAATGACACAACTTTCCACTTGCTTTTCTTTCTGGGTTTTCCTTTCTTTGGCTTTGATTCATGGGGGAATGAGAGGAAAAAGAAGAGAGAGAAAAACCCTTTTCATTTTTGCCTTTCAAATTGTTTCCATGTGTATTTGTATTTGTCAGAAAAGGAGGCCAATGGGTTTTGGTTTTGGTTTTAGTTTTGGCTTTTGTTTTATAAATTTCTTCATTTTTTGTTCTTCTTTTTCAACTCTAATCATGTGAATGGGTGTTGAATTGCAAACAAACCTTAGTTTAATGGAAATAGAATTTCAAGAAAAGAATCAAACCCTAAACAAGTAATAATATATTCTAACAACACTCTTATTTTTCAAGTTTTGTATTCATTTAAGGTAGTTTCGTTTGTTCTCGGGTACAAACTTTCATGAGGTTTTTTAGTTCAAACATGCTAAGGTTGAGAATGGAATTCTTAATCATTTGGTTGAGATTTTAATAGTTTAACGAGATGAGTTATAGCGATAGGGTACAAACTTTCACAAGATTTTTTAGTTCAAACATACTAAGGTTGAGAATGGAATTCTTAATCATTTGGTTGAGATTATAATATTTTAACGAGACAATTTATAGCTGCATGCATGCAACCTATATTCATTTTGGATTCCAAACTTTTGAGTTTATTTCCTTCTAACAAATAGATAATACCAACTCTGAGTATGCATGA

mRNA sequence

ATGATGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAAGATCCAAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGATGATAGTGACGAGTCGTCGACAGAGTCATCGAATAACAACAATGAGAACAACAAGAACTATGCAGCCATGGAAGAACAGGAAGAAGAAGAGGAGGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTTGTTGAAGATTGTCCAAAATGCAGTAATGATAATACCAACTCTGAGTATGCATGA

Coding sequence (CDS)

ATGATGACGGGGGAGATTTACTACATAAACTGGAGGAATGGAATGAAGGCGAAGGAAGATCCAAGGTCTATCACAGAAGATCATTATAGTGAAGATTACTATTACTCGGATGACGATGACGATGATGATAGTGACGAGTCGTCGACAGAGTCATCGAATAACAACAATGAGAACAACAAGAACTATGCAGCCATGGAAGAACAGGAAGAAGAAGAGGAGGAGGAGGAGGATGTGTTGGTGGTGGCAGGTTGCAAGAGCTGCCTAATGTATTTTATGGTGCCAAAGCTTGTTGAAGATTGTCCAAAATGCAGTAATGATAATACCAACTCTGAGTATGCATGA

Protein sequence

MMTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDDSDESSTESSNNNNENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCSNDNTNSEYA
BLAST of Cp4.1LG08g06480 vs. TrEMBL
Match: A0A0A0KTY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009890 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-22
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSIT------EDHYSEDY--YYSDDDDDDD------SDE 60
           + TGEIYYINWRNGMKAKEDPRS        +D YSEDY  YYSDD +++D      S+E
Sbjct: 77  LKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCYYYSDDHEEEDDISSYDSEE 136

Query: 61  SSTESSNNNNENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCSN 106
           SSTES+N   +  K +        EEEEE+DVLVV GCK CLMYFMVPK ++DCPKC+N
Sbjct: 137 SSTESTNMRKKK-KTFVV------EEEEEKDVLVVGGCKRCLMYFMVPKHLQDCPKCNN 188

BLAST of Cp4.1LG08g06480 vs. TrEMBL
Match: Q5HZ54_ARATH (At2g33510 OS=Arabidopsis thaliana GN=At2g33510 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-22
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNN 60
           + TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++
Sbjct: 69  LKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSS 128

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
            EN+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 129 RENHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 175

BLAST of Cp4.1LG08g06480 vs. TrEMBL
Match: O22801_ARATH (Putative uncharacterized protein At2g33510 OS=Arabidopsis thaliana GN=At2g33510 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-22
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNN 60
           + TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++
Sbjct: 64  LKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSS 123

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
            EN+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 124 RENHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 170

BLAST of Cp4.1LG08g06480 vs. TrEMBL
Match: F4IFU5_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g33510 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-22
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1

Query: 3   TGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNNNE 62
           TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++ E
Sbjct: 86  TGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSSRE 145

Query: 63  NNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
           N+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 146 NHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 190

BLAST of Cp4.1LG08g06480 vs. TrEMBL
Match: V4MA02_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017284mg PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-21
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNN 60
           + TGEIYYINW+NGM+ KEDPR +   D+ S + Y +   ++D    DS+ESS+ESS ++
Sbjct: 70  LKTGEIYYINWKNGMRVKEDPRKVMNADNDSGESYGTLCSEEDSSYYDSEESSSESSPSS 129

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
            EN K     EE++EEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 130 RENQKE----EEEDEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 174

BLAST of Cp4.1LG08g06480 vs. TAIR10
Match: AT2G33510.2 (AT2G33510.2 unknown protein)

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-25
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 1

Query: 3   TGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNNNE 62
           TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++ E
Sbjct: 86  TGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSSRE 145

Query: 63  NNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
           N+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 146 NHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 190

BLAST of Cp4.1LG08g06480 vs. TAIR10
Match: AT1G28070.1 (AT1G28070.1 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.7e-15
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPR-SITEDHYSEDYYYSDDDDDDDSDESST-----ESSNN 60
           + TGEIYY +W +GM+ KEDPR S++  +Y++            S+E S+     ESS+ 
Sbjct: 60  LKTGEIYYRSWNSGMRVKEDPRKSMSRGNYADQSSGESSGTVFSSEEVSSYYESEESSSE 119

Query: 61  NNENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
           ++ +++ Y        +EE++EDVLVVAGCK+CLMYFMVPKL +DCPKC+
Sbjct: 120 SSPSSRKY-------HKEEQDEDVLVVAGCKACLMYFMVPKLFKDCPKCA 162

BLAST of Cp4.1LG08g06480 vs. NCBI nr
Match: gi|470149188|ref|XP_004310123.1| (PREDICTED: uncharacterized protein LOC101297903 [Fragaria vesca subsp. vesca])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITEDHYSEDYYYSDDDDDDD-----SDESSTESSNNN 60
           + TGEIYYINWRNGMKA+EDPR+  +  YS D YYSDDDDDDD     S+ESSTESS ++
Sbjct: 97  LKTGEIYYINWRNGMKAREDPRTTAQ--YSRDCYYSDDDDDDDDSSYDSEESSTESSPSS 156

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
           +   + Y   +++ ++  +++ VLVVAGCKSCLMY+MVPK  EDCPKCS
Sbjct: 157 SREREPYNNQQKESDQNNKQDHVLVVAGCKSCLMYYMVPKQHEDCPKCS 203

BLAST of Cp4.1LG08g06480 vs. NCBI nr
Match: gi|778689802|ref|XP_004152315.2| (PREDICTED: uncharacterized protein LOC101222996, partial [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-22
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSIT------EDHYSEDY--YYSDDDDDDD------SDE 60
           + TGEIYYINWRNGMKAKEDPRS        +D YSEDY  YYSDD +++D      S+E
Sbjct: 53  LKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCYYYSDDHEEEDDISSYDSEE 112

Query: 61  SSTESSNNNNENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCSN 106
           SSTES+N   +  K +        EEEEE+DVLVV GCK CLMYFMVPK ++DCPKC+N
Sbjct: 113 SSTESTNMRKKK-KTFVV------EEEEEKDVLVVGGCKRCLMYFMVPKHLQDCPKCNN 164

BLAST of Cp4.1LG08g06480 vs. NCBI nr
Match: gi|700197830|gb|KGN52988.1| (hypothetical protein Csa_4G009890 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 3.8e-22
Identity = 70/119 (58.82%), Postives = 83/119 (69.75%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSIT------EDHYSEDY--YYSDDDDDDD------SDE 60
           + TGEIYYINWRNGMKAKEDPRS        +D YSEDY  YYSDD +++D      S+E
Sbjct: 77  LKTGEIYYINWRNGMKAKEDPRSTIIDEDYQDDEYSEDYCYYYSDDHEEEDDISSYDSEE 136

Query: 61  SSTESSNNNNENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCSN 106
           SSTES+N   +  K +        EEEEE+DVLVV GCK CLMYFMVPK ++DCPKC+N
Sbjct: 137 SSTESTNMRKKK-KTFVV------EEEEEKDVLVVGGCKRCLMYFMVPKHLQDCPKCNN 188

BLAST of Cp4.1LG08g06480 vs. NCBI nr
Match: gi|2459433|gb|AAB80668.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 111.7 bits (278), Expect = 8.5e-22
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNN 60
           + TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++
Sbjct: 64  LKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSS 123

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
            EN+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 124 RENHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 170

BLAST of Cp4.1LG08g06480 vs. NCBI nr
Match: gi|30685734|ref|NP_180909.2| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 111.7 bits (278), Expect = 8.5e-22
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 1

Query: 1   MMTGEIYYINWRNGMKAKEDPRSITE-DHYSEDYYYSDDDDDD----DSDESSTESSNNN 60
           + TGEIYYINW+NGM+ KEDPR +   D  S D Y +   ++D    DS+ESS+ESS ++
Sbjct: 69  LKTGEIYYINWKNGMRVKEDPRKVMNADPDSGDSYGTVCSEEDSSYYDSEESSSESSPSS 128

Query: 61  NENNKNYAAMEEQEEEEEEEEDVLVVAGCKSCLMYFMVPKLVEDCPKCS 105
            EN+K     EE+EEEEEEEEDVLVVAGCK+C MYFMVPKLVEDCPKC+
Sbjct: 129 RENHKEEE--EEEEEEEEEEEDVLVVAGCKACFMYFMVPKLVEDCPKCA 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTY3_CUCSA2.7e-2258.82Uncharacterized protein OS=Cucumis sativus GN=Csa_4G009890 PE=4 SV=1[more]
Q5HZ54_ARATH5.9e-2262.39At2g33510 OS=Arabidopsis thaliana GN=At2g33510 PE=2 SV=1[more]
O22801_ARATH5.9e-2262.39Putative uncharacterized protein At2g33510 OS=Arabidopsis thaliana GN=At2g33510 ... [more]
F4IFU5_ARATH7.7e-2263.55Uncharacterized protein OS=Arabidopsis thaliana GN=At2g33510 PE=4 SV=1[more]
V4MA02_EUTSA2.9e-2160.55Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017284mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G33510.23.9e-2563.55 unknown protein[more]
AT1G28070.13.7e-1545.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|470149188|ref|XP_004310123.1|1.2e-2359.63PREDICTED: uncharacterized protein LOC101297903 [Fragaria vesca subsp. vesca][more]
gi|778689802|ref|XP_004152315.2|3.8e-2258.82PREDICTED: uncharacterized protein LOC101222996, partial [Cucumis sativus][more]
gi|700197830|gb|KGN52988.1|3.8e-2258.82hypothetical protein Csa_4G009890 [Cucumis sativus][more]
gi|2459433|gb|AAB80668.1|8.5e-2262.39hypothetical protein [Arabidopsis thaliana][more]
gi|30685734|ref|NP_180909.2|8.5e-2262.39uncharacterized protein [Arabidopsis thaliana][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g06480.1Cp4.1LG08g06480.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 54..75
scor
NoneNo IPR availablePANTHERPTHR14791BOMB/KIRA PROTEINScoord: 1..103
score: 4.3
NoneNo IPR availablePANTHERPTHR14791:SF27SUBFAMILY NOT NAMEDcoord: 1..103
score: 4.3

The following gene(s) are paralogous to this gene:

None