Cp4.1LG08g04890 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g04890
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDynein light chain 2, cytoplasmic
LocationCp4.1LG08 : 1217340 .. 1220106 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGGGGAACAAATTATACAGCTTCAGCCACAGGATATGCAAACAAGAAAAGATGGTGACTGCACTGGAGGGTACATGAAAGCTGGTAGAAACGGTTCAAATGATAAATAAAACTACAAAAATAATCCATATANCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTTCCATAGCCGTCAGTGATTCTTTCTCTTGAAATAACTACTCATAATCTCTTAGAAAATCTGTTCCTTAAGTAATTACGTCAGAATCTGTTTTGTTTTATTGTTGTTTAGGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTCTGTGAATCTCCAGCTTCTTCCTTAATTTTCCCTTTATCTCAGTCTGATGGATCAAATCGTTATGAATTTCTGTTGCTTTAGTCCCTTAGAAAAGATTGTGTTACCTCTAGTTCGATCTTTAGCTTATTTCCCCTACTGAAATGGAGATCTACCTTTTAATTCTGTTCTTTTTCGGGATTCAGACACCATTAGTCCGATTCTTCTTTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGCCTGCATAGGAAATTTTAGCCCAGTTGTGTTAAGTACATTGAAATTACATATATTCTTGCATCACTAGTTTAGTGGCTCTATTGGAGGAACTCTTTATTGAATTTGCTAGCTAATTCTCAGCTACAGCAATCTAAAACAATCTCAATGGATTCTGCTATGGTGGCAACCAGTGGGTGGGGGCTCCTCCATGGAACTTGATGATGGGTCCATCTAACTTAGGGGTACAGGACCGTTTGGAACTATACGAGTTGAATCTTAGGCTCAAGTGTTCTATAGGGACAAAGACGGATTTGTTTTGAATAGTACTTTTGGGTTCAAATCTTCCCATTGTTCTTTTGGCACTTATAAACTAGCTGACTTCACTGTGATATTGTCTCTTGAGTCATTCTGGTATCTGTAATCTATATGGTTCTGTTCTGTTTGCTCAATGAAAGGTAGGAATCGAGATATATGTCTCATGTTTAATTGAAGCATAAAATGTTCAGTTCTTGGTACTTTTGGGATGTAAGGGACTGCTTTGATGAGATACAGGAAGGTGATCTGCAATCTCTTTTTTTCTGTGTGCTGTTAGGGAACAGACAATTCTTATAGGCAAAAGGATAAAAGGTTGTGATCACACGGACCAAGAGCCTTGCTAATATAAGATTTAGAACATGCCATTCTAACGCTAAGTACTTTTAGCGTAATTTGGTATGTAACTTGAAAGTGGGCAGTGCTCCCTCTCTTTGTTTCCGTTACCTTATAGTGCCAGAAACGTTCCTTTATATATGGCCAATCTATTCATCGCAAGCCTTGAAACATCCCGGTGGTATTAGCGATCCATTTAGTTTTTTTCATTTTGGCTGAGCGAACTCAGTTGTTAGCAGTACACTCCTAGCTGTAAAAATTGCAAGCTCTTGTGGTAAGTATGTTAGCAGATGAAAATACCCTATAGTTCCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTCGGTCCTATGTCCACTTCTAGTAGAGATTGTCCTCTTTGAGCTTTCACTTTTGGGCTTCCCTTCTAGGTTTTAAAACGCATATGTTAGGAAAAGGTTTCTATGCTCTTATAAAGAAAGTTTCGTTCCCCTCTCCAACTGATGTGGGATCTCACAATCCACCTCTCATGGGGGATCAGCGTCCTTGGTGGCACATTACCCAGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGNTCTCATGGGGGCTCAGCGTCCTTGGTGGCACACTACCCAGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGCTAACAAATATTGTCCTTTTGGGCTTTCCCTCAAGGTTTTAAACTGGGTATGTTAGGGAGAAGTTTTCACACCCTTATAAACAATGCTTTGTTCCGCTATCCAACCGATGTGGGATCTCACACTATTTGTGTTTGTTTTTTTTTCTCCTGAATTAAATTAATATCTCAGACGATTCTATTTTCTGCTTTATGTTTCAGGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATGATTGTTTCTTCCCTTGGCAAACATGCCACCAACTACCTTGGCAAGCCTGCAATCACCATGCTACGATAAGTTCTTGTATGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGGAATTCAATCTGCCATTTACATAAATCTCTCAAAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGAGGAAATGCTTGTTTTTAACGGGTTTTAGGTGGTTAAACTTTCAATTACTGGCTCTGAAATAAGCCTTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTGTACTATTGCTAAAGAAAAGGAAGGACTTGAATTAAATGCTCTCATAAAATGAGATTCTGAAAGCAGATTTCTGTTGATTCATTACTATTATTACAATGTTTTGTTCTTA

mRNA sequence

AGGGGGGAACAAATTATACAGCTTCAGCCACAGGATATGCAAACAAGAAAAGATGGTGACTGCACTGGAGGGTACATGAAAGCTGGTAGAAACGGTTCAAATGATAAATAAAACTACAAAAATAATCCATATANCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTTCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATGATTGTTTCTTCCCTTGGCAAACATGCCACCAACTACCTTGGCAAGCCTGCAATCACCATGCTACGATAAGTTCTTGTATGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGGAATTCAATCTGCCATTTACATAAATCTCTCAAAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGAGGAAATGCTTGTTTTTAACGGGTTTTAGGTGGTTAAACTTTCAATTACTGGCTCTGAAATAAGCCTTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTGTACTATTGCTAAAGAAAAGGAAGGACTTGAATTAAATGCTCTCATAAAATGAGATTCTGAAAGCAGATTTCTGTTGATTCATTACTATTATTACAATGTTTTGTTCTTA

Coding sequence (CDS)

ATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTTCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGA

Protein sequence

MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKSG
Homology
[Close]
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
          M  DMQ++AVD +  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGSYVTHET H
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FVYFYLDQKAVLLFKSG 78
          F+YFYL Q A+LLFKSG
Sbjct: 73 FIYFYLGQVAILLFKSG 89

[Close]
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
          M  DMQ++AVD +  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGSYVTHET H
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FVYFYLDQKAVLLFKSG 78
          F+YFYL Q A+LLFKSG
Sbjct: 73 FIYFYLGQVAILLFKSG 89

[Close]
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
          M  DMQ++A+D +  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGSYVTHET H
Sbjct: 13 MSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FVYFYLDQKAVLLFKSG 78
          F+YFYL Q A+LLFKSG
Sbjct: 73 FIYFYLGQVAILLFKSG 89

[Close]
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
          M  DMQ++AVD +  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGSYVTHET H
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FVYFYLDQKAVLLFKSG 78
          F+YFYL Q A+LLFKSG
Sbjct: 73 FIYFYLGQVAILLFKSG 89

[Close]
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.6e-27
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 

Query: 1  MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
          M  DMQ++AVD +  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFGSYVTHET H
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72

Query: 61 FVYFYLDQKAVLLFKSG 78
          F+YFYL Q A+LLFKSG
Sbjct: 73 FIYFYLGQVAILLFKSG 89

[Close]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match: M5XSX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013502mg PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.4e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MF DMQKEAVDI+I AFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 43  MFQDMQKEAVDIAIGAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 102

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 103 FVYFYLDQKAVLLFKSG 119

[Close]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match: A0A0A0KCI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319760 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 7.1e-35
Identity = 68/77 (88.31%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MFGD+QK+A+D++IAAFEKHSVEKD+AE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 41  MFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 100

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 101 FVYFYLDQKAVLLFKSG 117

[Close]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match: A0A0A0LAM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159460 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-34
Identity = 68/77 (88.31%), Postives = 74/77 (96.10%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MF DMQKEA+D +IAAFEKHSVEKD+AEQIKKEFDK HGPTWHC++GRNFGSYVTHETNH
Sbjct: 44  MFTDMQKEAIDTAIAAFEKHSVEKDIAEQIKKEFDKNHGPTWHCIVGRNFGSYVTHETNH 103

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKA+LLFKSG
Sbjct: 104 FVYFYLDQKAILLFKSG 120

[Close]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match: A0A151T0F4_CAJCA (Dynein light chain 2, cytoplasmic OS=Cajanus cajan GN=KK1_022925 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-34
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           M  DMQKEAVDI++AAFEK++VEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 46  MISDMQKEAVDIAVAAFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 105

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 106 FVYFYLDQKAVLLFKSG 122

[Close]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match: A0A0R0I3M6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G043100 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-34
Identity = 69/77 (89.61%), Postives = 75/77 (97.40%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           M  DMQKEAVDI++AAFEK++VEKDVAEQIKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 46  MIPDMQKEAVDIAVAAFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 105

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 106 FVYFYLDQKAVLLFKSG 122

[Close]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 143.3 bits (360), Expect = 6.3e-35
Identity = 64/77 (83.12%), Postives = 73/77 (94.81%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           M  DMQKEA++I+I+AFEK+SVEKD+AE IKKEFDK+HG TWHC++GRNFGSYVTHETNH
Sbjct: 47  MKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNH 106

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 107 FVYFYLDQKAVLLFKSG 123

[Close]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-14
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 1 

Query: 1   MFGDMQKEA---VDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHE 60
           M G MQ  A     +++ + EK S  K +A  +KKEFDK +GP WHC++G +FGS+VTH 
Sbjct: 124 MPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHS 183

Query: 61  TNHFVYFYLDQKAVLLFKS 77
           T  F+YF +D+  VLLFK+
Sbjct: 184 TGCFIYFSMDKLYVLLFKT 201

[Close]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match: AT1G23220.1 (AT1G23220.1 Dynein light chain type 1 family protein)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-13
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 1 

Query: 24  KDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 77
           K +A  +KK+FD  +GP WHC++G +FGSYVTH T  F+YF +D+  VLLFK+
Sbjct: 69  KRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFKT 121

[Close]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-10
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 1 

Query: 5  MQKEAVDISIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFV 64
          MQ +A+ I+  + +   V     +A  IKKEFD+R+G  W CV+G NFG + TH    F+
Sbjct: 17 MQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGCFFTHSKGTFI 76

Query: 65 YFYLDQKAVLLFK 76
          YF+L     L+FK
Sbjct: 77 YFHLGTLNFLIFK 89

[Close]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-09
Identity = 27/73 (36.99%), Postives = 47/73 (64.38%), Query Frame = 1 

Query: 5  MQKEAVDISIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNHFV 64
          M+++A+ ++  A +   V +   +A  IKKEFD+ +G  W C++G +FGS+VTH +  F+
Sbjct: 17 MKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTHCSGCFI 76

Query: 65 YFYLDQKAVLLFK 76
          +F +    +LLFK
Sbjct: 77 HFSVGSLTILLFK 89

[Close]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match: gi|1009163279|ref|XP_015899880.1| (PREDICTED: dynein light chain 1, cytoplasmic [Ziziphus jujuba])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 72/77 (93.51%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MFGDMQKEAVDI+IAAFEK+SVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 44  MFGDMQKEAVDIAIAAFEKNSVEKDVAESIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 103

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 104 FVYFYLDQKAVLLFKSG 120

[Close]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match: gi|659117090|ref|XP_008458417.1| (PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 3.5e-35
Identity = 69/77 (89.61%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MFGD+QKEA+D++IAAFEKHSVEKD+AE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 41  MFGDVQKEAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 100

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 101 FVYFYLDQKAVLLFKSG 117

[Close]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match: gi|596190372|ref|XP_007223479.1| (hypothetical protein PRUPE_ppa013502mg [Prunus persica])

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MF DMQKEAVDI+I AFEKHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 43  MFQDMQKEAVDIAIGAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 102

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 103 FVYFYLDQKAVLLFKSG 119

[Close]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match: gi|449465567|ref|XP_004150499.1| (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.0e-34
Identity = 68/77 (88.31%), Postives = 76/77 (98.70%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MFGD+QK+A+D++IAAFEKHSVEKD+AE IKKEFDKRHGPTWHC++GRNFGSYVTHETNH
Sbjct: 41  MFGDVQKKAIDVAIAAFEKHSVEKDIAECIKKEFDKRHGPTWHCIVGRNFGSYVTHETNH 100

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 101 FVYFYLDQKAVLLFKSG 117

[Close]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match: gi|694322316|ref|XP_009352292.1| (PREDICTED: dynein light chain 2, cytoplasmic [Pyrus x bretschneideri])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-34
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 1 

Query: 1   MFGDMQKEAVDISIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSYVTHETNH 60
           MF DMQKEAVDI+I AFEKHSVEKDVAE IKKEFDK+HGPTWHC++GRNFGSYVTHETNH
Sbjct: 43  MFQDMQKEAVDIAIGAFEKHSVEKDVAEYIKKEFDKKHGPTWHCIVGRNFGSYVTHETNH 102

Query: 61  FVYFYLDQKAVLLFKSG 78
           FVYFYLDQKAVLLFKSG
Sbjct: 103 FVYFYLDQKAVLLFKSG 119

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g04890 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DYL2_MOUSE4.6e-2767.53Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1[more]
DYL2_HUMAN4.6e-2767.53Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1[more]
DYL1_CAEEL4.6e-2766.23Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1[more]
DYL2_BOVIN4.6e-2767.53Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1[more]
DYL2_RAT4.6e-2767.53Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1[more]
BLAST of Cp4.1LG08g04890 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XSX8_PRUPE5.4e-3592.21Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013502mg PE=4 SV=1[more]
A0A0A0KCI4_CUCSA7.1e-3588.31Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319760 PE=4 SV=1[more]
A0A0A0LAM1_CUCSA1.2e-3488.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159460 PE=4 SV=1[more]
A0A151T0F4_CAJCA1.6e-3489.61Dynein light chain 2, cytoplasmic OS=Cajanus cajan GN=KK1_022925 PE=4 SV=1[more]
A0A0R0I3M6_SOYBN2.7e-3489.61Uncharacterized protein OS=Glycine max GN=GLYMA_09G043100 PE=4 SV=1[more]
BLAST of Cp4.1LG08g04890 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15930.16.3e-3583.12 Dynein light chain type 1 family protein[more]
AT5G20110.12.8e-1448.10 Dynein light chain type 1 family protein[more]
AT1G23220.11.0e-1354.72 Dynein light chain type 1 family protein[more]
AT3G16120.12.4e-1041.10 Dynein light chain type 1 family protein[more]
AT4G27360.11.6e-0936.99 Dynein light chain type 1 family protein[more]
BLAST of Cp4.1LG08g04890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1009163279|ref|XP_015899880.1|1.6e-3593.51PREDICTED: dynein light chain 1, cytoplasmic [Ziziphus jujuba][more]
gi|659117090|ref|XP_008458417.1|3.5e-3589.61PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo][more]
gi|596190372|ref|XP_007223479.1|7.8e-3592.21hypothetical protein PRUPE_ppa013502mg [Prunus persica][more]
gi|449465567|ref|XP_004150499.1|1.0e-3488.31PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus][more]
gi|694322316|ref|XP_009352292.1|1.7e-3490.91PREDICTED: dynein light chain 2, cytoplasmic [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005875microtubule associated complex
GO:0030286dynein complex
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: INTERPRO
TermDefinition
IPR019763Dynein_light_1/2_CS
IPR001372Dynein_light_chain_typ-1/2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0044237 cellular metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0030286 dynein complex
cellular_component GO:0005875 microtubule associated complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g04890.1Cp4.1LG08g04890.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2GENE3DG3DSA:3.30.740.10coord: 3..77
score: 6.1
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 1..77
score: 3.3
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 3..76
score: 2.1
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 1..76
score: 1.6
IPR019763Dynein light chain, type 1/2, conserved sitePROSITEPS01239DYNEIN_LIGHT_1coord: 43..57
scor
NoneNo IPR availableunknownSSF54648DLCcoord: 3..77
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g04890Cucsa.252950Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g04890CmaCh06G015110Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g04890CmaCh08G012330Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g04890CmaCh14G016140Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g04890CmaCh17G003360Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g04890CmoCh17G003250Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g04890CmoCh08G012080Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g04890CmoCh14G016510Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g04890CmoCh06G015080Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g04890Cla009293Watermelon (97103) v1cpewmB853
Cp4.1LG08g04890Cla021753Watermelon (97103) v1cpewmB845
Cp4.1LG08g04890Csa3G159460Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g04890Csa6G319760Cucumber (Chinese Long) v2cpecuB875
Cp4.1LG08g04890MELO3C006677Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g04890MELO3C021317Melon (DHL92) v3.5.1cpemeB793
Cp4.1LG08g04890ClCG06G005020Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g04890ClCG05G006200Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g04890CSPI03G14570Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g04890Lsi05G015510Bottle gourd (USVL1VR-Ls)cpelsiB718
Cp4.1LG08g04890Lsi09G014420Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g04890MELO3C021317.2Melon (DHL92) v3.6.1cpemedB933
Cp4.1LG08g04890MELO3C006677.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g04890CsaV3_3G014810Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g04890Bhi01G000732Wax gourdcpewgoB1110
Cp4.1LG08g04890Bhi12G001811Wax gourdcpewgoB1095
Cp4.1LG08g04890CsGy6G016970Cucumber (Gy14) v2cgybcpeB887
Cp4.1LG08g04890CsGy3G014720Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g04890Carg19655Silver-seed gourdcarcpeB0396
Cp4.1LG08g04890Carg17332Silver-seed gourdcarcpeB0861
Cp4.1LG08g04890Carg18850Silver-seed gourdcarcpeB0987
Cp4.1LG08g04890Carg05515Silver-seed gourdcarcpeB0109
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g04890Cp4.1LG12g02830Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g04890Cp4.1LG17g00700Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g04890Cp4.1LG03g11550Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g04890Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG08g04890Cucurbita maxima (Rimu)cmacpeB410
Cp4.1LG08g04890Bottle gourd (USVL1VR-Ls)cpelsiB705
Cp4.1LG08g04890Watermelon (Charleston Gray)cpewcgB763
Cp4.1LG08g04890Silver-seed gourdcarcpeB0165