CmoCh06G015080 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G015080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Dynein light chain
Location	Cmo_Chr06 : 10778654 .. 10781173 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAGACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCTTCCTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACACGGACCAACGAAAACCTCCCCGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGTTAGTGCTTCTTTCTCTTGAAATAACTACTCATAATCTCTTAGAAAATCTGTTCCTTAAGTAATTACGTCAGAATCTGTTTTGTTTTATTGTTGTTTAGGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTCTGTGAATCTCTAGCTTCTTGCTTAATTTTCCCTTTATCTCAGTCTGATGGATCAAATCGTCATGAATTTCTGTTGCTTTAGTCCCTTAGAAGAGATTGTGTTACCTCTAGTTCGATCTTTAGCTTATTTCCCCTACTGAAATGGAGATCTACCTTTTAATTCTGTTCTTTTTCGGGATTCAGACACCATTAGCCCGATTCTTCTGTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGCCTGCATAGGCAGTTTTAGCCCAGTTGTGTTAAGTACATTGAAATTACATATATTCTTGCATCACTAGATTATTGGCTCTATTGGAGGAACTCTTTATTGAATTTGCTAGCTAATTCTCAGCTACAGCAATCTAAAACAATCTCAATGGATTCTGCTATGGTGGCAACCAGTGGGTGGGGGCTCCTCCATGAAACTTGATGATGGGGCCATCTAACTTTGGGGCATAGGACCGTTTGGAACTATGCGAGTTGAATCTTAGGCTCAAGTGTTCTATAGGGACAAAGACGGATTTGTTTTGAATAGTACTTTTGGGTTCAAATCTTCCCATTGTTCTTTTGGCACTTATAAACTAGCTGAATTCACTGTGATATTGTCTCTTGAGTCATTATGGTATCTGTAATCTATATGGTTCTGTTCTGTTTGCTCAATGAAAGGTAGGAATCAAGATATATGTCTCATGTTTAATTGAAGCATAAAATGTTCAGTTCTTGTTACTTTTCGGATGCAAGGGACTGCTTTGATGAGATACAGGAACTGCAATCTCTTTTTTTCTGTGTGCTGCTAGGGAAACAGACAATTCTTATAGGCAAAAGGATAAAAGCTAGTATAAGATTTAGAACATGCCATTCTAACGCTAAATACTTTAGCGTAATTTGGTATGTAACTTGTAAGTGGGCAGTGCTCCCTCTCTTCGTTTCCGTTACCTTATAGTGCCAGAAACGTTCCTTTATATGGCCAATCTATTCATCCCAAGCCTTGAAACATCCCGGTGGTATTAATGATCCATTTAGTTTTTTTCATTTTGGCTGAGCGAACTCAGTTGTTAGCAGTACACTCCTAGCTGTAAAAATTGCAAGCTCTTGTGGTTATTACGTTACTATAGTTCCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTCGGTCATATGTCCCTTTCTAGTAGAGATTGTCCTCTTTGGGCTTCCCTTCTAGGTTTTAAAACGCATATGTTAGGAAAAGGTTTCTACGCTCTTATAAAAAATGTTTCGTTTCCCTTTCCAACTGACGTGGGATCTCACAATCCACCTCTCATGGGGGCCAGCGTCCTTGGTGGCACACTACCCGGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGCTAACAAACACCCTTACAAGCAATGCTTTGTTCCGCTTTCCAACCGACGCGGGATCTCACACTATTTGTGTTTGTTTTTTTTTTTTTTTTTTCCTGAATTAAATTAATATCTCAGACGATTCTATTTTCTGCTTTATGTTTCAGGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATAATTGTTCTTCCCTTGGCAAGCCTGCAATCACAATGCTACGATAAGTTCTTGTATGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGAAATTCAATCTGCCATTACATAAATCTCTCAAAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGAGGGGATGCTTGTTTTTAATGGGTTTTTGGTGGTTAAACTTTCAATTATTGGCTCTGAAATAAGCCCTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTGTACTATTGCTAAAGAAAAGGAAG

mRNA sequence

AGAAGAGACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCTTCCTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACACGGACCAACGAAAACCTCCCCGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTTCCTATGTGACACATGAAACCAACCATTTTGTTTACTTTTACCTGGATCAAAAAGCAGTCTTACTCTTCAAATCTGGTTGATAATTGTTCTTCCCTTGGCAAGCCTGCAATCACAATGCTACGATAAGTTCTTGTATGTATAATCTATGTAAATCACTTGGTGTAGCATTTTTCAAATTATAACTAAATATATCACTGAGGGAGTAGATTAAATGAAATTCAATCTGCCATTACATAAATCTCTCAAAGGGTTTCCTTGTTGCTCTCATTAAAACAGAAGGTTGCAGTACAAAAAGGGAGGGGATGCTTGTTTTTAATGGGTTTTTGGTGGTTAAACTTTCAATTATTGGCTCTGAAATAAGCCCTGGAAGCCGATGATCTATAGAAGAGTAAATGCACCATTTTGTACTATTGCTAAAGAAAAGGAAG

Coding sequence (CDS)

ATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTTCCTATGTGA

Homology

[Close]

BLAST of CmoCh06G015080 vs. Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-18
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 30 VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRN 89
          V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRN
Sbjct: 2  VDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 90 FGS 93
          FGS
Sbjct: 62 FGS 64

[Close]

BLAST of CmoCh06G015080 vs. Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]

BLAST of CmoCh06G015080 vs. Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]

BLAST of CmoCh06G015080 vs. Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]

BLAST of CmoCh06G015080 vs. Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]

BLAST of CmoCh06G015080 vs. TrEMBL
Match: A0A0A0LAM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159460 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.5e-31
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MNHDSKR--SNPSPLMVKPES-EDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          MN DS+R  ++P P +VK ES +DRKPSS AP+ KKIVIKSADMF DMQKEA+D AIAAF
Sbjct: 1  MNQDSRRPTNHPPPPIVKLESTDDRKPSSPAPLSKKIVIKSADMFTDMQKEAIDTAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKD+AEQIKKEFDK HGPTWHC++GRNFGS
Sbjct: 61 EKHSVEKDIAEQIKKEFDKNHGPTWHCIVGRNFGS 95

[Close]

BLAST of CmoCh06G015080 vs. TrEMBL
Match: W9RYS3_9ROSA (Dynein light chain 2 OS=Morus notabilis GN=L484_007210 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-31
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKP---SSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          M+ D+K+S P  L  + +S+DRKP   S+AAP GK++VIKSADMFGDMQKEAVDIAIAAF
Sbjct: 1  MSDDAKKSVPGALSAQLKSDDRKPLPASAAAPAGKRVVIKSADMFGDMQKEAVDIAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKDVAE IKKEFDK+HGPTWHC++GRNFG+
Sbjct: 61 EKHSVEKDVAESIKKEFDKKHGPTWHCIVGRNFGN 95

[Close]

BLAST of CmoCh06G015080 vs. TrEMBL
Match: A0A0A0KCI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319760 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-31
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          M++D+KRS    L+VK  SEDRKP +    GKKIVIKSADMFGD+QK+A+D+AIAAFEKH
Sbjct: 1  MSNDAKRSIQGTLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKD+AE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of CmoCh06G015080 vs. TrEMBL
Match: M5XSX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013502mg PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.9e-31
Identity = 70/94 (74.47%), Postives = 78/94 (82.98%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPV--GKKIVIKSADMFGDMQKEAVDIAIAAFE 60
          M+ D+KRS P  L  KP S+DRKPS A     GK+++IKSADMF DMQKEAVDIAI AFE
Sbjct: 1  MSEDAKRSVPGALSAKPNSDDRKPSPAVTTATGKRVIIKSADMFQDMQKEAVDIAIGAFE 60

Query: 61 KHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          KHSVEKDVAE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 KHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGS 94

[Close]

BLAST of CmoCh06G015080 vs. TrEMBL
Match: A0A151T0F4_CAJCA (Dynein light chain 2, cytoplasmic OS=Cajanus cajan GN=KK1_022925 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.8e-30
Identity = 69/97 (71.13%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKP----SSAAPVG-KKIVIKSADMFGDMQKEAVDIAIA 60
          MN D+K+S P PL  +P  +DRKP    S+A PV  KK++IKSADM  DMQKEAVDIA+A
Sbjct: 1  MNEDAKKSTPGPLTARPGPDDRKPLSLPSTAPPVPPKKVIIKSADMISDMQKEAVDIAVA 60

Query: 61 AFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          AFEK++VEKDVAEQIKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 AFEKYNVEKDVAEQIKKEFDKRHGPTWHCIVGRNFGS 97

[Close]

BLAST of CmoCh06G015080 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 110.2 bits (274), Expect = 7.3e-25
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 1


Query: 20 EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEF 79
          +DR+ S     ++ P GK+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEF
Sbjct: 21 DDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEF 80

Query: 80 DKRHGPTWHCVIGRNFGS 93
          DK+HG TWHC++GRNFGS
Sbjct: 81 DKKHGATWHCIVGRNFGS 98

[Close]

BLAST of CmoCh06G015080 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
           I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHC++G +FGS
Sbjct: 119 ILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSFGS 177

[Close]

BLAST of CmoCh06G015080 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-06
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 1


Query: 33 KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNF 92
          K  ++  DM   MQ +A+ IA  + +   V     +A  IKKEFD+R+G  W CV+G NF
Sbjct: 5  KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

[Close]

BLAST of CmoCh06G015080 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 46.6 bits (109), Expect = 9.9e-06
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 1


Query: 33 KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNF 92
          K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W C++G +F
Sbjct: 5  KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

[Close]

BLAST of CmoCh06G015080 vs. NCBI nr
Match: gi|659117090|ref|XP_008458417.1| (PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 7.6e-32
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          M++D+KRS    LMVK  SEDRKP +    GKKIVIKSADMFGD+QKEA+D+AIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKD+AE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]

BLAST of CmoCh06G015080 vs. NCBI nr
Match: gi|449432870|ref|XP_004134221.1| (PREDICTED: dynein light chain 1, cytoplasmic isoform X1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-31
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MNHDSKR--SNPSPLMVKPES-EDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          MN DS+R  ++P P +VK ES +DRKPSS AP+ KKIVIKSADMF DMQKEA+D AIAAF
Sbjct: 1  MNQDSRRPTNHPPPPIVKLESTDDRKPSSPAPLSKKIVIKSADMFTDMQKEAIDTAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKD+AEQIKKEFDK HGPTWHC++GRNFGS
Sbjct: 61 EKHSVEKDIAEQIKKEFDKNHGPTWHCIVGRNFGS 95

[Close]

BLAST of CmoCh06G015080 vs. NCBI nr
Match: gi|778678939|ref|XP_011651062.1| (PREDICTED: dynein light chain 1, cytoplasmic isoform X2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-31
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MNHDSKR--SNPSPLMVKPES-EDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          MN DS+R  ++P P +VK ES +DRKPSS AP+ KKIVIKSADMF DMQKEA+D AIAAF
Sbjct: 1  MNQDSRRPTNHPPPPIVKLESTDDRKPSSPAPLSKKIVIKSADMFTDMQKEAIDTAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKD+AEQIKKEFDK HGPTWHC++GRNFGS
Sbjct: 61 EKHSVEKDIAEQIKKEFDKNHGPTWHCIVGRNFGS 95

[Close]

BLAST of CmoCh06G015080 vs. NCBI nr
Match: gi|703132521|ref|XP_010105145.1| (Dynein light chain 2 [Morus notabilis])

HSP 1 Score: 142.9 bits (359), Expect = 2.9e-31
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKP---SSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          M+ D+K+S P  L  + +S+DRKP   S+AAP GK++VIKSADMFGDMQKEAVDIAIAAF
Sbjct: 1  MSDDAKKSVPGALSAQLKSDDRKPLPASAAAPAGKRVVIKSADMFGDMQKEAVDIAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKDVAE IKKEFDK+HGPTWHC++GRNFG+
Sbjct: 61 EKHSVEKDVAESIKKEFDKKHGPTWHCIVGRNFGN 95

[Close]

BLAST of CmoCh06G015080 vs. NCBI nr
Match: gi|449465567|ref|XP_004150499.1| (PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 1


Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          M++D+KRS    L+VK  SEDRKP +    GKKIVIKSADMFGD+QK+A+D+AIAAFEKH
Sbjct: 1  MSNDAKRSIQGTLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKD+AE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

The following BLAST results are available for this feature:

BLAST of CmoCh06G015080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DYL1_CAEEL	4.8e-18	61.90	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1	[more]
DYL2_RAT	1.1e-17	63.93	Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1	[more]
DYL2_MOUSE	1.1e-17	63.93	Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1	[more]
DYL2_HUMAN	1.1e-17	63.93	Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1	[more]
DYL2_BOVIN	1.1e-17	63.93	Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1	[more]

BLAST of CmoCh06G015080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAM1_CUCSA	1.5e-31	76.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G159460 PE=4 SV=1	[more]
W9RYS3_9ROSA	2.0e-31	73.68	Dynein light chain 2 OS=Morus notabilis GN=L484_007210 PE=4 SV=1	[more]
A0A0A0KCI4_CUCSA	2.6e-31	73.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G319760 PE=4 SV=1	[more]
M5XSX8_PRUPE	5.9e-31	74.47	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013502mg PE=4 SV=1	[more]
A0A151T0F4_CAJCA	3.8e-30	71.13	Dynein light chain 2, cytoplasmic OS=Cajanus cajan GN=KK1_022925 PE=4 SV=1	[more]

BLAST of CmoCh06G015080 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15930.1	7.3e-25	66.67	Dynein light chain type 1 family protein	[more]
AT5G20110.1	1.1e-07	48.33	Dynein light chain type 1 family protein	[more]
AT3G16120.1	3.4e-06	40.98	Dynein light chain type 1 family protein	[more]
AT4G27360.1	9.9e-06	37.10	Dynein light chain type 1 family protein	[more]

BLAST of CmoCh06G015080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117090\|ref\|XP_008458417.1\|	7.6e-32	76.09	PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo]	[more]
gi\|449432870\|ref\|XP_004134221.1\|	2.2e-31	76.84	PREDICTED: dynein light chain 1, cytoplasmic isoform X1 [Cucumis sativus]	[more]
gi\|778678939\|ref\|XP_011651062.1\|	2.2e-31	76.84	PREDICTED: dynein light chain 1, cytoplasmic isoform X2 [Cucumis sativus]	[more]
gi\|703132521\|ref\|XP_010105145.1\|	2.9e-31	73.68	Dynein light chain 2 [Morus notabilis]	[more]
gi\|449465567\|ref\|XP_004150499.1\|	3.8e-31	73.91	PREDICTED: dynein light chain 1, cytoplasmic-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001372	Dynein_light_chain_typ-1/2

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G015080.1	CmoCh06G015080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	GENE3D	G3DSA:3.30.740.10		coord: 32..92 score: 2.4
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 33..92 score: 1.8
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 33..92 score: 1.1
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 29..95 score: 1.0
None	No IPR available	unknown	SSF54648	DLC	coord: 31..92 score: 7.06

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G015080	Cucsa.252950	Cucumber (Gy14) v1	cgycmoB0718
CmoCh06G015080	CmaCh17G003360	Cucurbita maxima (Rimu)	cmacmoB362
CmoCh06G015080	CmaCh06G015110	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G015080	CmaCh08G012330	Cucurbita maxima (Rimu)	cmacmoB910
CmoCh06G015080	CmaCh14G016140	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G015080	Cla009293	Watermelon (97103) v1	cmowmB802
CmoCh06G015080	Cla021753	Watermelon (97103) v1	cmowmB793
CmoCh06G015080	Csa3G159460	Cucumber (Chinese Long) v2	cmocuB806
CmoCh06G015080	MELO3C006677	Melon (DHL92) v3.5.1	cmomeB755
CmoCh06G015080	MELO3C021317	Melon (DHL92) v3.5.1	cmomeB738
CmoCh06G015080	ClCG06G005020	Watermelon (Charleston Gray)	cmowcgB746
CmoCh06G015080	ClCG05G006200	Watermelon (Charleston Gray)	cmowcgB743
CmoCh06G015080	CSPI03G14570	Wild cucumber (PI 183967)	cmocpiB814
CmoCh06G015080	Lsi05G015510	Bottle gourd (USVL1VR-Ls)	cmolsiB752
CmoCh06G015080	Lsi09G014420	Bottle gourd (USVL1VR-Ls)	cmolsiB733
CmoCh06G015080	Cp4.1LG03g11550	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G015080	Cp4.1LG17g00700	Cucurbita pepo (Zucchini)	cmocpeB776
CmoCh06G015080	Cp4.1LG08g04890	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G015080	MELO3C006677.2	Melon (DHL92) v3.6.1	cmomedB857
CmoCh06G015080	MELO3C021317.2	Melon (DHL92) v3.6.1	cmomedB840
CmoCh06G015080	CsaV3_3G014810	Cucumber (Chinese Long) v3	cmocucB0953
CmoCh06G015080	Cla97C06G114500	Watermelon (97103) v2	cmowmbB837
CmoCh06G015080	Cla97C05G087750	Watermelon (97103) v2	cmowmbB833
CmoCh06G015080	Bhi01G000732	Wax gourd	cmowgoB1005
CmoCh06G015080	Bhi12G001811	Wax gourd	cmowgoB1000
CmoCh06G015080	CsGy3G014720	Cucumber (Gy14) v2	cgybcmoB401
CmoCh06G015080	Carg18850	Silver-seed gourd	carcmoB0959
CmoCh06G015080	Carg17332	Silver-seed gourd	carcmoB0825
CmoCh06G015080	Carg19655	Silver-seed gourd	carcmoB0390
CmoCh06G015080	Carg05515	Silver-seed gourd	carcmoB0102

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G015080	CmoCh14G016510	Cucurbita moschata (Rifu)	cmocmoB224
CmoCh06G015080	CmoCh17G003250	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh06G015080	CmoCh08G012080	Cucurbita moschata (Rifu)	cmocmoB484

The following block(s) are covering this gene:

None