Carg17332 (gene) Silver-seed gourd

Overview
NameCarg17332
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDynein light chain
LocationCucurbita_argyrosperma_scaffold_092 : 72796 .. 74777 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCGTCTTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACACGGACCAACGAAAACCTCCCTGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGTTAGTAATTCTTTCTCTTGAAATAACTACTCATAATCTCTTAGAAAATCTGTTCCTTAAGTAATTACGTCAGAATCTGTTTTGTTTTATTGTTGTTTAGGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTGTGAATCTCTAGCTTCTTGGTTAATTTTCCCTTTATCTCAGTCTGATGGATCAAATCGTCATGAATTTCTGTTGCTTTAGTCCCTTAGAAGAGATTTTGTTACCTCTAGTTCGATCATTAGCTTATTTCCCCTACTGAAATGGAGATCTACCTTTTAATTCTGTTCTTTTTCGGGATTCAGACACCATTAGCCCGATTCTTCTGTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGCCTGCATAGGCAGTTTTAGCCCAGTTGTGTTAAGTACATTGAAATTACATATATTCTTGCATCACTAGATTAGTGGCTCTATTGGAGGAACTCTTTATTGAATTTGCTAGCTAATTCTCAGCTACAGCAATCTAAAACAATCTCAATGGATTCTGCTACGGTGTCAACCAGTGGGTGGGGGCTCCTCCATGAAACTTGATGATGGGGCCATCTAACTTTGGGGTATAGGACCGTTTGGAACTATGCGAGTTGAATCTTAGGCTCAAGTGTTCTATAGGGACAAAGACGGATTTGTTTTGAATAGTACTTTTGGGTTCAAATCTTCCCATTGTTCTTTTGGCACTTATAAACTAGCTGAATTCACTGTGATATTGTCTCTTGAGTCATTATGGTATCTGTAATCTATATGGTTCTGTTCTGTTTGCTCAATGAAAGGTAGGAATCAAGATATATGTCTCATGTTTAATTGAAGCATAAAATGTTCAGTTCTTGTTACTTTAGGGATGCAAGGGACTGCTTTGATGAGATACAGGAACTGCAATCTCTTTTTTTCTGTGTGCTGCTAGGGAAACAGACAATTCTTATAGGCAAAAGGATAAAAGCTAGTATAAGATTTAGAACATGCCATTCTAACGCTAAATACTTAAGCGTAATTTGGTATGTAACTTGTAAGTGGGCAGTGCTCCCTCTCTTCGTTTCCGTTACCTTATAGTGCCAGAAACGTTCCTTTATATGGCCAATCTATTCATCCCAAGCCTTGAAACATCCCGGTGGTATTAGTGATCCATTTAGTTTTTTTCATTTTGGCTGAGCGAACTCAGTTGTTAGCAGTACACTCCTAGCTGTAAAAATTGCAAGCTCTTGTGGTTATTATGTTACTGTAGTTCCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTCGGTCGTATGTCCATTTCTAGTAGAGATTATCCTCTTTGGGCTTCCCTTCTAGGTTCTAAAATACATATGTTAGGAAAAGGTTTCTACGCTCTTATAAAAAATGTTTTGTTTCCCTTTCCAACTGACGTGGGATCTCACAATCCACCTCTCATGGGGGCCAGCGTCCTTGGTGGCACACTACCCGGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGCTAACAAATATTGTTCTTTTGAGCTTTCTCTTTTGCGCTTTCCCTC

mRNA sequence

ACGCAGAGTGATAGTGGTTGAGAGCGAGAGCCTTTCTTCTCGCTCTTCTCCTTCTTCGTCTTCTCTCCCTGTTCATCTCTTACCAGTTGCTACCAAAAAACACGGACCAACGAAAACCTCCCTGGCATCATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTGTGAATCTCTAGCTTCTTGGTTAATTTTCCCTTTATCTCAGTCTGATGGATCAAATCGTCATGAATTTCTGTTGCTTTAGTCCCTTAGAAGAGATTTTGTTACCTCTAGTTCGATCATTAGCTTATTTCCCCTACTGAAATGGAGATCTACCTTTTAATTCTGTTCTTTTTCGGGATTCAGACACCATTAGCCCGATTCTTCTGTCAGGCTCCACCACTTAGCAGGAGCAAGATTTGCCTGCATAGGCAGTTTTAGCCCAGTTGTGTTAAGTACATTGAAATTACATATATTCTTGCATCACTAGATTAGTGGCTCTATTGGAGGAACTCTTTATTGAATTTGCTAGCTAATTCTCAGCTACAGCAATCTAAAACAATCTCAATGGATTCTGCTACGGTGTCAACCAGTGGGTGGGGGCTCCTCCATGAAACTTGATGATGGGGCCATCTAACTTTGGGGTATAGGACCGTTTGGAACTATGCGAGTTGAATCTTAGGCTCAAGTGTTCTATAGGGACAAAGACGGATTTGTTTTGAATAGTACTTTTGGGTTCAAATCTTCCCATTGTTCTTTTGGCACTTATAAACTAGCTGAATTCACTGTGATATTGTCTCTTGAGTCATTATGGTATCTGTAATCTATATGGTTCTGTTCTGTTTGCTCAATGAAAGGTAGGAATCAAGATATATGTCTCATGTTTAATTGAAGCATAAAATGTTCAGTTCTTGTTACTTTAGGGATGCAAGGGACTGCTTTGATGAGATACAGGAACTGCAATCTCTTTTTTTCTGTGTGCTGCTAGGGAAACAGACAATTCTTATAGGCAAAAGGATAAAAGCTAGTATAAGATTTAGAACATGCCATTCTAACGCTAAATACTTAAGCGTAATTTGGTATGTAACTTGTAAGTGGGCAGTGCTCCCTCTCTTCGTTTCCGTTACCTTATAGTGCCAGAAACGTTCCTTTATATGGCCAATCTATTCATCCCAAGCCTTGAAACATCCCGGTGGTATTAGTGATCCATTTAGTTTTTTTCATTTTGGCTGAGCGAACTCAGTTGTTAGCAGTACACTCCTAGCTGTAAAAATTGCAAGCTCTTGTGGTTATTATGTTACTGTAGTTCCAGTTGCTCCCGTATCTCCAAGAATGTTGCAGTGCATTGTCTTGTTCTTGACTATTGAGCTTTATTCGGTCGTATGTCCATTTCTAGTAGAGATTATCCTCTTTGGGCTTCCCTTCTAGGTTCTAAAATACATATGTTAGGAAAAGGTTTCTACGCTCTTATAAAAAATGTTTTGTTTCCCTTTCCAACTGACGTGGGATCTCACAATCCACCTCTCATGGGGGCCAGCGTCCTTGGTGGCACACTACCCGGTGCTTGGCTCTGATACCATTTGTAATGGCTCAATCCCACCGCTAACAAATATTGTTCTTTTGAGCTTTCTCTTTTGCGCTTTCCCTC

Coding sequence (CDS)

ATGAACCACGACTCCAAGCGAAGCAATCCTTCTCCTCTAATGGTCAAGCCTGAATCTGAGGATCGCAAACCCTCCTCTGCTGCTCCTGTCGGCAAGAAAATCGTCATCAAGAGCGCTGATATGTTCGGAGACATGCAGAAGGAGGCTGTCGACATTGCCATAGCCGCATTTGAGAAGCATTCCGTCGAGAAGGATGTCGCCGAGCAGATTAAGAAGGAGTTCGATAAGCGGCATGGTCCGACCTGGCATTGCGTCATCGGTCGTAATTTTGGTAGCGTATTTCACTCTCTGTGA

Protein sequence

MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL
Homology
[Close]
BLAST of Carg17332 vs. NCBI nr
Match: XP_022945423.1 (dynein light chain 1, cytoplasmic-like [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Sbjct: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 92

[Close]
BLAST of Carg17332 vs. NCBI nr
Match: XP_022973755.1 (dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1  MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS
Sbjct: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 91

[Close]
BLAST of Carg17332 vs. NCBI nr
Match: XP_022973756.1 (dynein light chain 1, cytoplasmic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          MNHDSKRSNPS LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH
Sbjct: 1  MNHDSKRSNPS-LMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNF 91
          SVEKDVAEQIKKEFDKRHGPTWHCVIGRNF
Sbjct: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNF 89

[Close]
BLAST of Carg17332 vs. NCBI nr
Match: XP_022138126.1 (dynein light chain 1, cytoplasmic [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 5.3e-37
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          MN D+KR+NP+ LMVKPESEDRKPSSA P+ +K+VIKSADMFGDMQKEAVDIAIAAFEK+
Sbjct: 1  MNQDAKRTNPASLMVKPESEDRKPSSAPPLARKVVIKSADMFGDMQKEAVDIAIAAFEKY 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          +VEKDVAEQIK+EFDKRHGPTWHC++GRNFGS
Sbjct: 61 AVEKDVAEQIKREFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Carg17332 vs. NCBI nr
Match: XP_022979977.1 (dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima])

HSP 1 Score: 162.5 bits (410), Expect = 7.0e-37
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 0 

Query: 1   MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
           MN +SKRSNP+PLMVKPESEDRK SS A   KKIVIKSADMFG MQKEAVDIAIAAFEKH
Sbjct: 29  MNQESKRSNPNPLMVKPESEDRKASSVAAAAKKIVIKSADMFGHMQKEAVDIAIAAFEKH 88

Query: 61  SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
           SVEKDVAEQIKKEFD+RHGPTWHC++GRNFGS
Sbjct: 89  SVEKDVAEQIKKEFDQRHGPTWHCIVGRNFGS 120

[Close]
BLAST of Carg17332 vs. TAIR10
Match: AT4G15930.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 109.8 bits (273), Expect = 9.7e-25
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = 0 

Query: 20 EDRKPS-----SAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEF 79
          +DR+ S     ++ P GK+ VIKSADM  DMQKEA++IAI+AFEK+SVEKD+AE IKKEF
Sbjct: 21 DDRRSSLPEVEASPPAGKRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEF 80

Query: 80 DKRHGPTWHCVIGRNFGS 93
          DK+HG TWHC++GRNFGS
Sbjct: 81 DKKHGATWHCIVGRNFGS 98

[Close]
BLAST of Carg17332 vs. TAIR10
Match: AT5G20110.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 53.5 bits (127), Expect = 8.3e-08
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0 

Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 95
           I +ADM G MQ  A   A   + + EK S  K +A  +KKEFDK +GP WHC++G +FGS
Sbjct: 119 ILAADMPGFMQAHAFRCARMTLDSLEKFS-SKHMAFNLKKEFDKGYGPAWHCIVGSSFGS 178

Query: 96  -VFHS 97
            V HS
Sbjct: 179 FVTHS 182

[Close]
BLAST of Carg17332 vs. TAIR10
Match: AT3G16120.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 0 

Query: 33 KIVIKSADMFGDMQKEAVDIAIAAFEKHSV--EKDVAEQIKKEFDKRHGPTWHCVIGRNF 92
          K  ++  DM   MQ +A+ IA  + +   V     +A  IKKEFD+R+G  W CV+G NF
Sbjct: 5  KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 93 GSVF 95
          G  F
Sbjct: 65 GCFF 68

[Close]
BLAST of Carg17332 vs. TAIR10
Match: AT4G27360.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.3e-05
Identity = 23/62 (37.10%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 33 KIVIKSADMFGDMQKEAVDIAIAAFEKHSVEK--DVAEQIKKEFDKRHGPTWHCVIGRNF 92
          K V+   DM   M+++A+ +A  A +   V +   +A  IKKEFD+ +G  W C++G +F
Sbjct: 5  KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

[Close]
BLAST of Carg17332 vs. TAIR10
Match: AT1G23220.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 45.1 bits (105), Expect = 2.9e-05
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 36  IKSADMFGDMQKEAVDIA---IAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 95
           ++++DM    Q  A  ++   + A    +  K +A  +KK+FD  +GP WHC++G +FGS
Sbjct: 38  VRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGS 97

Query: 96  -VFHS 97
            V HS
Sbjct: 98  YVTHS 102

[Close]
BLAST of Carg17332 vs. Swiss-Prot
Match: sp|Q22799|DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-18
Identity = 39/63 (61.90%), Postives = 52/63 (82.54%), Query Frame = 0 

Query: 30 VGKKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRN 89
          V +K VIK+ADM  DMQ++A+D A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRN
Sbjct: 2  VDRKAVIKNADMSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRN 61

Query: 90 FGS 93
          FGS
Sbjct: 62 FGS 64

[Close]
BLAST of Carg17332 vs. Swiss-Prot
Match: sp|Q3MHR3|DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]
BLAST of Carg17332 vs. Swiss-Prot
Match: sp|Q96FJ2|DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]
BLAST of Carg17332 vs. Swiss-Prot
Match: sp|Q9D0M5|DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]
BLAST of Carg17332 vs. Swiss-Prot
Match: sp|Q78P75|DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-17
Identity = 39/61 (63.93%), Postives = 51/61 (83.61%), Query Frame = 0 

Query: 32 KKIVIKSADMFGDMQKEAVDIAIAAFEKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFG 91
          +K VIK+ADM  DMQ++AVD A  A EK+++EKD+A  IKKEFDK++ PTWHC++GRNFG
Sbjct: 4  RKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFG 63

Query: 92 S 93
          S
Sbjct: 64 S 64

[Close]
BLAST of Carg17332 vs. TrEMBL
Match: tr|W9RYS3|W9RYS3_9ROSA (Dynein light chain OS=Morus notabilis OX=981085 GN=L484_007210 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.6e-32
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0 

Query: 1   MNHDSKRSNPSPLMVKPESEDRKP---SSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
           M+ D+K+S P  L  + +S+DRKP   S+AAP GK++VIKSADMFGDMQKEAVDIAIAAF
Sbjct: 1   MSDDAKKSVPGALSAQLKSDDRKPLPASAAAPAGKRVVIKSADMFGDMQKEAVDIAIAAF 60

Query: 61  EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFHSL 98
           EKHSVEKDVAE IKKEFDK+HGPTWHC++GRNFG+ F  L
Sbjct: 61  EKHSVEKDVAESIKKEFDKKHGPTWHCIVGRNFGNPFSLL 100

[Close]
BLAST of Carg17332 vs. TrEMBL
Match: tr|A0A1S3C7T8|A0A1S3C7T8_CUCME (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-31
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          M++D+KRS    LMVK  SEDRKP +    GKKIVIKSADMFGD+QKEA+D+AIAAFEKH
Sbjct: 1  MSNDAKRSIQGNLMVKSVSEDRKPPAVTATGKKIVIKSADMFGDVQKEAIDVAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKD+AE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Carg17332 vs. TrEMBL
Match: tr|A0A0A0LAM1|A0A0A0LAM1_CUCSA (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G159460 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.8e-31
Identity = 73/95 (76.84%), Postives = 83/95 (87.37%), Query Frame = 0 

Query: 1  MNHDSKR--SNPSPLMVKPES-EDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAF 60
          MN DS+R  ++P P +VK ES +DRKPSS AP+ KKIVIKSADMF DMQKEA+D AIAAF
Sbjct: 1  MNQDSRRPTNHPPPPIVKLESTDDRKPSSPAPLSKKIVIKSADMFTDMQKEAIDTAIAAF 60

Query: 61 EKHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          EKHSVEKD+AEQIKKEFDK HGPTWHC++GRNFGS
Sbjct: 61 EKHSVEKDIAEQIKKEFDKNHGPTWHCIVGRNFGS 95

[Close]
BLAST of Carg17332 vs. TrEMBL
Match: tr|A0A0A0KCI4|A0A0A0KCI4_CUCSA (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_6G319760 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.5e-31
Identity = 68/92 (73.91%), Postives = 80/92 (86.96%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSAAPVGKKIVIKSADMFGDMQKEAVDIAIAAFEKH 60
          M++D+KRS    L+VK  SEDRKP +    GKKIVIKSADMFGD+QK+A+D+AIAAFEKH
Sbjct: 1  MSNDAKRSIQGTLLVKSVSEDRKPPAVTTTGKKIVIKSADMFGDVQKKAIDVAIAAFEKH 60

Query: 61 SVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGS 93
          SVEKD+AE IKKEFDKRHGPTWHC++GRNFGS
Sbjct: 61 SVEKDIAECIKKEFDKRHGPTWHCIVGRNFGS 92

[Close]
BLAST of Carg17332 vs. TrEMBL
Match: tr|A0A251QX00|A0A251QX00_PRUPE (Dynein light chain OS=Prunus persica OX=3760 GN=PRUPE_1G132800 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.4e-31
Identity = 70/97 (72.16%), Postives = 80/97 (82.47%), Query Frame = 0 

Query: 1  MNHDSKRSNPSPLMVKPESEDRKPSSA--APVGKKIVIKSADMFGDMQKEAVDIAIAAFE 60
          M+ D+KRS P  L  KP S+DRKPS A     GK+++IKSADMF DMQKEAVDIAI AFE
Sbjct: 1  MSEDAKRSVPGALSAKPNSDDRKPSPAVTTATGKRVIIKSADMFQDMQKEAVDIAIGAFE 60

Query: 61 KHSVEKDVAEQIKKEFDKRHGPTWHCVIGRNFGSVFH 96
          KHSVEKDVAE IKKEFDKRHGPTWHC++GRNFG+ F+
Sbjct: 61 KHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGNPFN 97

The following BLAST results are available for this feature:
BLAST of Carg17332 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945423.11.3e-43100.00dynein light chain 1, cytoplasmic-like [Cucurbita moschata][more]
XP_022973755.11.2e-4198.91dynein light chain 1, cytoplasmic-like isoform X1 [Cucurbita maxima][more]
XP_022973756.12.3e-4098.89dynein light chain 1, cytoplasmic-like isoform X2 [Cucurbita maxima][more]
XP_022138126.15.3e-3783.70dynein light chain 1, cytoplasmic [Momordica charantia][more]
XP_022979977.17.0e-3786.96dynein 8 kDa light chain, flagellar outer arm-like [Cucurbita maxima][more]
BLAST of Carg17332 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G15930.19.7e-2566.67Dynein light chain type 1 family protein[more]
AT5G20110.18.3e-0849.23Dynein light chain type 1 family protein[more]
AT3G16120.11.2e-0640.63Dynein light chain type 1 family protein[more]
AT4G27360.11.3e-0537.10Dynein light chain type 1 family protein[more]
AT1G23220.12.9e-0535.38Dynein light chain type 1 family protein[more]
BLAST of Carg17332 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q22799|DYL1_CAEEL6.5e-1861.90Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=... [more]
sp|Q3MHR3|DYL2_BOVIN1.4e-1763.93Dynein light chain 2, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL2 PE=3 SV=1[more]
sp|Q96FJ2|DYL2_HUMAN1.4e-1763.93Dynein light chain 2, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL2 PE=1 SV=1[more]
sp|Q9D0M5|DYL2_MOUSE1.4e-1763.93Dynein light chain 2, cytoplasmic OS=Mus musculus OX=10090 GN=Dynll2 PE=1 SV=1[more]
sp|Q78P75|DYL2_RAT1.4e-1763.93Dynein light chain 2, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Dynll2 PE=1 S... [more]
BLAST of Carg17332 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W9RYS3|W9RYS3_9ROSA7.6e-3272.00Dynein light chain OS=Morus notabilis OX=981085 GN=L484_007210 PE=3 SV=1[more]
tr|A0A1S3C7T8|A0A1S3C7T8_CUCME1.3e-3176.09Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103497840 PE=3 SV=1[more]
tr|A0A0A0LAM1|A0A0A0LAM1_CUCSA3.8e-3176.84Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_3G159460 PE=3 SV=1[more]
tr|A0A0A0KCI4|A0A0A0KCI4_CUCSA6.5e-3173.91Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_6G319760 PE=3 SV=1[more]
tr|A0A251QX00|A0A251QX00_PRUPE8.4e-3172.16Dynein light chain OS=Prunus persica OX=3760 GN=PRUPE_1G132800 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf
IPR001372Dynein_light_chain_typ-1/2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg17332-RACarg17332-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 29..96
e-value: 1.7E-26
score: 104.0
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 33..94
e-value: 1.1E-23
score: 83.2
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 21..93
IPR037177Dynein light chain superfamilyGENE3DG3DSA:3.30.740.10coord: 30..96
e-value: 4.0E-26
score: 92.9
IPR037177Dynein light chain superfamilySUPERFAMILYSSF54648DLCcoord: 31..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg17332Cla021753Watermelon (97103) v1carwmB0603
Carg17332Cla009293Watermelon (97103) v1carwmB0604
Carg17332Csa3G159460Cucumber (Chinese Long) v2carcuB0633
Carg17332MELO3C006677Melon (DHL92) v3.5.1carmeB0610
Carg17332MELO3C021317Melon (DHL92) v3.5.1carmeB0609
Carg17332ClCG05G006200Watermelon (Charleston Gray)carwcgB0588
Carg17332ClCG06G005020Watermelon (Charleston Gray)carwcgB0589
Carg17332CSPI03G14570Wild cucumber (PI 183967)carcpiB0639
Carg17332Cucsa.252950Cucumber (Gy14) v1carcgyB0681
Carg17332CmaCh06G015110Cucurbita maxima (Rimu)carcmaB0849
Carg17332CmaCh08G012330Cucurbita maxima (Rimu)carcmaB0850
Carg17332CmaCh14G016140Cucurbita maxima (Rimu)carcmaB0847
Carg17332CmaCh17G003360Cucurbita maxima (Rimu)carcmaB0848
Carg17332CmoCh14G016510Cucurbita moschata (Rifu)carcmoB0823
Carg17332CmoCh06G015080Cucurbita moschata (Rifu)carcmoB0825
Carg17332CmoCh08G012080Cucurbita moschata (Rifu)carcmoB0826
Carg17332CmoCh17G003250Cucurbita moschata (Rifu)carcmoB0824
Carg17332Lsi09G014420Bottle gourd (USVL1VR-Ls)carlsiB550
Carg17332Lsi05G015510Bottle gourd (USVL1VR-Ls)carlsiB552
Carg17332Cp4.1LG03g11550Cucurbita pepo (Zucchini)carcpeB0860
Carg17332Cp4.1LG17g00700Cucurbita pepo (Zucchini)carcpeB0859
Carg17332Cp4.1LG12g02830Cucurbita pepo (Zucchini)carcpeB0857
Carg17332Cp4.1LG08g04890Cucurbita pepo (Zucchini)carcpeB0861
Carg17332CsGy3G014720Cucumber (Gy14) v2carcgybB0605
Carg17332MELO3C006677.2Melon (DHL92) v3.6.1carmedB0616
Carg17332MELO3C021317.2Melon (DHL92) v3.6.1carmedB0615
Carg17332CsaV3_3G014810Cucumber (Chinese Long) v3carcucB0640
Carg17332Cla97C05G087750Watermelon (97103) v2carwmbB0631
Carg17332Cla97C06G114500Watermelon (97103) v2carwmbB0632
Carg17332Bhi12G001811Wax gourdcarwgoB0720
Carg17332Bhi01G000732Wax gourdcarwgoB0722
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg17332Carg05515Silver-seed gourdcarcarB083
Carg17332Carg18850Silver-seed gourdcarcarB543
The following block(s) are covering this gene:

None