Cp4.1LG08g03700 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g03700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 1895315 .. 1895854 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

mRNA sequence

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

Coding sequence (CDS)

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

Protein sequence

MSCTSPFSFTLMRKTLPIYYSSSSPSSFLSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPPVAMF
BLAST of Cp4.1LG08g03700 vs. Swiss-Prot
Match: GP1_CHLRE (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii GN=GP1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.0e-06
Identity = 58/127 (45.67%), Postives = 62/127 (48.82%), Query Frame = 1

Query: 52  SPEFPQKSPI--PEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDL 111
           SP  P  SP   P P+ P   P +  SPA     P   PP+ P P  P  PSP PP P  
Sbjct: 175 SPTPPSPSPPVPPSPAPPSPAPPVPPSPA----PPSPAPPVPPSPAPPSPPSPAPPSPPS 234

Query: 112 PVPPVPSPPGIDVPIPPH-KPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSP 171
           P PP PSPP    P+PP   PP   PP P  P P P   PP PP  PPPRPP P     P
Sbjct: 235 PAPPSPSPPAPPSPVPPSPAPPSPAPPSPKPPAPPP---PPSPPPPPPPRPPFPANTPMP 294

Query: 172 SSPDIPP 176
            SP  PP
Sbjct: 295 PSPPSPP 294

BLAST of Cp4.1LG08g03700 vs. TrEMBL
Match: A0A0A0L4M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 116/182 (63.74%), Postives = 128/182 (70.33%), Query Frame = 1

Query: 1   MSCTSPFSFTLMRKTLPIYYSSSSPSSF----LSHGEFLPFKN-SAPLSRFLLVGDSPEF 60
           MS TS FSFTL+RKTLP YY  SS  +      SH +FLPF    A LS  LL GDSPEF
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSPEF 64

Query: 61  PQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVP 120
           P+  P+P PS PLE+PQ S  P IDP TP ELP ITP P+FP    P PPGP+ P PP+P
Sbjct: 65  PEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPLP 124

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSPS 172
           SPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS S
Sbjct: 125 SPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSAS 182

BLAST of Cp4.1LG08g03700 vs. TrEMBL
Match: A0A166H4D3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-06
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 1

Query: 41  APLSRFLLVGDSPEFPQKSPIPEPSVPLEVPQISISPAIDPITPPELPPIT---PGPDFP 100
           A  +R +  G  PEFP+K  I +P  P E+P     P   P+ P E P  +    GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 101 GLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 160
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 161 RPPGPEILT 167
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

BLAST of Cp4.1LG08g03700 vs. NCBI nr
Match: gi|700201797|gb|KGN56930.1| (hypothetical protein Csa_3G144200 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 116/182 (63.74%), Postives = 128/182 (70.33%), Query Frame = 1

Query: 1   MSCTSPFSFTLMRKTLPIYYSSSSPSSF----LSHGEFLPFKN-SAPLSRFLLVGDSPEF 60
           MS TS FSFTL+RKTLP YY  SS  +      SH +FLPF    A LS  LL GDSPEF
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSPEF 64

Query: 61  PQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVP 120
           P+  P+P PS PLE+PQ S  P IDP TP ELP ITP P+FP    P PPGP+ P PP+P
Sbjct: 65  PEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPLP 124

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSPS 172
           SPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS S
Sbjct: 125 SPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSAS 182

BLAST of Cp4.1LG08g03700 vs. NCBI nr
Match: gi|645235327|ref|XP_008224213.1| (PREDICTED: vegetative cell wall protein gp1 [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 5.8e-09
Identity = 80/191 (41.88%), Postives = 104/191 (54.45%), Query Frame = 1

Query: 2   SCTSPFSFTLMRKTLPIYYSSSSPSSFLSHGEFLPFKNS--APLSRFLLVGDSPE----F 61
           S  S FS TL+R+T+P   S++S +S  S  +FL  K     PL+  +L    P+    +
Sbjct: 4   SSISSFSSTLIRRTIPFCSSTTSTTSATS-SQFLSPKRKPICPLAYHILARALPDPPDQY 63

Query: 62  PQKSP------IP----EPSVPLEVPQISISPAIDP--ITPPELPPITPGPDFPGLPSPL 121
           P KSP      +P    +PS P EVP IS SP +DP  + PPE+ P  P  D    P P 
Sbjct: 64  PTKSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTSVPPPEVNPYPPPVD----PDP- 123

Query: 122 PPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPE 175
            P PD PVPP+  PP           PDI PP P +P+P+PD  PP PP+  PP PPGPE
Sbjct: 124 NPAPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDQEPPQPPDIVPPPPPGPE 178

BLAST of Cp4.1LG08g03700 vs. NCBI nr
Match: gi|694418606|ref|XP_009337298.1| (PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 60/130 (46.15%), Postives = 70/130 (53.85%), Query Frame = 1

Query: 53  PEFPQKSP--IPEPSVPLEVPQISISPAIDPIT--PPEL----PPITPGPDFPGLPSPLP 112
           PEF    P    +PS P  VP IS SP +DP T  PPE+    PP+ PGP+         
Sbjct: 57  PEFSPSVPGRYNQPSTPPGVPGISTSPEVDPTTTIPPEVRPYPPPLEPGPN--------- 116

Query: 113 PGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEI 172
           PGPD PVPP+  PP           PDI PP P +P+P P ILPP PPE  PP PP PEI
Sbjct: 117 PGPDFPVPPLNPPP----------LPDIPPPFPDNPLPNPGILPPRPPEVVPPPPPSPEI 167

Query: 173 LTSPSSPDIP 175
           +  P+ P  P
Sbjct: 177 IPPPAPPPPP 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GP1_CHLRE6.0e-0645.67Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii GN=GP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L4M0_CUCSA1.3e-3963.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1[more]
A0A166H4D3_DAUCA7.2e-0642.64Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700201797|gb|KGN56930.1|1.9e-3963.74hypothetical protein Csa_3G144200 [Cucumis sativus][more]
gi|645235327|ref|XP_008224213.1|5.8e-0941.88PREDICTED: vegetative cell wall protein gp1 [Prunus mume][more]
gi|694418606|ref|XP_009337298.1|4.6e-0646.15PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03700.1Cp4.1LG08g03700.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 100..116
score: 3.4E-11coord: 117..134
score: 3.4E-11coord: 77..98
score: 3.4E-11coord: 135..160
score: 3.4E-11coord: 15..27
score: 3.4E-11coord: 53..65
score: 3.4

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g03700CmoCh06G013690Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g03700CSPI03G12660Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g03700MELO3C006490.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g03700CsaV3_3G012790Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g03700CsGy3G012830Cucumber (Gy14) v2cgybcpeB454
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g03700Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g03700Wax gourdcpewgoB1100
Cp4.1LG08g03700Wax gourdcpewgoB1110
Cp4.1LG08g03700Wax gourdcpewgoB1120
Cp4.1LG08g03700Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g03700Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g03700Cucurbita pepo (Zucchini)cpecpeB482
Cp4.1LG08g03700Cucurbita pepo (Zucchini)cpecpeB507
Cp4.1LG08g03700Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g03700Cucumber (Gy14) v1cgycpeB1026
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB408
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB650
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g03700Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g03700Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g03700Cucurbita moschata (Rifu)cmocpeB370
Cp4.1LG08g03700Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g03700Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g03700Wild cucumber (PI 183967)cpecpiB851
Cp4.1LG08g03700Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g03700Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g03700Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g03700Bottle gourd (USVL1VR-Ls)cpelsiB704
Cp4.1LG08g03700Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g03700Bottle gourd (USVL1VR-Ls)cpelsiB716
Cp4.1LG08g03700Watermelon (Charleston Gray)cpewcgB762
Cp4.1LG08g03700Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g03700Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g03700Watermelon (97103) v1cpewmB823
Cp4.1LG08g03700Watermelon (97103) v1cpewmB841
Cp4.1LG08g03700Watermelon (97103) v1cpewmB845
Cp4.1LG08g03700Watermelon (97103) v1cpewmB853
Cp4.1LG08g03700Melon (DHL92) v3.5.1cpemeB805
Cp4.1LG08g03700Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g03700Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g03700Melon (DHL92) v3.6.1cpemedB945
Cp4.1LG08g03700Silver-seed gourdcarcpeB0329
Cp4.1LG08g03700Silver-seed gourdcarcpeB0336
Cp4.1LG08g03700Silver-seed gourdcarcpeB0456
Cp4.1LG08g03700Silver-seed gourdcarcpeB1101
Cp4.1LG08g03700Silver-seed gourdcarcpeB1333