CmoCh06G013690 (gene) Cucurbita moschata (Rifu)

NameCmoCh06G013690
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr06 : 10102428 .. 10102982 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA

mRNA sequence

ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA

Coding sequence (CDS)

ATGTCCTGCACCTCTCCCTTCTCTTTCACTCTCATAAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCCTCTTCCAATCTGGTGATCCCTTCGTTCCCTTCCCATGGCGAATTCCTCCCCTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAATTCCTCAAATTTCGACTTCTCCAGAGATTGACCCGATCACTCCGCCAGAGCTTCCGCCGTTAACTCCCGGGCCGGATTTTCCTGGATTGCCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTGCCGCCGCCACCACCGGAGTTTCCACCGCCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTATCTATGTTTTGA
BLAST of CmoCh06G013690 vs. TrEMBL
Match: A0A0A0L4M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-41
Identity = 119/183 (65.03%), Postives = 131/183 (71.58%), Query Frame = 1

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60
           MS TS FSFTLIRKTLP YY  SS+   + P   SH +FLPF    A LS  LL GDSPE
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNF-AINPFLFSHSQFLPFNEYPASLSLSLLSGDSPE 64

Query: 61  FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120
           FP+  P+P PS PLEIPQ S  PEIDP TP ELP +TP P+FP    P PPGP+ P PP+
Sbjct: 65  FPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPL 124

Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 177
           PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS 
Sbjct: 125 PSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSA 182

BLAST of CmoCh06G013690 vs. TrEMBL
Match: A0A166H4D3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.9e-07
Identity = 57/129 (44.19%), Postives = 75/129 (58.14%), Query Frame = 1

Query: 46  APLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPP--LTP-GPDFP 105
           A  +R +  G  PEFP+K  I +P  P E+P     P+  P+ P E P   L P GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 106 GLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 165
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 166 RPPGPEILT 172
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

BLAST of CmoCh06G013690 vs. TAIR10
Match: AT5G43770.1 (AT5G43770.1 proline-rich family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 67/155 (43.23%), Postives = 76/155 (49.03%), Query Frame = 1

Query: 18  IYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQ 77
           I +   S S   +PS PS G  L     APL     V + P  P+ SP   P      P+
Sbjct: 63  IKFPGGSPSEKELPSGPSRGPEL-----APLE----VPELPNIPEISPSETP------PE 122

Query: 78  ISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDI 137
           ++T P  DP  PP  PP TPGP+FP  PSP PP PD P PP P  P      P   PP  
Sbjct: 123 VTTVPS-DP--PPLGPPQTPGPEFPVPPSPSPPMPDTPNPPTPKTP------PDVVPPIW 182

Query: 138 EPPRPGSPVPEPDILPP--PPPEFPPPRPPGPEIL 171
           EPPRP      PDI PP  PPP   PP P GP I+
Sbjct: 183 EPPRP------PDIFPPESPPPGIDPPPPLGPTIM 187

BLAST of CmoCh06G013690 vs. NCBI nr
Match: gi|700201797|gb|KGN56930.1| (hypothetical protein Csa_3G144200 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 2.0e-41
Identity = 119/183 (65.03%), Postives = 131/183 (71.58%), Query Frame = 1

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKN-SAPLSRFLLVGDSPE 60
           MS TS FSFTLIRKTLP YY  SS+   + P   SH +FLPF    A LS  LL GDSPE
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNF-AINPFLFSHSQFLPFNEYPASLSLSLLSGDSPE 64

Query: 61  FPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPPLTPGPDFPGLPSPLPPGPDLPVPPV 120
           FP+  P+P PS PLEIPQ S  PEIDP TP ELP +TP P+FP    P PPGP+ P PP+
Sbjct: 65  FPEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPL 124

Query: 121 PSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSP 177
           PSPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS 
Sbjct: 125 PSPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSA 182

BLAST of CmoCh06G013690 vs. NCBI nr
Match: gi|645235327|ref|XP_008224213.1| (PREDICTED: vegetative cell wall protein gp1 [Prunus mume])

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-10
Identity = 79/194 (40.72%), Postives = 105/194 (54.12%), Query Frame = 1

Query: 2   SCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPE-- 61
           S  S FS TLIR+T+P   S++S+++     F S       K   PL+  +L    P+  
Sbjct: 4   SSISSFSSTLIRRTIPFCSSTTSTTSATSSQFLSPKR----KPICPLAYHILARALPDPP 63

Query: 62  --FPQKSP------IP----EPSVPLEIPQISTSPEIDP--ITPPELPPLTPGPDFPGLP 121
             +P KSP      +P    +PS P E+P ISTSP++DP  + PPE+ P  P  D    P
Sbjct: 64  DQYPTKSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTSVPPPEVNPYPPPVD----P 123

Query: 122 SPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP 180
            P  P PD PVPP+  PP           PDI PP P +P+P+PD  PP PP+  PP PP
Sbjct: 124 DP-NPAPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDQEPPQPPDIVPPPPP 178

BLAST of CmoCh06G013690 vs. NCBI nr
Match: gi|694418606|ref|XP_009337298.1| (PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri])

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 71/163 (43.56%), Postives = 85/163 (52.15%), Query Frame = 1

Query: 25  SSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSP--IPEPSVPLEIPQISTSP 84
           SS+L+ P+ P   +  P K  AP          PEF    P    +PS P  +P ISTSP
Sbjct: 36  SSHLLAPALPDPPDQYPTK--AP----------PEFSPSVPGRYNQPSTPPGVPGISTSP 95

Query: 85  EIDPIT--PPEL----PPLTPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPD 144
           E+DP T  PPE+    PPL PGP+         PGPD PVPP+  PP           PD
Sbjct: 96  EVDPTTTIPPEVRPYPPPLEPGPN---------PGPDFPVPPLNPPP----------LPD 155

Query: 145 IEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIP 180
           I PP P +P+P P ILPP PPE  PP PP PEI+  P+ P  P
Sbjct: 156 IPPPFPDNPLPNPGILPPRPPEVVPPPPPSPEIIPPPAPPPPP 167

BLAST of CmoCh06G013690 vs. NCBI nr
Match: gi|1021051926|gb|KZN09704.1| (hypothetical protein DCAR_002360 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 57/129 (44.19%), Postives = 75/129 (58.14%), Query Frame = 1

Query: 46  APLSRFLLVGDSPEFPQKSPIPEPSVPLEIPQISTSPEIDPITPPELPP--LTP-GPDFP 105
           A  +R +  G  PEFP+K  I +P  P E+P     P+  P+ P E P   L P GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 106 GLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 165
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 166 RPPGPEILT 172
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

BLAST of CmoCh06G013690 vs. NCBI nr
Match: gi|698529722|ref|XP_009761679.1| (PREDICTED: proline-rich protein 2-like [Nicotiana sylvestris])

HSP 1 Score: 63.2 bits (152), Expect = 5.6e-07
Identity = 78/205 (38.05%), Postives = 104/205 (50.73%), Query Frame = 1

Query: 1   MSCTSPFSFTLIRKTLPIYYSSSSSSNLVIPSFPSHGEFLPFKNSAPLSRFLLVGDSPEF 60
           MS     S +L++KT+P+ +S+  ++ L++ +F  +G  L   ++   +R          
Sbjct: 1   MSYVLAISQSLLKKTIPLNHSTLFTAPLMVKTFKINGPNLTSVSAQMRAR---------- 60

Query: 61  PQKSPIPEPSVPLEIPQISTSPEIDPITP------PELPPLTPGPDFPGLPSPLPP---- 120
                  +PSVP E+PQ    PE DPI P      P L P +PGP FPGLP+PLPP    
Sbjct: 61  ------QQPSVPPEMPQTPNVPEFDPIPPEKPAEKPPLSPPSPGPGFPGLPNPLPPGHDP 120

Query: 121 -GPDLPVPPVP-SPPGIDVPIPPHKP-------PDIEPPRPGSPVPE--PDILPPPPPEF 180
            GPD+P PP   SPPG  V IPP  P       PD+ PP P   VP   PD++PP  PE 
Sbjct: 121 SGPDMPEPPPEISPPGGPVVIPPAIPEIVPPGGPDVIPPGPPEIVPPGGPDVIPPKLPEP 180

Query: 181 PPPRPPGPEILTSPSSPDIPPVSMF 185
            PP P  P+IL        PP+  F
Sbjct: 181 GPPHPSLPDIL--------PPIITF 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L4M0_CUCSA1.4e-4165.03Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1[more]
A0A166H4D3_DAUCA3.9e-0744.19Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G43770.13.0e-0643.23 proline-rich family protein[more]
Match NameE-valueIdentityDescription
gi|700201797|gb|KGN56930.1|2.0e-4165.03hypothetical protein Csa_3G144200 [Cucumis sativus][more]
gi|645235327|ref|XP_008224213.1|3.2e-1040.72PREDICTED: vegetative cell wall protein gp1 [Prunus mume][more]
gi|694418606|ref|XP_009337298.1|3.0e-0843.56PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri][more]
gi|1021051926|gb|KZN09704.1|5.6e-0744.19hypothetical protein DCAR_002360 [Daucus carota subsp. sativus][more]
gi|698529722|ref|XP_009761679.1|5.6e-0738.05PREDICTED: proline-rich protein 2-like [Nicotiana sylvestris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh06G013690.1CmoCh06G013690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 105..121
score: 7.6E-9coord: 122..139
score: 7.6E-9coord: 58..70
score: 7.6E-9coord: 81..102
score: 7.6E-9coord: 140..165
score: 7.

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh06G013690Melon (DHL92) v3.6.1cmomedB855
CmoCh06G013690Silver-seed gourdcarcmoB0322
CmoCh06G013690Silver-seed gourdcarcmoB0332
CmoCh06G013690Silver-seed gourdcarcmoB0448
CmoCh06G013690Silver-seed gourdcarcmoB1058
CmoCh06G013690Silver-seed gourdcarcmoB1288
CmoCh06G013690Cucumber (Chinese Long) v3cmocucB0952
CmoCh06G013690Watermelon (97103) v2cmowmbB833
CmoCh06G013690Watermelon (97103) v2cmowmbB837
CmoCh06G013690Watermelon (97103) v2cmowmbB844
CmoCh06G013690Wax gourdcmowgoB1005
CmoCh06G013690Wax gourdcmowgoB1019
CmoCh06G013690Cucurbita moschata (Rifu)cmocmoB224
CmoCh06G013690Cucurbita moschata (Rifu)cmocmoB308
CmoCh06G013690Cucurbita moschata (Rifu)cmocmoB484
CmoCh06G013690Cucurbita moschata (Rifu)cmocmoB439
CmoCh06G013690Cucumber (Gy14) v1cgycmoB0718
CmoCh06G013690Cucumber (Gy14) v1cgycmoB1074
CmoCh06G013690Cucurbita maxima (Rimu)cmacmoB271
CmoCh06G013690Cucurbita maxima (Rimu)cmacmoB362
CmoCh06G013690Cucurbita maxima (Rimu)cmacmoB622
CmoCh06G013690Cucurbita maxima (Rimu)cmacmoB829
CmoCh06G013690Cucurbita maxima (Rimu)cmacmoB910
CmoCh06G013690Wild cucumber (PI 183967)cmocpiB812
CmoCh06G013690Cucumber (Chinese Long) v2cmocuB805
CmoCh06G013690Cucumber (Chinese Long) v2cmocuB806
CmoCh06G013690Melon (DHL92) v3.5.1cmomeB753
CmoCh06G013690Melon (DHL92) v3.5.1cmomeB755
CmoCh06G013690Watermelon (Charleston Gray)cmowcgB743
CmoCh06G013690Watermelon (Charleston Gray)cmowcgB746
CmoCh06G013690Watermelon (97103) v1cmowmB802
CmoCh06G013690Watermelon (97103) v1cmowmB793
CmoCh06G013690Cucurbita pepo (Zucchini)cmocpeB765
CmoCh06G013690Cucurbita pepo (Zucchini)cmocpeB777
CmoCh06G013690Cucurbita pepo (Zucchini)cmocpeB787
CmoCh06G013690Cucurbita pepo (Zucchini)cmocpeB791
CmoCh06G013690Bottle gourd (USVL1VR-Ls)cmolsiB733
CmoCh06G013690Bottle gourd (USVL1VR-Ls)cmolsiB757
CmoCh06G013690Bottle gourd (USVL1VR-Ls)cmolsiB762
CmoCh06G013690Cucumber (Gy14) v2cgybcmoB247