Cp4.1LG08g03700.1 (mRNA) Cucurbita pepo (Zucchini)

NameCp4.1LG08g03700.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG08 : 1895315 .. 1895854 (-)
Sequence length540
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

mRNA sequence

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

Coding sequence (CDS)

ATGTCCTGCACCTCACCCTTCTCTTTCACTCTCATGAGGAAAACGCTTCCCATTTATTATTCTTCGTCTTCTCCTTCTTCGTTCCTTTCCCATGGCGAATTCCTCCCGTTTAAAAACTCTGCGCCTCTCTCGCGTTTTCTGCTTGTCGGGGACTCGCCGGAGTTTCCCCAAAAGAGCCCCATTCCGGAGCCTTCTGTCCCCCTCGAAGTTCCTCAAATTTCGATTTCTCCAGCGATTGACCCGATCACTCCGCCAGAGCTTCCGCCAATAACTCCCGGGCCGGATTTTCCTGGATTACCGTCTCCCTTGCCTCCCGGACCCGACTTACCAGTTCCGCCGGTTCCATCCCCTCCAGGCATCGACGTACCCATACCACCCCATAAGCCTCCAGATATAGAGCCGCCAAGGCCTGGGTCGCCGGTGCCAGAACCGGACATATTACCGCCGCCGCCACCGGAGTTTCCGCCACCGAGGCCTCCCGGTCCGGAGATATTGACGTCACCGTCTTCCCCTGATATTCCTCCGGTAGCTATGTTTTGA

Protein sequence

MSCTSPFSFTLMRKTLPIYYSSSSPSSFLSHGEFLPFKNSAPLSRFLLVGDSPEFPQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSPSSPDIPPVAMF
BLAST of Cp4.1LG08g03700.1 vs. Swiss-Prot
Match: GP1_CHLRE (Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii GN=GP1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.0e-06
Identity = 58/127 (45.67%), Postives = 62/127 (48.82%), Query Frame = 1

Query: 52  SPEFPQKSPI--PEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDL 111
           SP  P  SP   P P+ P   P +  SPA     P   PP+ P P  P  PSP PP P  
Sbjct: 175 SPTPPSPSPPVPPSPAPPSPAPPVPPSPA----PPSPAPPVPPSPAPPSPPSPAPPSPPS 234

Query: 112 PVPPVPSPPGIDVPIPPH-KPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEILTSP 171
           P PP PSPP    P+PP   PP   PP P  P P P   PP PP  PPPRPP P     P
Sbjct: 235 PAPPSPSPPAPPSPVPPSPAPPSPAPPSPKPPAPPP---PPSPPPPPPPRPPFPANTPMP 294

Query: 172 SSPDIPP 176
            SP  PP
Sbjct: 295 PSPPSPP 294

BLAST of Cp4.1LG08g03700.1 vs. TrEMBL
Match: A0A0A0L4M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 116/182 (63.74%), Postives = 128/182 (70.33%), Query Frame = 1

Query: 1   MSCTSPFSFTLMRKTLPIYYSSSSPSSF----LSHGEFLPFKN-SAPLSRFLLVGDSPEF 60
           MS TS FSFTL+RKTLP YY  SS  +      SH +FLPF    A LS  LL GDSPEF
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSPEF 64

Query: 61  PQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVP 120
           P+  P+P PS PLE+PQ S  P IDP TP ELP ITP P+FP    P PPGP+ P PP+P
Sbjct: 65  PEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPLP 124

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSPS 172
           SPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS S
Sbjct: 125 SPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSAS 182

BLAST of Cp4.1LG08g03700.1 vs. TrEMBL
Match: A0A166H4D3_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.2e-06
Identity = 55/129 (42.64%), Postives = 73/129 (56.59%), Query Frame = 1

Query: 41  APLSRFLLVGDSPEFPQKSPIPEPSVPLEVPQISISPAIDPITPPELPPIT---PGPDFP 100
           A  +R +  G  PEFP+K  I +P  P E+P     P   P+ P E P  +    GPDFP
Sbjct: 33  ASSARMIQSGSPPEFPKKPEI-KPHTPTELPVTPNYPDFGPVPPEEFPKPSLEPSGPDFP 92

Query: 101 GLPSPLPPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPP 160
             P+P PP PD P PP+PSPPG D+P+ P  PP++ PP       +PD++P  PPE  PP
Sbjct: 93  VPPTPSPPVPDAPKPPMPSPPGPDIPLGP-PPPNVFPPN------DPDVIPMGPPEVEPP 152

Query: 161 RPPGPEILT 167
           +   P+I T
Sbjct: 153 QRTPPDIPT 153

BLAST of Cp4.1LG08g03700.1 vs. NCBI nr
Match: gi|700201797|gb|KGN56930.1| (hypothetical protein Csa_3G144200 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 1.9e-39
Identity = 116/182 (63.74%), Postives = 128/182 (70.33%), Query Frame = 1

Query: 1   MSCTSPFSFTLMRKTLPIYYSSSSPSSF----LSHGEFLPFKN-SAPLSRFLLVGDSPEF 60
           MS TS FSFTL+RKTLP YY  SS  +      SH +FLPF    A LS  LL GDSPEF
Sbjct: 5   MSYTSLFSFTLIRKTLPSYYPCSSNFAINPFLFSHSQFLPFNEYPASLSLSLLSGDSPEF 64

Query: 61  PQKSPIPEPSVPLEVPQISISPAIDPITPPELPPITPGPDFPGLPSPLPPGPDLPVPPVP 120
           P+  P+P PS PLE+PQ S  P IDP TP ELP ITP P+FP    P PPGP+ P PP+P
Sbjct: 65  PEIRPVPPPSFPLEIPQFSPPPEIDPSTPSELPSITPEPEFP----PRPPGPEFPKPPLP 124

Query: 121 SPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPP------GPEILTSPS 172
           SPPGIDVP+PP KPP+IEPP PGSPVPEP+ILPP PPE  PPRPP      GPEILTS S
Sbjct: 125 SPPGIDVPLPPRKPPEIEPPWPGSPVPEPEILPPSPPEEVPPRPPSPPRPFGPEILTSAS 182

BLAST of Cp4.1LG08g03700.1 vs. NCBI nr
Match: gi|645235327|ref|XP_008224213.1| (PREDICTED: vegetative cell wall protein gp1 [Prunus mume])

HSP 1 Score: 69.7 bits (169), Expect = 5.8e-09
Identity = 80/191 (41.88%), Postives = 104/191 (54.45%), Query Frame = 1

Query: 2   SCTSPFSFTLMRKTLPIYYSSSSPSSFLSHGEFLPFKNS--APLSRFLLVGDSPE----F 61
           S  S FS TL+R+T+P   S++S +S  S  +FL  K     PL+  +L    P+    +
Sbjct: 4   SSISSFSSTLIRRTIPFCSSTTSTTSATS-SQFLSPKRKPICPLAYHILARALPDPPDQY 63

Query: 62  PQKSP------IP----EPSVPLEVPQISISPAIDP--ITPPELPPITPGPDFPGLPSPL 121
           P KSP      +P    +PS P EVP IS SP +DP  + PPE+ P  P  D    P P 
Sbjct: 64  PTKSPPEFSPPVPGRYDQPSAPPEVPGISTSPDVDPTSVPPPEVNPYPPPVD----PDP- 123

Query: 122 PPGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPE 175
            P PD PVPP+  PP           PDI PP P +P+P+PD  PP PP+  PP PPGPE
Sbjct: 124 NPAPDFPVPPLKPPP----------VPDIPPPFPDNPLPKPDQEPPQPPDIVPPPPPGPE 178

BLAST of Cp4.1LG08g03700.1 vs. NCBI nr
Match: gi|694418606|ref|XP_009337298.1| (PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri])

HSP 1 Score: 60.1 bits (144), Expect = 4.6e-06
Identity = 60/130 (46.15%), Postives = 70/130 (53.85%), Query Frame = 1

Query: 53  PEFPQKSP--IPEPSVPLEVPQISISPAIDPIT--PPEL----PPITPGPDFPGLPSPLP 112
           PEF    P    +PS P  VP IS SP +DP T  PPE+    PP+ PGP+         
Sbjct: 57  PEFSPSVPGRYNQPSTPPGVPGISTSPEVDPTTTIPPEVRPYPPPLEPGPN--------- 116

Query: 113 PGPDLPVPPVPSPPGIDVPIPPHKPPDIEPPRPGSPVPEPDILPPPPPEFPPPRPPGPEI 172
           PGPD PVPP+  PP           PDI PP P +P+P P ILPP PPE  PP PP PEI
Sbjct: 117 PGPDFPVPPLNPPP----------LPDIPPPFPDNPLPNPGILPPRPPEVVPPPPPSPEI 167

Query: 173 LTSPSSPDIP 175
           +  P+ P  P
Sbjct: 177 IPPPAPPPPP 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
GP1_CHLRE6.0e-0645.67Vegetative cell wall protein gp1 OS=Chlamydomonas reinhardtii GN=GP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L4M0_CUCSA1.3e-3963.74Uncharacterized protein OS=Cucumis sativus GN=Csa_3G144200 PE=4 SV=1[more]
A0A166H4D3_DAUCA7.2e-0642.64Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700201797|gb|KGN56930.1|1.9e-3963.74hypothetical protein Csa_3G144200 [Cucumis sativus][more]
gi|645235327|ref|XP_008224213.1|5.8e-0941.88PREDICTED: vegetative cell wall protein gp1 [Prunus mume][more]
gi|694418606|ref|XP_009337298.1|4.6e-0646.15PREDICTED: vegetative cell wall protein gp1-like [Pyrus x bretschneideri][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG08g03700Cp4.1LG08g03700gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG08g03700.1:cds:001Cp4.1LG08g03700.1:cds:001CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG08g03700.1Cp4.1LG08g03700.1-proteinpolypeptide


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 100..116
score: 3.4E-11coord: 117..134
score: 3.4E-11coord: 77..98
score: 3.4E-11coord: 135..160
score: 3.4E-11coord: 15..27
score: 3.4E-11coord: 53..65
score: 3.4