Cp4.1LG08g03690 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG08g03690
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description40S ribosomal protein S15
LocationCp4.1LG08 : 1973799 .. 1975478 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGCAGTCCAGGGCTTTACAGTTTATATATGATCTTAATCGGCAAATTTACTCCACTGAAAACCCTAGCAGCCACAATCCTCAGTTGCACTCAGCCTAGGGCTTCTGATTTCTGAACTCCAACCATGGTAAGGCTCGAAGAATTTTTCGCATTCTGGTTTGACGTTTGTTTACTTCATCTAACCTAGATTTCGTGTTCGTAGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTAGTTCAAATGATAAATGTAATTGGAATGATTTATTTGCTGATTTTTACTCTTCCTCTCCGTTTTCTGTTTTAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTTCGCAAAGCGGTAATTGCTCCCCTTCCTATTTATGTTCCATTTTGTAACTGGAAAAGTTTATTTCATTTGCTTAAATCTGCTACCTGTACGTGCGTGTCTAATTCATTGGTAGTATGCTAGATAGAAAAATACAAGTCCACCTTAATGTACCGTGCTATTATCAAATCCGCGGGTTGTATGCTTTTCTTGGTTGTTATAAGGTGGTTTTGGGAAAGAAATTCGGTGGTTTTCCTGAAACTGCTTTTAACTTGAGGTAAACGAGATCACTTAGATGGATATCGTTCGGAGTACTACTAATTCCCCGACTTTTGTGAAAGTGTGGTGCTTTGTTTGATTTGGTTGCCTCCCTAAGTATTGTTCTGCCACAGGGTTCGCTTGATTCAATTTGGAATCTGTATTGAAACCGAAAGACACCCACCTACATAATTCTTGATGCTCCAAGAATCTGAGCGTAGGCAGAACCTCTCCCAATTATGACTAATTTGCATTTTCCCCATTGGCCTTAAGAGTCTTGTGTTCAGATAAATTTACCTCTCATCTGTCTTCTATGATCGAATGTTACTGCTTACTAGTGACGTTTCATGGGTGAATGGTGGCTTGGAGAATGTGATATCAATCTCACATGTTCTTTCCCCTTTTATGTACAGAAACGTGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATTGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGAAGAGAGATTACCATTTGTTGGTCTGGGAGCATACTCTCCATCTCGTCAAGTTTTATGGATATTTATTTTTTGCTGTATTAGTCTATTTTTGGCTACTTTTTGACCGGGATTTAATTTCTATAAACAGTGAAAGATGATTTTGATGGTTCAGAGACATGTTCTAGTTGTTTAACTAAGAATGCCTAAGCTGTGCATGTGATGCCTGTGTGTGTGTTCTTTAAGGTTCTTTCGATTTGTTTTATTTGACTGGAGAATGTTTCTTATATTGGGATCAGATCAAATAGCTATTATTCAAATGCCTATC

mRNA sequence

AATTGCAGTCCAGGGCTTTACAGTTTATATATGATCTTAATCGGCAAATTTACTCCACTGAAAACCCTAGCAGCCACAATCCTCAGTTGCACTCAGCCTAGGGCTTCTGATTTCTGAACTCCAACCATGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTTCGCAAAGCGAAACGTGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATTGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGAAGAGAGATTACCATTTGTTGGTCTGGGAGCATACTCTCCATCTCGTCAAGTTTTATGGATATTTATTTTTTGCTGTATTAGTCTATTTTTGGCTACTTTTTGACCGGGATTTAATTTCTATAAACAGTGAAAGATGATTTTGATGGTTCAGAGACATGTTCTAGTTGTTTAACTAAGAATGCCTAAGCTGTGCATGTGATGCCTGTGTGTGTGTTCTTTAAGGTTCTTTCGATTTGTTTTATTTGACTGGAGAATGTTTCTTATATTGGGATCAGATCAAATAGCTATTATTCAAATGCCTATC

Coding sequence (CDS)

ATGGCGGACGATAATCCCGATGTCGCGGCGGCCGGAGGAGTGCCGAAGAAGAGGACGTTCAAGAAGTTCAGTTTCCGTGGAGTCGATTTGGATGCTCTCCTCGACATGTCCACCGACGAGCTCGTCAAGCTCTTCACTGCTAGGGCTCGCAGAAGGTTCCGGAGGGGTCTGACTAGAAAGCCAATGGCTTTGATCAAGAAGCTTCGCAAAGCGAAACGTGAGGCACCACCGGGTGAGAAGCCAGAACCTGTTAGAACTCACCTTCGTAATATGATCATAGTACCTGAAATGATTGGAAGCATCATTGGAGTTTACAATGGGAAGACCTTCAACCAGGTTGAAATCAAGCCTGAGATGATCGGCCATTACCTAGCTGAGTTTTCCATATCATACAAGCCTGTTAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCATCCAGGTTCATTCCTCTGAAGTGA

Protein sequence

MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
BLAST of Cp4.1LG08g03690 vs. Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-74
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 2.6e-74
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.2e-72
Identity = 136/153 (88.89%), Postives = 141/153 (92.16%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD +  V   G  PKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-70
Identity = 130/144 (90.28%), Postives = 139/144 (96.53%), Query Frame = 1

Query: 10  AAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLR 69
           AAG  PKKRTF+K+S+RGVDLDALLDMSTD+LV+LF ARARRRF+RGL RKPMALIKKLR
Sbjct: 11  AAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLR 70

Query: 70  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 129
           KAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSI
Sbjct: 71  KAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSI 130

Query: 130 SYKPVKHGRPGIGATHSSRFIPLK 154
           SYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 131 SYKPVKHGRPGIGATHSSRFIPLK 154

BLAST of Cp4.1LG08g03690 vs. Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 3.9e-70
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD + DV      PKKRTFKKFS+RGVDLDALLDM+++ELVKLF ARARRRF+RGL R+
Sbjct: 1   MADADVDVGPVQ--PKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQ 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

BLAST of Cp4.1LG08g03690 vs. TrEMBL
Match: I3SMI9_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.3e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLF+ARARRRF+RGLTRK
Sbjct: 1   MADVEVDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. TrEMBL
Match: A0A0A0LLK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193310 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.1e-75
Identity = 146/153 (95.42%), Postives = 146/153 (95.42%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DV  AG  PKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADVEADVPVAGQQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. TrEMBL
Match: A0A0L9T8D9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan325s002000 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DVAAA G PKKRTFKKFSFRGVDLDALLDMSTDELVKLF+ARARRRF+RGLTRK
Sbjct: 1   MADVEVDVAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. TrEMBL
Match: A0A0S3QWK2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G016500 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-74
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DVAAA G PKKRTFKKFSFRGVDLDALLDMSTDELVKLF+ARARRRF+RGLTRK
Sbjct: 1   MADVEVDVAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. TrEMBL
Match: I3T4G8_MEDTR (40S ribosomal protein S15-4 OS=Medicago truncatula GN=MTR_1g070450 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.4e-74
Identity = 145/153 (94.77%), Postives = 149/153 (97.39%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAA G VPKKRTFKKFSFRGVDLDALLDMSTDELVKLF++RARRRF+RGLTRK
Sbjct: 1   MADVEPEVAAQG-VPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSSRARRRFQRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. TAIR10
Match: AT1G04270.1 (AT1G04270.1 cytosolic ribosomal protein S15)

HSP 1 Score: 279.3 bits (713), Expect = 1.5e-75
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. TAIR10
Match: AT5G09510.1 (AT5G09510.1 Ribosomal protein S19 family protein)

HSP 1 Score: 279.3 bits (713), Expect = 1.5e-75
Identity = 140/153 (91.50%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAAG VPKKRTFKKF+F+GVDLDALLDMSTD+LVKLF++R RRRF RGLTRK
Sbjct: 1   MADVEPEVAAAG-VPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. TAIR10
Match: AT5G09500.1 (AT5G09500.1 Ribosomal protein S19 family protein)

HSP 1 Score: 261.5 bits (667), Expect = 3.2e-70
Identity = 135/153 (88.24%), Postives = 142/153 (92.81%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD  P+VAAAG + KKRTFKKFSFRGVDLDALLDMSTD+LVKLF +R RRRF RGLTRK
Sbjct: 1   MAD--PEVAAAG-IVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

BLAST of Cp4.1LG08g03690 vs. TAIR10
Match: AT5G43640.1 (AT5G43640.1 Ribosomal protein S19 family protein)

HSP 1 Score: 254.6 bits (649), Expect = 3.9e-68
Identity = 129/148 (87.16%), Postives = 137/148 (92.57%), Query Frame = 1

Query: 6   PDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRKPMALI 65
           P+V AAG + KKRTFKKFSFRGVDLDALLDMS ++LVK F++R RRRF RGLTRKPMALI
Sbjct: 3   PEVVAAG-IVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALI 62

Query: 66  KKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 125
           KKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA
Sbjct: 63  KKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLA 122

Query: 126 EFSISYKPVKHGRPGIGATHSSRFIPLK 154
           EFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 123 EFSISYKPVKHGRPGVGATNSSRFIPLK 149

BLAST of Cp4.1LG08g03690 vs. TAIR10
Match: AT5G09490.1 (AT5G09490.1 Ribosomal protein S19 family protein)

HSP 1 Score: 251.1 bits (640), Expect = 4.3e-67
Identity = 125/153 (81.70%), Postives = 139/153 (90.85%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MA+  PDV+AA  + KKRTFKKFSF+GVDLDALLDM TD+LV+LF +R RRR  RGLTRK
Sbjct: 1   MAEVEPDVSAAA-LAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMI
Sbjct: 61  PMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 GHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

BLAST of Cp4.1LG08g03690 vs. NCBI nr
Match: gi|659076252|ref|XP_008438580.1| (PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo])

HSP 1 Score: 305.1 bits (780), Expect = 7.1e-80
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADDNPDVAAA GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADDNPDVAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. NCBI nr
Match: gi|449432622|ref|XP_004134098.1| (PREDICTED: 40S ribosomal protein S15-4 [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 1.7e-78
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 1

Query: 1   MADDNPDVAAAG-GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60
           MADDNPDVAAA  GVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR
Sbjct: 1   MADDNPDVAAAAAGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTR 60

Query: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120
           KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 61  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 120

Query: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

BLAST of Cp4.1LG08g03690 vs. NCBI nr
Match: gi|388506830|gb|AFK41481.1| (unknown [Lotus japonicus])

HSP 1 Score: 292.0 bits (746), Expect = 6.2e-76
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLF+ARARRRF+RGLTRK
Sbjct: 1   MADVEVDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. NCBI nr
Match: gi|1009117659|ref|XP_015875436.1| (PREDICTED: 40S ribosomal protein S15-4-like [Ziziphus jujuba])

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-75
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DVA A G+PKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRF+RGL RK
Sbjct: 1   MADVETDVAVAAGLPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of Cp4.1LG08g03690 vs. NCBI nr
Match: gi|449465374|ref|XP_004150403.1| (PREDICTED: 40S ribosomal protein S15-4-like [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-75
Identity = 146/153 (95.42%), Postives = 146/153 (95.42%), Query Frame = 1

Query: 1   MADDNPDVAAAGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60
           MAD   DV  AG  PKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADVEADVPVAGQQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS151_ARATH2.6e-7491.5040S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1[more]
RS154_ARATH2.6e-7491.5040S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1[more]
RS15_ELAOL3.2e-7288.8940S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1[more]
RS15_ORYSJ3.0e-7090.2840S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2[more]
RS15_PICMA3.9e-7088.2440S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
I3SMI9_LOTJA4.3e-7696.08Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A0A0LLK6_CUCSA2.1e-7595.42Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193310 PE=3 SV=1[more]
A0A0L9T8D9_PHAAN1.1e-7494.77Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan325s002000 PE=3 SV=1[more]
A0A0S3QWK2_PHAAN1.1e-7494.77Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G016500 PE=... [more]
I3T4G8_MEDTR1.4e-7494.7740S ribosomal protein S15-4 OS=Medicago truncatula GN=MTR_1g070450 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G04270.11.5e-7591.50 cytosolic ribosomal protein S15[more]
AT5G09510.11.5e-7591.50 Ribosomal protein S19 family protein[more]
AT5G09500.13.2e-7088.24 Ribosomal protein S19 family protein[more]
AT5G43640.13.9e-6887.16 Ribosomal protein S19 family protein[more]
AT5G09490.14.3e-6781.70 Ribosomal protein S19 family protein[more]
Match NameE-valueIdentityDescription
gi|659076252|ref|XP_008438580.1|7.1e-8099.35PREDICTED: 40S ribosomal protein S15-4 [Cucumis melo][more]
gi|449432622|ref|XP_004134098.1|1.7e-7898.70PREDICTED: 40S ribosomal protein S15-4 [Cucumis sativus][more]
gi|388506830|gb|AFK41481.1|6.2e-7696.08unknown [Lotus japonicus][more]
gi|1009117659|ref|XP_015875436.1|3.1e-7594.77PREDICTED: 40S ribosomal protein S15-4-like [Ziziphus jujuba][more]
gi|449465374|ref|XP_004150403.1|3.1e-7595.42PREDICTED: 40S ribosomal protein S15-4-like [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR023575Ribosomal_S19_SF
IPR020934Ribosomal_S19_CS
IPR005713Ribosomal_S19A/S15e
IPR002222Ribosomal_S19
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000028 ribosomal small subunit assembly
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g03690.1Cp4.1LG08g03690.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 106..118
score: 7.3E-13coord: 118..133
score: 7.3E-13coord: 86..105
score: 7.3
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 49..142
score: 21
IPR002222Ribosomal protein S19/S15PIRPIRSF002144RPS19p_RPS19a_RPS15e_RPS19ocoord: 12..153
score: 4.2
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 2..153
score: 9.3E
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 55..136
score: 3.0
IPR005713Ribosomal protein S19A/S15eTIGRFAMsTIGR01025TIGR01025coord: 20..153
score: 4.9
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 106..130
scor
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 54..146
score: 1.4
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 56..137
score: 8.76
NoneNo IPR availablePANTHERPTHR11880:SF1040S RIBOSOMAL PROTEIN S15-6coord: 2..153
score: 9.3E

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g03690Cucsa.254920Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g03690Cucsa.383840Cucumber (Gy14) v1cgycpeB1012
Cp4.1LG08g03690CmaCh17G001780Cucurbita maxima (Rimu)cmacpeB411
Cp4.1LG08g03690CmaCh08G011050Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g03690CmoCh17G001750Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g03690CmoCh08G010770Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g03690Cla021565Watermelon (97103) v1cpewmB845
Cp4.1LG08g03690Cla007560Watermelon (97103) v1cpewmB853
Cp4.1LG08g03690Csa2G193310Cucumber (Chinese Long) v2cpecuB849
Cp4.1LG08g03690Csa3G143520Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g03690MELO3C026780Melon (DHL92) v3.5.1cpemeB804
Cp4.1LG08g03690MELO3C006471Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g03690ClCG05G004620Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g03690ClCG06G006730Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g03690CSPI03G12480Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g03690CSPI02G10640Wild cucumber (PI 183967)cpecpiB851
Cp4.1LG08g03690Lsi05G016710Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g03690MELO3C006471.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g03690MELO3C026780.2Melon (DHL92) v3.6.1cpemedB944
Cp4.1LG08g03690CsaV3_2G013050Cucumber (Chinese Long) v3cpecucB1045
Cp4.1LG08g03690CsaV3_3G012600Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g03690BhiUN393G13Wax gourdcpewgoB1121
Cp4.1LG08g03690CsGy3G012610Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g03690CsGy2G010640Cucumber (Gy14) v2cgybcpeB278
Cp4.1LG08g03690Carg16587Silver-seed gourdcarcpeB0336
Cp4.1LG08g03690Carg06195Silver-seed gourdcarcpeB1333
Cp4.1LG08g03690Carg10944Silver-seed gourdcarcpeB1507
Cp4.1LG08g03690Carg10071Silver-seed gourdcarcpeB0329
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g03690Cp4.1LG12g01460Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g03690Cp4.1LG17g01900Cucurbita pepo (Zucchini)cpecpeB342
Cp4.1LG08g03690Cp4.1LG03g10240Cucurbita pepo (Zucchini)cpecpeB482