CmaCh17G001780 (gene) Cucurbita maxima (Rimu)

NameCmaCh17G001780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S19
LocationCma_Chr17 : 928774 .. 930841 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATTGTGAAGCTTCATCGCGCCGATTAGCTCTACCTTCTCATCCCGGAGTTCCGACAACGTAAACCATGGTATGTTCTCAACTCATTCTTCTCTTCGATTTATCGTTCATCTCTTTCAGTTTCTTTGATGGCGTTGCCTCGGTCTCCTTTAGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCTACCGATGAGCTGGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTGCTACAACTGAATGTGTCATGAATTGATTTTTGTGTTCTTTTTCGTTCTTAACGTACACGTTTTTCTAACATTCTTATGGTTTTTGGATAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGGTTAGTATCTTTTAGATCCATTTCTGCCTATTCAATATTGCAATTATTTTACAACTTTGTATTGTTTTCTGATTCTCACTGGCGATGCTGTTTTCTGGAATGCAAATGGTGATGGACTCTTTCCTGTGTAGTATCTTAATCTTGCCATGGTTTAGGTTAAATTTTTCTTCAGTGTTCTTGATGAGTAGATAGGTGGAAAGAAAATGATTTAATTAGGCCATTATACCTTAAATATATAGTTTTATCAGATGAGAATTCCAACAATATGTTTAGACTATGAATCAATCCTTTTGAGGGCTGTTATTAACTTATATTCTCAAGCTTCCCTGTAATTTGCTTTAACCTTCAAATGAACAACAATGAACTGAAACTTTGGGAAAGTTTTCATTTTCCATAAGCTTTTGCCCCAAATCATCTAGTGGGAAATTTTGCCCTCATGATCAACAGTTTTGAATCAGTTTCATCACAAAGGAATGCACTCCCACTTTTATTTCTGAAAACACACGCTGTTGTCCTGATAGTGTGGTATTCTTCATTATTAACACGAGTCTGACTTCAAGCCGACATGTTTTACCAACTTACGTTGCTGCTTGCAATTCTCTCCCTTGTTTTTGCTATTGGATTTCTCGTATCCTTACATGGGAACTTACCCATTGTTGGATATGTAAGTTGATGTACCATGAATCTCCGAATCTCGTCCTATACGGTTGTGTTAGTTCTTGCAGTTGTTCTGACTTTTCCATTGGATTTCTCATATCTTAACATGAAAACTCAAGATCATCCTTCAGTGGTAGATTTAGATTTGGAAGTGAATATATTTTGAATCTCCAAAATTTATCATTTCATTTTGAACTTTTATATTTTCCATTTTATATCTTCAGTGGTAGATTTATATGTGAACGTATCCTTCTTCTCTGGATACCTCTTCCTTTTCCAAAAAACAGAAGAACAGTTGAGCTATTTTCTTTTGATGTCTCATCTCATCTATTTATTTATTTTTAAACTGAAATAGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGAGTTTACAACGGCAAAACATTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGATTCATTCCTCTCAAGTGAAAATCAGTGTCGAGTTCTTGCTTGCTTAGTTTTGTTATATTATTACATGAAACTTGGATGTTTATCAGATTTTGTTCCTAGTTTTTGCCCATTTTCTATGCTTTATATAAGCTGATTAGTACTATGGAGGCTTGAGCTATTTAGTTTTTTGAAGCTGTTGTTACTGTTAAAATTTTTATTCTACTTGTCTCATCTAAATGTAGACTTGGTTGTACCTTTCAGTTTTACGTGGTTGTTTGCTCAAATATGTCTCGTTATATTTCATATCTATGGTCTAGATATATGTCCAGATTCGAATCTGTTAGTTTGAACGTACCTTCTCTGTTAGATTGTGATGTTTTATTTATCGAAA

mRNA sequence

CAGATTGTGAAGCTTCATCGCGCCGATTAGCTCTACCTTCTCATCCCGGAGTTCCGACAACGTAAACCATGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCTACCGATGAGCTGGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGAGTTTACAACGGCAAAACATTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGATTCATTCCTCTCAAGTGAAAATCAGTGTCGAGTTCTTGCTTGCTTAGTTTTGTTATATTATTACATGAAACTTGGATGTTTATCAGATTTTGTTCCTAGTTTTTGCCCATTTTCTATGCTTTATATAAGCTGATTAGTACTATGGAGGCTTGAGCTATTTAGTTTTTTGAAGCTGTTGTTACTGTTAAAATTTTTATTCTACTTGTCTCATCTAAATGTAGACTTGGTTGTACCTTTCAGTTTTACGTGGTTGTTTGCTCAAATATGTCTCGTTATATTTCATATCTATGGTCTAGATATATGTCCAGATTCGAATCTGTTAGTTTGAACGTACCTTCTCTGTTAGATTGTGATGTTTTATTTATCGAAA

Coding sequence (CDS)

ATGGCGGATGTGGAAGCCGATGTTGCAGTGGCGGGGCAGCCAAAGAAGAGGACGTTCAAGAAGTTCAGCTTCCGAGGCGTCGATTTGGATTCTTTGCTGGACATGTCTACCGATGAGCTGGTCAAGCTCTTCACTGCCCGTGCACGCAGAAGGTTTCGTCGGGGTTTGACAAGGAAGCCAATGGCTCTTATCAAGAAGCTTCGTAAAGCGAAAAGGGAAGCACCTCCTGGTGAGAAGCCAGAGCCCGTCCGAACACACCTTCGGAACATGATCATTGTGCCAGAGATGATTGGAAGCATCATTGGAGTTTACAACGGCAAAACATTCAACCAAGTTGAAATCAAGCCAGAGATGATTGGCCATTACCTAGCAGAGTTCTCCATTTCATACAAGCCCGTCAAGCACGGTAGGCCCGGTATTGGTGCCACCCACTCTTCAAGATTCATTCCTCTCAAGTGA

Protein sequence

MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
BLAST of CmaCh17G001780 vs. Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.2e-74
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.3e-73
Identity = 139/153 (90.85%), Postives = 143/153 (93.46%), Query Frame = 1

Query: 1   MADVEADVAVAG-QPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADV   V V G QPKKRTF+KFS+RGVDLD LLDM TDELVKLF ARARRRF+RGL RK
Sbjct: 1   MADVSDAVDVGGAQPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of CmaCh17G001780 vs. Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-71
Identity = 131/150 (87.33%), Postives = 143/150 (95.33%), Query Frame = 1

Query: 3   DVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPMA 62
           +VE +VA   QPKKRTF+K+S+RGVDLD+LLDMSTD+LV+LF ARARRRF+RGL RKPMA
Sbjct: 5   EVETEVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMA 64

Query: 63  LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHY 122
           LIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHY
Sbjct: 65  LIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHY 124

Query: 123 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           LAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 125 LAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

BLAST of CmaCh17G001780 vs. Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 3.5e-71
Identity = 135/152 (88.82%), Postives = 143/152 (94.08%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD + DV    QPKKRTFKKFS+RGVDLD+LLDM+++ELVKLF ARARRRF+RGL R+P
Sbjct: 1   MADADVDVGPV-QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

BLAST of CmaCh17G001780 vs. TrEMBL
Match: A0A0A0LLK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193310 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.9e-77
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 1

Query: 1   MADVEADVAVAGQ-PKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADVEADV VAGQ PKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADVEADVPVAGQQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of CmaCh17G001780 vs. TrEMBL
Match: A0A151T3B5_CAJCA (40S ribosomal protein S15 (Fragment) OS=Cajanus cajan GN=KK1_016028 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.3e-76
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 1

Query: 2   ADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPM 61
           ADVE DVA  GQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLF+ARARRRF+RGLTRKPM
Sbjct: 1   ADVEVDVAAGGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPM 60

Query: 62  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 121
           ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH
Sbjct: 61  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 120

Query: 122 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           YLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

BLAST of CmaCh17G001780 vs. TrEMBL
Match: B9S4T9_RICCO (40S ribosomal protein S15, putative OS=Ricinus communis GN=RCOM_0992390 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.6e-76
Identity = 144/152 (94.74%), Postives = 148/152 (97.37%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADV+ DVA  GQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVDGDVAAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TrEMBL
Match: A9P8I7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24120g PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.6e-76
Identity = 145/152 (95.39%), Postives = 148/152 (97.37%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVEADVA AGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLF ARARRRF+RGL RKP
Sbjct: 1   MADVEADVAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFPARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMI 
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIS 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TrEMBL
Match: W9RI49_9ROSA (40S ribosomal protein S15 OS=Morus notabilis GN=L484_024561 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.3e-76
Identity = 145/152 (95.39%), Postives = 149/152 (98.03%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VAV+G PKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVETEVAVSGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TAIR10
Match: AT1G04270.1 (AT1G04270.1 cytosolic ribosomal protein S15)

HSP 1 Score: 280.4 bits (716), Expect = 6.5e-76
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TAIR10
Match: AT5G09510.1 (AT5G09510.1 Ribosomal protein S19 family protein)

HSP 1 Score: 280.4 bits (716), Expect = 6.5e-76
Identity = 138/152 (90.79%), Postives = 146/152 (96.05%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE +VA AG PKKRTFKKF+F+GVDLD+LLDMSTD+LVKLF++R RRRF RGLTRKP
Sbjct: 1   MADVEPEVAAAGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TAIR10
Match: AT5G09500.1 (AT5G09500.1 Ribosomal protein S19 family protein)

HSP 1 Score: 258.8 bits (660), Expect = 2.0e-69
Identity = 133/152 (87.50%), Postives = 139/152 (91.45%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MAD E  VA AG  KKRTFKKFSFRGVDLD+LLDMSTD+LVKLF +R RRRF RGLTRKP
Sbjct: 1   MADPE--VAAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

BLAST of CmaCh17G001780 vs. TAIR10
Match: AT5G09490.1 (AT5G09490.1 Ribosomal protein S19 family protein)

HSP 1 Score: 253.4 bits (646), Expect = 8.6e-68
Identity = 124/152 (81.58%), Postives = 138/152 (90.79%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VE DV+ A   KKRTFKKFSF+GVDLD+LLDM TD+LV+LF +R RRR  RGLTRKP
Sbjct: 1   MAEVEPDVSAAALAKKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIG
Sbjct: 61  MALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 121 HYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. TAIR10
Match: AT5G43640.1 (AT5G43640.1 Ribosomal protein S19 family protein)

HSP 1 Score: 253.4 bits (646), Expect = 8.6e-68
Identity = 127/149 (85.23%), Postives = 136/149 (91.28%), Query Frame = 1

Query: 4   VEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPMAL 63
           +E +V  AG  KKRTFKKFSFRGVDLD+LLDMS ++LVK F++R RRRF RGLTRKPMAL
Sbjct: 1   MEPEVVAAGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMAL 60

Query: 64  IKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL 123
           IKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL
Sbjct: 61  IKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL 120

Query: 124 AEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           AEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 121 AEFSISYKPVKHGRPGVGATNSSRFIPLK 149

BLAST of CmaCh17G001780 vs. NCBI nr
Match: gi|702432250|ref|XP_010069156.1| (PREDICTED: 40S ribosomal protein S15-4-like [Eucalyptus grandis])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-77
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MA+VEADVAVAGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MAEVEADVAVAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. NCBI nr
Match: gi|449465374|ref|XP_004150403.1| (PREDICTED: 40S ribosomal protein S15-4-like [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 5.6e-77
Identity = 150/153 (98.04%), Postives = 151/153 (98.69%), Query Frame = 1

Query: 1   MADVEADVAVAGQ-PKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRK 60
           MADVEADV VAGQ PKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRFRRGLTRK
Sbjct: 1   MADVEADVPVAGQQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFRRGLTRK 60

Query: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120
           PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI
Sbjct: 61  PMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMI 120

Query: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

BLAST of CmaCh17G001780 vs. NCBI nr
Match: gi|951001821|ref|XP_014507185.1| (PREDICTED: 40S ribosomal protein S15-4 [Vigna radiata var. radiata])

HSP 1 Score: 292.7 bits (748), Expect = 3.6e-76
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADVE DVA AGQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLF+ARARRRF+RGLTRKP
Sbjct: 1   MADVEVDVAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

BLAST of CmaCh17G001780 vs. NCBI nr
Match: gi|1012350345|gb|KYP61534.1| (40S ribosomal protein S15, partial [Cajanus cajan])

HSP 1 Score: 292.0 bits (746), Expect = 6.2e-76
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 1

Query: 2   ADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKPM 61
           ADVE DVA  GQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLF+ARARRRF+RGLTRKPM
Sbjct: 1   ADVEVDVAAGGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPM 60

Query: 62  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 121
           ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH
Sbjct: 61  ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGH 120

Query: 122 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           YLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 YLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

BLAST of CmaCh17G001780 vs. NCBI nr
Match: gi|255559955|ref|XP_002520996.1| (PREDICTED: 40S ribosomal protein S15-4 [Ricinus communis])

HSP 1 Score: 291.6 bits (745), Expect = 8.0e-76
Identity = 144/152 (94.74%), Postives = 148/152 (97.37%), Query Frame = 1

Query: 1   MADVEADVAVAGQPKKRTFKKFSFRGVDLDSLLDMSTDELVKLFTARARRRFRRGLTRKP 60
           MADV+ DVA  GQPKKRTFKKFSFRGVDLD+LLDMSTDELVKLFTARARRRF+RGL RKP
Sbjct: 1   MADVDGDVAAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLKRKP 60

Query: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIG 120
           MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIG
Sbjct: 61  MALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIG 120

Query: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153
           HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 121 HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS151_ARATH1.2e-7490.7940S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=2 SV=1[more]
RS154_ARATH1.2e-7490.7940S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1[more]
RS15_ELAOL8.3e-7390.8540S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1[more]
RS15_ORYSJ1.2e-7187.3340S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2[more]
RS15_PICMA3.5e-7188.8240S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LLK6_CUCSA3.9e-7798.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G193310 PE=3 SV=1[more]
A0A151T3B5_CAJCA4.3e-7696.0340S ribosomal protein S15 (Fragment) OS=Cajanus cajan GN=KK1_016028 PE=3 SV=1[more]
B9S4T9_RICCO5.6e-7694.7440S ribosomal protein S15, putative OS=Ricinus communis GN=RCOM_0992390 PE=3 SV=... [more]
A9P8I7_POPTR5.6e-7695.39Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24120g PE=2 SV=1[more]
W9RI49_9ROSA7.3e-7695.3940S ribosomal protein S15 OS=Morus notabilis GN=L484_024561 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT1G04270.16.5e-7690.79 cytosolic ribosomal protein S15[more]
AT5G09510.16.5e-7690.79 Ribosomal protein S19 family protein[more]
AT5G09500.12.0e-6987.50 Ribosomal protein S19 family protein[more]
AT5G09490.18.6e-6881.58 Ribosomal protein S19 family protein[more]
AT5G43640.18.6e-6885.23 Ribosomal protein S19 family protein[more]
Match NameE-valueIdentityDescription
gi|702432250|ref|XP_010069156.1|2.5e-7797.37PREDICTED: 40S ribosomal protein S15-4-like [Eucalyptus grandis][more]
gi|449465374|ref|XP_004150403.1|5.6e-7798.04PREDICTED: 40S ribosomal protein S15-4-like [Cucumis sativus][more]
gi|951001821|ref|XP_014507185.1|3.6e-7696.05PREDICTED: 40S ribosomal protein S15-4 [Vigna radiata var. radiata][more]
gi|1012350345|gb|KYP61534.1|6.2e-7696.0340S ribosomal protein S15, partial [Cajanus cajan][more]
gi|255559955|ref|XP_002520996.1|8.0e-7694.74PREDICTED: 40S ribosomal protein S15-4 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002222Ribosomal_S19
IPR005713Ribosomal_S19A/S15e
IPR020934Ribosomal_S19_CS
IPR023575Ribosomal_S19_SF
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0000028 ribosomal small subunit assembly
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0022627 cytosolic small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G001780.1CmaCh17G001780.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 105..117
score: 7.2E-13coord: 117..132
score: 7.2E-13coord: 85..104
score: 7.2
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 48..141
score: 21
IPR002222Ribosomal protein S19/S15PIRPIRSF002144RPS19p_RPS19a_RPS15e_RPS19ocoord: 7..152
score: 2.6
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 2..152
score: 8.2E
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 54..135
score: 2.9
IPR005713Ribosomal protein S19A/S15eTIGRFAMsTIGR01025TIGR01025coord: 19..152
score: 5.7
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 105..129
scor
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 53..145
score: 1.4
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 55..136
score: 8.63
NoneNo IPR availablePANTHERPTHR11880:SF1040S RIBOSOMAL PROTEIN S15-6coord: 2..152
score: 8.2E

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G001780Cucsa.383840Cucumber (Gy14) v1cgycmaB1055
CmaCh17G001780Cucsa.254920Cucumber (Gy14) v1cgycmaB0714
CmaCh17G001780Cla021565Watermelon (97103) v1cmawmB344
CmaCh17G001780Cla007560Watermelon (97103) v1cmawmB358
CmaCh17G001780Csa3G143520Cucumber (Chinese Long) v2cmacuB355
CmaCh17G001780Csa2G193310Cucumber (Chinese Long) v2cmacuB350
CmaCh17G001780MELO3C026780Melon (DHL92) v3.5.1cmameB338
CmaCh17G001780MELO3C006471Melon (DHL92) v3.5.1cmameB342
CmaCh17G001780ClCG05G004620Watermelon (Charleston Gray)cmawcgB319
CmaCh17G001780ClCG06G006730Watermelon (Charleston Gray)cmawcgB328
CmaCh17G001780CSPI03G12480Wild cucumber (PI 183967)cmacpiB359
CmaCh17G001780CSPI02G10640Wild cucumber (PI 183967)cmacpiB354
CmaCh17G001780CmoCh17G001750Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G001780CmoCh08G010770Cucurbita moschata (Rifu)cmacmoB365
CmaCh17G001780Lsi05G016710Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G001780Cp4.1LG03g10240Cucurbita pepo (Zucchini)cmacpeB402
CmaCh17G001780Cp4.1LG12g01460Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G001780Cp4.1LG17g01900Cucurbita pepo (Zucchini)cmacpeB388
CmaCh17G001780Cp4.1LG08g03690Cucurbita pepo (Zucchini)cmacpeB411
CmaCh17G001780MELO3C006471.2Melon (DHL92) v3.6.1cmamedB398
CmaCh17G001780MELO3C026780.2Melon (DHL92) v3.6.1cmamedB394
CmaCh17G001780CsaV3_2G013050Cucumber (Chinese Long) v3cmacucB0418
CmaCh17G001780CsaV3_3G012600Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G001780Cla97C06G116310Watermelon (97103) v2cmawmbB377
CmaCh17G001780Cla97C05G085650Watermelon (97103) v2cmawmbB366
CmaCh17G001780CsGy3G012610Cucumber (Gy14) v2cgybcmaB345
CmaCh17G001780CsGy2G010640Cucumber (Gy14) v2cgybcmaB193
CmaCh17G001780Carg06195Silver-seed gourdcarcmaB1321
CmaCh17G001780Carg10944Silver-seed gourdcarcmaB1489
CmaCh17G001780Carg10071Silver-seed gourdcarcmaB0314
CmaCh17G001780Carg16587Silver-seed gourdcarcmaB0326
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh17G001780CmaCh08G011050Cucurbita maxima (Rimu)cmacmaB373
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G001780Bottle gourd (USVL1VR-Ls)cmalsiB331
CmaCh17G001780Watermelon (97103) v2cmawmbB392
CmaCh17G001780Wax gourdcmawgoB0455
CmaCh17G001780Wax gourdcmawgoB0497
CmaCh17G001780Cucurbita maxima (Rimu)cmacmaB249
CmaCh17G001780Cucurbita maxima (Rimu)cmacmaB369
CmaCh17G001780Cucurbita moschata (Rifu)cmacmoB350
CmaCh17G001780Cucurbita moschata (Rifu)cmacmoB362
CmaCh17G001780Watermelon (97103) v1cmawmB333