Cp4.1LG08g01620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g01620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPollen-specific SF3
LocationCp4.1LG08 : 3373261 .. 3375119 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGATATCCCTTCTCTTTCTATCCCATTCCACTTAGCTTCTTGCTTCTTTTCCTCTAATCTTGTCTGAGATCCCATCCTCAGACAACTTGGTAAACATTCCATTTGTTTGTCTTTTGTTGTTGTTGTTCTTCTTCTTCCCGCTCTTCTTCGTGTTCTTGTTTTTTCCCTTCTGTTCAAGTCAAGTCGTTCGATTCGAGATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCATAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGTACCCTTTCGGTATGTCGAGAGTTAACGAGTTTTCTTTCTTTTGTTGTTATCATTATGTTTGTTCTAATACTGAATCGTTGAGCTGTTTCACGATAGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAACAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTCCAAACTTGTAATGTTTTTTCTTCTCTGTTTCTTATTGTTCGTCCCTCGTTTTTACCTATTGTTTTAATATCCTCTCGTTTTTGTCATGGCAACAGCCAAGCCTCCTGAGAAACAAAATGATCCGGTATGCTCTCGTTTTTAATCTTGAATATATTAGAGTTTCAGTTCTCGTTCGATAATGATTTTGTGTAGATTGTTACATTCGGTTAATTTTTACTGTGTCTTGGTAATTGTTCCATTCTGGTCTTGGTAATTGTTCCATCTGGGTAATCGATCAATTCTGTTAACTTTTACTGTGTCTGGGTAATCGATCAATTCTGTTAACTTTTACTGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCTGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCGGTTAACTTTTGATGTGTCTGGGTAATCGATCCATTCGGTTAACTTTTGATGTGTCTGGGTAATCGATACATTCTGTTAACTTTTGATGTGTCTGTGTAACTTGATTTTGTATGGATTGTTCCATTCTATCTTACATGTCTTGGTAACTTTTGACATGTTTATTAGTCGAGGGCTCCAACCAAAGCCTCGGCCATGTTCTCGGGAACTCAGGACAAATGTGCGGCCTGCTCAAAGACGGTTTATCCGTTGGAGAAGGTCGGTCAATAGTTCTTCGTGTTTTTCAAGCACAAAACATAGCATAGATCGAATAACATTGGCTAATCGAAACTATAATGTGGTTGACAAAAAAAAAAAAGGTGACTCTCGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCATCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCTGAGGCGGCGGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGACGCGGCCTGATTCTGCCTCCATCCAAGGCTATGAGAGTTGGGGAAGGGGCGGTGTTGTTTGAGCTACTTTTGTTGTTTTTTCTTATTTATTTATTTAATTTAATTTAATTTATTTTATTTATTTATTGGCCATCAAAGCATGGAAAACAATGTAACATAG

mRNA sequence

CAAGATATCCCTTCTCTTTCTATCCCATTCCACTTAGCTTCTTGCTTCTTTTCCTCTAATCTTGTCTGAGATCCCATCCTCAGACAACTTGGTAAACATTCCATTTGTTTGTCTTTTGTTGTTGTTGTTCTTCTTCTTCCCGCTCTTCTTCGTGTTCTTGTTTTTTCCCTTCTGTTCAAGTCAAGTCGTTCGATTCGAGATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCATAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGTACCCTTTCGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAACAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTCCAAACTTCCAAGCCTCCTGAGAAACAAAATGATCCGTCGAGGGCTCCAACCAAAGCCTCGGCCATGTTCTCGGGAACTCAGGACAAATGTGCGGCCTGCTCAAAGACGGTTTATCCGTTGGAGAAGGTGACTCTCGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCATCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCTGAGGCGGCGGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGACGCGGCCTGATTCTGCCTCCATCCAAGGCTATGAGAGTTGGGGAAGGGGCGGTGTTGTTTGAGCTACTTTTGTTGTTTTTTCTTATTTATTTATTTAATTTAATTTAATTTATTTTATTTATTTATTGGCCATCAAAGCATGGAAAACAATGTAACATAG

Coding sequence (CDS)

ATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCATAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGTACCCTTTCGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAACAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTCCAAACTTCCAAGCCTCCTGAGAAACAAAATGATCCGTCGAGGGCTCCAACCAAAGCCTCGGCCATGTTCTCGGGAACTCAGGACAAATGTGCGGCCTGCTCAAAGACGGTTTATCCGTTGGAGAAGGTGACTCTCGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCATCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCATTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCTGAGGCGGCGGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGACGCGGCCTGA

Protein sequence

MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEEDAA
Homology
[Close]
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 2.0e-82
Identity = 147/205 (71.71%), Postives = 168/205 (81.95%), Query Frame = 1 

Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEAAEDDEGGAQPQAEE--DAA 205
           T   +  E  E  A P  EE  DAA
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAA 207

[Close]
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match: PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.5e-80
Identity = 139/193 (72.02%), Postives = 161/193 (83.42%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F GTQDKCAAC KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKT--EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEAAED 191
               T PPE  ED
Sbjct: 181 ASGNTLPPEPTED 191

[Close]
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match: PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-78
Identity = 140/210 (66.67%), Postives = 167/210 (79.52%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEAAEDDEGGAQPQAEEDAA 205
                  +PP +  + D+  + P+A+ED A
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDA 210

[Close]
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 4.0e-70
Identity = 121/191 (63.35%), Postives = 157/191 (82.20%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 180
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKATTPPPEAA 189
           K+AT     AA
Sbjct: 181 KRATAAATAAA 191

[Close]
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-68
Identity = 116/182 (63.74%), Postives = 150/182 (82.42%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+      ++ P  +R P++ +  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANK 180
           VT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

[Close]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match: A0A0A0L4A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 5.3e-106
Identity = 187/203 (92.12%), Postives = 193/203 (95.07%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 202
            TPPPE AE++EG   AQPQA+E
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE 203

[Close]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match: A0A0A0L6A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.0e-93
Identity = 165/203 (81.28%), Postives = 182/203 (89.66%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQT K  +K ND +R P+K S+MFSGTQDKC+ C+KTVYPLEKV+
Sbjct: 61  HFEQLFKESGNFSKNFQT-KSSDKPNDLTRTPSKLSSMFSGTQDKCSVCTKTVYPLEKVS 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK 
Sbjct: 121 LEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKKT 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEDA 204
           TTPP +   D++    P++ E A
Sbjct: 181 TTPPADHT-DEDAEPSPRSGEQA 201

[Close]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match: V7B4U4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-89
Identity = 154/202 (76.24%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQT++  +KQN+ ++ P + S+MFSGT DKC+ CSKTVYPLEK+T
Sbjct: 61  HFEQLFKESGNFSKNFQTARSSDKQNEVNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAH GCHLTHSSYAALDGVLYC+HHF QLFM KGNY+HVL+AAAN+K 
Sbjct: 121 LEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKN 180

Query: 181 TTPPPEAAEDDEGGAQPQAEED 203
            TPPPE AE++E     + EE+
Sbjct: 181 ATPPPEPAEEEEAPKPEEPEEE 202

[Close]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match: A0A0L9U419_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.0e-88
Identity = 153/202 (75.74%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 410 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKP 469

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQT++  EKQN+ ++ P + S+MFSGT DKC+ CSKTVYPLEK+T
Sbjct: 470 HFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMT 529

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHK CFRCAH GCHLTHSSYA+LDGVLYC+HHF QLFM KGNY+HVL+AAAN+K 
Sbjct: 530 LEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKN 589

Query: 181 TTPPPEAAEDDEGGAQPQAEED 203
            TPPPE AE++E     +AE++
Sbjct: 590 ATPPPEPAEEEEPPKPEEAEQE 611

[Close]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match: A0A0S3RSW7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G084900 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.0e-88
Identity = 153/202 (75.74%), Postives = 178/202 (88.12%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQT++  EKQN+ ++ P + S+MFSGT DKC+ CSKTVYPLEK+T
Sbjct: 61  HFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHK CFRCAH GCHLTHSSYA+LDGVLYC+HHF QLFM KGNY+HVL+AAAN+K 
Sbjct: 121 LEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKN 180

Query: 181 TTPPPEAAEDDEGGAQPQAEED 203
            TPPPE AE++E     +AE++
Sbjct: 181 ATPPPEPAEEEEPPKPEEAEQE 202

[Close]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match: AT3G61230.1 (AT3G61230.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 306.6 bits (784), Expect = 1.1e-83
Identity = 147/205 (71.71%), Postives = 168/205 (81.95%), Query Frame = 1 

Query: 2   SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVTL 121
           FEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSGTQDKCAAC KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 181
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEAAEDDEGGAQPQAEE--DAA 205
           T   +  E  E  A P  EE  DAA
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAA 207

[Close]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match: AT1G01780.1 (AT1G01780.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-81
Identity = 139/193 (72.02%), Postives = 161/193 (83.42%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F GTQDKCAAC KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKT--EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEAAED 191
               T PPE  ED
Sbjct: 181 ASGNTLPPEPTED 191

[Close]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match: AT2G45800.1 (AT2G45800.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-79
Identity = 140/210 (66.67%), Postives = 167/210 (79.52%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 180
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEAAEDDEGGAQPQAEEDAA 205
                  +PP +  + D+  + P+A+ED A
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDA 210

[Close]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match: AT2G39900.1 (AT2G39900.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 265.8 bits (678), Expect = 2.2e-71
Identity = 121/191 (63.35%), Postives = 157/191 (82.20%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 180
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKATTPPPEAA 189
           K+AT     AA
Sbjct: 181 KRATAAATAAA 191

[Close]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match: AT3G55770.7 (AT3G55770.7 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 233.8 bits (595), Expect = 9.4e-62
Identity = 114/216 (52.78%), Postives = 147/216 (68.06%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAMFSGTQDKCAACSKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+      ++ P  +R P++ +  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTLE----------------------GECYH------------KNCFRCAHGGCHLTHSS 180
           +                         G CY             K+CF+C+HGGC ++ S+
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

[Close]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match: gi|659075313|ref|XP_008438078.1| (PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo])

HSP 1 Score: 395.2 bits (1014), Expect = 6.9e-107
Identity = 188/203 (92.61%), Postives = 195/203 (96.06%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAAC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 202
           TTPPPE AE++EG   AQPQA+E
Sbjct: 181 TTPPPEPAEEEEGATEAQPQADE 203

[Close]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match: gi|778677278|ref|XP_011650764.1| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 7.7e-106
Identity = 187/203 (92.12%), Postives = 193/203 (95.07%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFSGTQDKCAACSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEAAEDDEGG--AQPQAEE 202
            TPPPE AE++EG   AQPQA+E
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE 203

[Close]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match: gi|659075311|ref|XP_008438077.1| (PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo])

HSP 1 Score: 391.3 bits (1004), Expect = 1.0e-105
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQND-PSRAPTKASAMFSGTQDKCAACSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KP EKQND  SRAP+K S+MFSGTQDKCAAC+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEAAEDDEGG--AQPQAEE 202
           ATTPPPE AE++EG   AQPQA+E
Sbjct: 181 ATTPPPEPAEEEEGATEAQPQADE 204

[Close]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match: gi|778677275|ref|XP_004134333.2| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 387.9 bits (995), Expect = 1.1e-104
Identity = 187/204 (91.67%), Postives = 193/204 (94.61%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQND-PSRAPTKASAMFSGTQDKCAACSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQ +KP EKQND  SRAP+K S+MFSGTQDKCAACSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEAAEDDEGG--AQPQAEE 202
           A TPPPE AE++EG   AQPQA+E
Sbjct: 181 APTPPPEPAEEEEGATEAQPQADE 204

[Close]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match: gi|659075295|ref|XP_008438068.1| (PREDICTED: pollen-specific protein SF3-like [Cucumis melo])

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 168/203 (82.76%), Postives = 183/203 (90.15%), Query Frame = 1 

Query: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120
           HFEQLFKESGNFSKNFQT KP E+QND +R P+K S+MF GTQDKC+ C+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQT-KPSERQNDLTRTPSKLSSMFCGTQDKCSVCTKTVYPLEKVT 120

Query: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180
           LEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK 
Sbjct: 121 LEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKKT 180

Query: 181 TTPPPEAAEDDEGGAQPQAEEDA 204
           TTPP E   D++    P++ E A
Sbjct: 181 TTPPAEHT-DEDAEPSPRSGEQA 201

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g01620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PLI2C_ARATH2.0e-8271.71LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1[more]
PLI2B_ARATH5.5e-8072.02LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1[more]
PLI2A_ARATH4.0e-7866.67LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1[more]
WLI2A_ARATH4.0e-7063.35LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1[more]
WLI2B_ARATH1.7e-6863.74LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1[more]
BLAST of Cp4.1LG08g01620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4A1_CUCSA5.3e-10692.12Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1[more]
A0A0A0L6A8_CUCSA1.0e-9381.28Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1[more]
V7B4U4_PHAVU1.6e-8976.24Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1[more]
A0A0L9U419_PHAAN1.0e-8875.74Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1[more]
A0A0S3RSW7_PHAAN1.0e-8875.74Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G084900 PE=... [more]
BLAST of Cp4.1LG08g01620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61230.11.1e-8371.71 GATA type zinc finger transcription factor family protein[more]
AT1G01780.13.1e-8172.02 GATA type zinc finger transcription factor family protein[more]
AT2G45800.12.2e-7966.67 GATA type zinc finger transcription factor family protein[more]
AT2G39900.12.2e-7163.35 GATA type zinc finger transcription factor family protein[more]
AT3G55770.79.4e-6252.78 GATA type zinc finger transcription factor family protein[more]
BLAST of Cp4.1LG08g01620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659075313|ref|XP_008438078.1|6.9e-10792.61PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo][more]
gi|778677278|ref|XP_011650764.1|7.7e-10692.12PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus... [more]
gi|659075311|ref|XP_008438077.1|1.0e-10592.16PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo][more]
gi|778677275|ref|XP_004134333.2|1.1e-10491.67PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus... [more]
gi|659075295|ref|XP_008438068.1|2.1e-9582.76PREDICTED: pollen-specific protein SF3-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g01620.1Cp4.1LG08g01620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeGENE3DG3DSA:2.10.110.10coord: 4..71
score: 1.7E-21coord: 98..168
score: 2.4
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 10..65
score: 3.2E-13coord: 106..161
score: 8.3
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 9..61
score: 1.1E-12coord: 105..157
score: 4.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 10..44
scor
IPR001781Zinc finger, LIM-typePROFILEPS50023LIM_DOMAIN_2coord: 8..68
score: 13.484coord: 104..164
score: 12
NoneNo IPR availablePANTHERPTHR24206FAMILY NOT NAMEDcoord: 1..203
score: 1.7E
NoneNo IPR availablePANTHERPTHR24206:SF22PROTEIN PLIM2Acoord: 1..203
score: 1.7E
NoneNo IPR availableunknownSSF57716Glucocorticoid receptor-like (DNA-binding domain)coord: 3..35
score: 8.27E-9coord: 132..171
score: 8.84E-14coord: 36..76
score: 6.3E-15coord: 98..131
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g01620Cucsa.258170Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g01620CmaCh14G020190Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g01620CmoCh14G020810Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g01620Lsi05G020180Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g01620Carg14794Silver-seed gourdcarcpeB0885
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g01620Cp4.1LG03g16840Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g01620Cucurbita maxima (Rimu)cmacpeB854
Cp4.1LG08g01620Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g01620Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g01620Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g01620Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g01620Watermelon (97103) v1cpewmB845
Cp4.1LG08g01620Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g01620Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g01620Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g01620Silver-seed gourdcarcpeB0923
Cp4.1LG08g01620Cucumber (Chinese Long) v3cpecucB1056
Cp4.1LG08g01620Wax gourdcpewgoB1106
Cp4.1LG08g01620Wax gourdcpewgoB1113