Cp4.1LG08g00540 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g00540
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTINY-like protein
LocationCp4.1LG08 : 4179917 .. 4180147 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTCTGTTTTCTGGTAGCGACGGCGGAGAAAGAGCAGAGGACTCCACGAACTCCCCGTCGACGGCCGCCAGTGATGAGACATTTTTCGATTTGCCTGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTGTCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTCTCCGGCTGGAAGAGCCTTCGTTTTGGGAGACCATTTAA

mRNA sequence

ATGGAGACTCTGTTTTCTGGTAGCGACGGCGGAGAAAGAGCAGAGGACTCCACGAACTCCCCGTCGACGGCCGCCAGTGATGAGACATTTTTCGATTTGCCTGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTGTCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTCTCCGGCTGGAAGAGCCTTCGTTTTGGGAGACCATTTAA

Coding sequence (CDS)

ATGGAGACTCTGTTTTCTGGTAGCGACGGCGGAGAAAGAGCAGAGGACTCCACGAACTCCCCGTCGACGGCCGCCAGTGATGAGACATTTTTCGATTTGCCTGATCTGTTCGTCGGAAGTTCTGATTTGAAAGATGGGTTTCTTTGTCATTCTTCGTTATGGCAGTTTTGTGCGGCGGCCGATCATTCTGGTCTCCGGCTGGAAGAGCCTTCGTTTTGGGAGACCATTTAA

Protein sequence

METLFSGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGLRLEEPSFWETI
Homology
[Close]
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match: A0A0A0L8C6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118010 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-27
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 2   ETLFSGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAAD 61
           E LF GSDGGER EDSTNS ST A DET FDLPDL +GSSDLKDGF+ HSSLWQFCAAAD
Sbjct: 156 EALFPGSDGGERTEDSTNSTSTVAGDETLFDLPDLVMGSSDLKDGFVYHSSLWQFCAAAD 215

Query: 62  HSGLRLEEPSFWETI 77
           H+G RLEEPSFWE I
Sbjct: 216 HNGYRLEEPSFWELI 230

[Close]
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match: B9GP98_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14210g PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.7e-07
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 12  ERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGLRLEEPS 71
           +  ++S++SPST  SD+T FDLPDLF+      DGF  +SS WQ CAA   +G RL EP 
Sbjct: 212 DNTQESSSSPSTD-SDDTLFDLPDLFIDGVHHSDGFCYYSSSWQLCAA--DTGFRLGEPF 271

Query: 72  FWE 75
            WE
Sbjct: 272 LWE 271

[Close]
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match: A0A061DUB9_THECC (Integrase-type DNA-binding superfamily protein, putative OS=Theobroma cacao GN=TCM_005639 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 6   SGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGL 65
           S +   +  ++S++SPS    D+T FDLPDL + ++D  DGF  +SS WQ CA    +G 
Sbjct: 243 SQTSASDNVQESSSSPSID-DDDTLFDLPDLMIDATDRSDGFCSYSSTWQICAV--DAGF 302

Query: 66  RLEEPSFWE 75
           RLEEP  WE
Sbjct: 303 RLEEPFSWE 308

[Close]
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match: B9RD34_RICCO (Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1609170 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 1 

Query: 12  ERAEDSTNSPSTAA--------SDETFFDLPDLFVGSSDL-KDGFLCHSSLWQFCAAADH 71
           +   +ST+SPSTA         SD+T FDLPDLFV   D  K+ FL +S  WQ CAA   
Sbjct: 203 DNTRESTSSPSTATTIATTSNDSDDTLFDLPDLFVEGIDRHKNDFLHYSPSWQLCAA--D 262

Query: 72  SGLRLEEPSFWE 75
           +G RLEEP  WE
Sbjct: 263 TGFRLEEPYLWE 272

[Close]
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match: A9PL79_POPTR (TINY-like protein OS=Populus trichocarpa GN=TINYL10 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-06
Identity = 29/63 (46.03%), Postives = 40/63 (63.49%), Query Frame = 1 

Query: 12  ERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGLRLEEPS 71
           +  ++S++SPST   D+  FDLPDLF+   +  DGF  +S  WQ C+A   +G RLEEP 
Sbjct: 209 DNIQESSSSPSTDVDDK-LFDLPDLFIDGVNHSDGFCYYSPPWQLCSA--DTGFRLEEPF 268

Query: 72  FWE 75
            WE
Sbjct: 269 LWE 268

[Close]
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match: gi|659074817|ref|XP_008437812.1| (PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1 [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 3.4e-27
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 2   ETLFSGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAAD 61
           E LF GSDGGER EDSTNSPST A DET FDLPDL +GSSD KDGF+ HSSLWQFCAAAD
Sbjct: 157 EPLFPGSDGGERTEDSTNSPSTIAGDETLFDLPDLVIGSSDSKDGFVYHSSLWQFCAAAD 216

Query: 62  HSGLRLEEPSFWETI 77
           H+G RLEEPSFWE I
Sbjct: 217 HNGFRLEEPSFWELI 231

[Close]
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match: gi|449433008|ref|XP_004134290.1| (PREDICTED: ethylene-responsive transcription factor ERF039 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 7.7e-27
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 2   ETLFSGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAAD 61
           E LF GSDGGER EDSTNS ST A DET FDLPDL +GSSDLKDGF+ HSSLWQFCAAAD
Sbjct: 156 EALFPGSDGGERTEDSTNSTSTVAGDETLFDLPDLVMGSSDLKDGFVYHSSLWQFCAAAD 215

Query: 62  HSGLRLEEPSFWETI 77
           H+G RLEEPSFWE I
Sbjct: 216 HNGYRLEEPSFWELI 230

[Close]
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match: gi|566157984|ref|XP_002301249.2| (hypothetical protein POPTR_0002s14210g [Populus trichocarpa])

HSP 1 Score: 61.6 bits (148), Expect = 6.8e-07
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = 1 

Query: 12  ERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGLRLEEPS 71
           +  ++S++SPST  SD+T FDLPDLF+      DGF  +SS WQ CAA   +G RL EP 
Sbjct: 212 DNTQESSSSPSTD-SDDTLFDLPDLFIDGVHHSDGFCYYSSSWQLCAA--DTGFRLGEPF 271

Query: 72  FWE 75
            WE
Sbjct: 272 LWE 271

[Close]
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match: gi|590723607|ref|XP_007052232.1| (Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 

Query: 6   SGSDGGERAEDSTNSPSTAASDETFFDLPDLFVGSSDLKDGFLCHSSLWQFCAAADHSGL 65
           S +   +  ++S++SPS    D+T FDLPDL + ++D  DGF  +SS WQ CA    +G 
Sbjct: 243 SQTSASDNVQESSSSPSID-DDDTLFDLPDLMIDATDRSDGFCSYSSTWQICAV--DAGF 302

Query: 66  RLEEPSFWE 75
           RLEEP  WE
Sbjct: 303 RLEEPFSWE 308

[Close]
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match: gi|255541118|ref|XP_002511623.1| (PREDICTED: ethylene-responsive transcription factor ERF034 [Ricinus communis])

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 36/72 (50.00%), Postives = 43/72 (59.72%), Query Frame = 1 

Query: 12  ERAEDSTNSPSTAA--------SDETFFDLPDLFVGSSDL-KDGFLCHSSLWQFCAAADH 71
           +   +ST+SPSTA         SD+T FDLPDLFV   D  K+ FL +S  WQ CAA   
Sbjct: 203 DNTRESTSSPSTATTIATTSNDSDDTLFDLPDLFVEGIDRHKNDFLHYSPSWQLCAA--D 262

Query: 72  SGLRLEEPSFWE 75
           +G RLEEP  WE
Sbjct: 263 TGFRLEEPYLWE 272

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g00540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g00540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8C6_CUCSA5.4e-2781.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G118010 PE=4 SV=1[more]
B9GP98_POPTR4.7e-0750.79Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14210g PE=4 SV=1[more]
A0A061DUB9_THECC1.0e-0644.93Integrase-type DNA-binding superfamily protein, putative OS=Theobroma cacao GN=T... [more]
B9RD34_RICCO1.4e-0650.00Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1609170 PE=4 S... [more]
A9PL79_POPTR8.9e-0646.03TINY-like protein OS=Populus trichocarpa GN=TINYL10 PE=4 SV=1[more]
BLAST of Cp4.1LG08g00540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG08g00540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074817|ref|XP_008437812.1|3.4e-2781.33PREDICTED: ethylene-responsive transcription factor ERF038-like isoform X1 [Cucu... [more]
gi|449433008|ref|XP_004134290.1|7.7e-2781.33PREDICTED: ethylene-responsive transcription factor ERF039 [Cucumis sativus][more]
gi|566157984|ref|XP_002301249.2|6.8e-0750.79hypothetical protein POPTR_0002s14210g [Populus trichocarpa][more]
gi|590723607|ref|XP_007052232.1|1.5e-0644.93Integrase-type DNA-binding superfamily protein, putative [Theobroma cacao][more]
gi|255541118|ref|XP_002511623.1|2.0e-0650.00PREDICTED: ethylene-responsive transcription factor ERF034 [Ricinus communis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g00540.1Cp4.1LG08g00540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g00540CmaCh06G009730Cucurbita maxima (Rimu)cmacpeB855
Cp4.1LG08g00540CmoCh06G009950Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g00540Cla021101Watermelon (97103) v1cpewmB845
Cp4.1LG08g00540Csa3G118010Cucumber (Chinese Long) v2cpecuB862
Cp4.1LG08g00540ClCG05G000340Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g00540CSPI03G07370Wild cucumber (PI 183967)cpecpiB864
Cp4.1LG08g00540Lsi05G021890Bottle gourd (USVL1VR-Ls)cpelsiB714
Cp4.1LG08g00540MELO3C005972.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g00540CsaV3_3G007490Cucumber (Chinese Long) v3cpecucB1058
Cp4.1LG08g00540Bhi01G000421Wax gourdcpewgoB1105
Cp4.1LG08g00540CsGy3G007500Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g00540Carg17671Silver-seed gourdcarcpeB0194
Cp4.1LG08g00540Carg24163Silver-seed gourdcarcpeB0145
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g00540Cp4.1LG03g15800Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g00540Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g00540Cucurbita maxima (Rimu)cmacpeB023
Cp4.1LG08g00540Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g00540Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g00540Melon (DHL92) v3.5.1cpemeB815