Cp4.1LG07g11370 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g11370
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDynein light chain-like protein
LocationCp4.1LG07 : 9651282 .. 9652708 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAACCAAACTATGCTCTCTCGAGATCGTGATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAACGTATTGTTCTATATCGACAAACTTTTTTTTTAGCTTCGCAGATCGTTAACGGATTTCAAATTTTTGAAAAATTAAAGAACTGGGTCTCGTAACACGAACGAATGTTATTGAAATCAAACAATTTTCAAACGGGCATAGTTTTTTTTCTTTTCGAGAATGAAAATTGTAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTTGAGACATAATTGAAGTGGCCAATAGGAAAAGGATCCGACAAGGCATGTGTTTAGATGAGTAAACACATAGTGATTAGCAAATATTTTAAGCTAACAATTTGATATATTCATTCAAATGGAGTCCTTCCTTTTTCATGTAATCCATGTGCATTACTTCATTGCTTAATAATTTTTAATTTTTTCAATCATATTCTAAAATTTTCCCTTATTTCTAAATTAATATCACGAAGATTCGTTAAGAGATGAGAACTGATCAGGGTTATGGAAATTTTGAGATCGAGATTGAATCGTAATAAAAAAAATGATTTTGAGAAGTTGTTTTAGTCCCTCCTGTATTGTTAGGTTTCTGTCTAATACGTTCGATAACTTGAAAAAGTTTCTAATAGTTTTGTTAATTTTTGAAAAAAATCATAATATGTTACAAATTTATTAGACATAAAATTAAAAGTGTACGAGTGCTCAAACCCGAAAGAAATTAAAAAAAAATATATTTTTTAATCTATATAAAAAAGAAAAAACTAATTGAATTGGGCCTAATGCAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGAATGTAAAGGCAACTTTTATTATATTGTACAAAACCAATTTATTCTTATTATTTCTTC

mRNA sequence

TGAACCAAACTATGCTCTCTCGAGATCGTGATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGAATGTAAAGGCAACTTTTATTATATTGTACAAAACCAATTTATTCTTATTATTTCTTC

Coding sequence (CDS)

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGGGATGGAGCTCGTGACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGTATCTGTTTACAAGTATAATTGGTTGGGTAGAAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAGGCGGAGGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAGATGATGCAAATTCAGGCCTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAATTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAAATTCAGAAAGCTACTGAATGA

Protein sequence

MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKATE
Homology
[Close]
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match: DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1 

Query: 104 VKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFG 163
           + V  +DMP+ MQ  A  C  ++++  E    + +A  +KKEFDK + P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 164 SFVTHSTGCFLYFSMEELYILLFR 188
           SFVTH T  F+YF++ +  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

[Close]
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match: DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DMPE MQ  A  CA ++   LEK +  K +A  +KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQA---LEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

[Close]
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match: DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-13
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  A  CA ++   LEK +  K +A  +KKEFD+ H P WHCIVG +FGS+VT
Sbjct: 13  ADMSEEMQADAVDCATQA---LEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVT 72

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 73  HETKHFIYFYLGQVAILLFKS 90

[Close]
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match: DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  +  CA ++   LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQA---LEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match: DYL1_MACFA (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1 

Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 168
           +DM E MQ  +  CA ++   LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQA---LEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 169 HSTGCFLYFSMEELYILLFRT 189
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match: A0A0A0LKY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.2e-76
Identity = 162/203 (79.80%), Postives = 171/203 (84.24%), Query Frame = 1 

Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVS---VDKVSVYKYNWLGRKSKKVVHQHGG 60
           MATLNKQMKG FKSFYKSRDG R+V + E +S   VDK S+YKYNWLGRKSKK   QHGG
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  SRGAKGGGDGDGGGGGGTE-----GRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120
                GGG   GGG GG       GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMP
Sbjct: 61  -----GGG---GGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120

Query: 121 EMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGC 180
           E+MQIQAFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGC
Sbjct: 121 EIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGC 180

Query: 181 FLYFSMEELYILLFRTKIQKATE 196
           FLYFSME+LYILLFRTKIQKA E
Sbjct: 181 FLYFSMEKLYILLFRTKIQKAIE 194

[Close]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match: A0A061GPB7_THECC (Axonemal dynein light chain, putative OS=Theobroma cacao GN=TCM_038044 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.8e-50
Identity = 119/195 (61.03%), Postives = 144/195 (73.85%), Query Frame = 1 

Query: 1   MATLNKQMKGGFKS-FYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKK--VVHQHGG 60
           MAT   ++K GF S FY S   +   ++ E  +V  +     N L +K +    + Q G 
Sbjct: 1   MATKENKLKKGFLSTFYWSSTKSHKPKS-EPAAVANIKPVSQNSLLKKLENCHTIEQAGP 60

Query: 61  SRGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQI 120
            +  K   +G GGGGGG E +  +VEGRKSVSHVETNL SV +FLQVKVLVSDMP  MQ+
Sbjct: 61  RKIEK---EGVGGGGGGGEAK--LVEGRKSVSHVETNLSSVIAFLQVKVLVSDMPGFMQV 120

Query: 121 QAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFS 180
            AFRCARR+YDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGS+FGSFVTHSTGCFLYFS
Sbjct: 121 HAFRCARRTYDSLEKFSSKHMAYNMKKEFDKVYGPAWHCIVGSNFGSFVTHSTGCFLYFS 180

Query: 181 MEELYILLFRTKIQK 193
           ME+LYIL+F+TK+Q+
Sbjct: 181 MEKLYILVFKTKVQR 189

[Close]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match: A0A059CWR4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C04183 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.7e-48
Identity = 95/116 (81.90%), Postives = 108/116 (93.10%), Query Frame = 1 

Query: 80  MVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMA 139
           MVVE RKSVSHVETNL SV +FLQVKV+V+DMP  MQ+ AFRCARR+YDSLEK SSK MA
Sbjct: 1   MVVEARKSVSHVETNLASVVAFLQVKVMVADMPGFMQVHAFRCARRTYDSLEKFSSKHMA 60

Query: 140 YNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKATE 196
           YN+KKEFDKV+GPAWHCIVGS+FGSFVTH+TGCFLYFSME+LYILLF+TK+QKAT+
Sbjct: 61  YNMKKEFDKVYGPAWHCIVGSNFGSFVTHATGCFLYFSMEKLYILLFKTKVQKATD 116

[Close]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match: B9SEP6_RICCO (Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_0221220 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-47
Identity = 96/118 (81.36%), Postives = 108/118 (91.53%), Query Frame = 1 

Query: 76  EGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSS 135
           E   ++VE RKSVSHVETNL SVASFLQVKVLV+DMP  MQI AFRCARR+YDSL+K SS
Sbjct: 63  ERGNVMVEARKSVSHVETNLASVASFLQVKVLVTDMPGFMQIHAFRCARRTYDSLDKFSS 122

Query: 136 KLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKA 194
           K +AYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSME+LYIL+F+TK+QKA
Sbjct: 123 KHIAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILVFKTKVQKA 180

[Close]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match: A5BHH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011677 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-47
Identity = 114/190 (60.00%), Postives = 140/190 (73.68%), Query Frame = 1 

Query: 11  GFKSFYKSRDGARDVQACESVSVDKVSVYK---YNWLGRKSKKVVH--QHGGSRGAKGGG 70
           G    Y S +G       E  S +++SV K   ++W  RKSK  +   Q+GG R  +GGG
Sbjct: 10  GLLCVYSSGEG-------EKKSEERLSVKKQVGWSWGLRKSKTCLEKAQYGGERVVEGGG 69

Query: 71  DGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARR 130
              GGGG       +VVE RKSVS +ETN+ SVA+FLQVKVLV+DMP  MQ+ AFRCARR
Sbjct: 70  ---GGGG-------VVVEARKSVSCIETNVSSVAAFLQVKVLVTDMPGFMQVHAFRCARR 129

Query: 131 SYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILL 190
           ++DSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTG FLYFSME+L+IL+
Sbjct: 130 TFDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGGFLYFSMEKLFILV 182

Query: 191 FRTKIQKATE 196
           F+TK+Q+A +
Sbjct: 190 FKTKVQRALD 182

[Close]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match: AT5G20110.1 (AT5G20110.1 Dynein light chain type 1 family protein)

HSP 1 Score: 159.5 bits (402), Expect = 2.2e-39
Identity = 82/128 (64.06%), Postives = 98/128 (76.56%), Query Frame = 1 

Query: 71  GGGGTEGRKMVVEGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRS 130
           GGG  E      EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFRCAR +
Sbjct: 86  GGGAAE------EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMT 145

Query: 131 YDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLF 190
            DSLEK SSK MA+NLKKEFDK +GPAWHCIVGSSFGSFVTHSTGCF+YFSM++LY+LLF
Sbjct: 146 LDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLF 205

Query: 191 RTKIQKAT 195
           +TK++ A+
Sbjct: 206 KTKVRPAS 207

[Close]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match: AT1G23220.1 (AT1G23220.1 Dynein light chain type 1 family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 1 

Query: 104 VKVLVSDMPEMMQIQAFRCARRSYDSLE-KLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 163
           V+V  SDMP   Q +AF  +R   ++   K  +K +A+ LKK+FD  +GPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 164 GSFVTHSTGCFLYFSMEELYILLFRTKIQ 192
           GS+VTHSTG FLYF ++++Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match: AT3G16120.1 (AT3G16120.1 Dynein light chain type 1 family protein)

HSP 1 Score: 77.8 bits (190), Expect = 8.3e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1 

Query: 103 QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 162
           + KV  +DMP  MQ+QA + A +S D  +   S  +A ++KKEFD+ +G  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 163 GSFVTHSTGCFLYFSMEELYILLFR 188
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match: AT4G15930.1 (AT4G15930.1 Dynein light chain type 1 family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.1e-14
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 73  GGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEK 132
           GG   + ++ + R S+  VE    S  +  +  +  +DM + MQ +A   A  ++   EK
Sbjct: 12  GGAPAQTILDDRRSSLPEVEA---SPPAGKRAVIKSADMKDDMQKEAIEIAISAF---EK 71

Query: 133 LS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRT 189
            S  K +A N+KKEFDK HG  WHCIVG +FGS+VTH T  F+YF +++  +LLF++
Sbjct: 72  YSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVTHETNHFVYFYLDQKAVLLFKS 122

[Close]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match: AT4G27360.1 (AT4G27360.1 Dynein light chain type 1 family protein)

HSP 1 Score: 74.7 bits (182), Expect = 7.0e-14
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 1 

Query: 109 SDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTH 168
           +DM + M+  A   A ++ D  +      +A  +KKEFD+ +G  W CIVG+ FGSFVTH
Sbjct: 11  TDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTH 70

Query: 169 STGCFLYFSMEELYILLFRTKI 191
            +GCF++FS+  L ILLF+  +
Sbjct: 71  CSGCFIHFSVGSLTILLFKGSV 92

[Close]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: gi|700205547|gb|KGN60666.1| (hypothetical protein Csa_2G006120 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75
Identity = 162/203 (79.80%), Postives = 171/203 (84.24%), Query Frame = 1 

Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVS---VDKVSVYKYNWLGRKSKKVVHQHGG 60
           MATLNKQMKG FKSFYKSRDG R+V + E +S   VDK S+YKYNWLGRKSKK   QHGG
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGG 60

Query: 61  SRGAKGGGDGDGGGGGGTE-----GRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120
                GGG   GGG GG       GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMP
Sbjct: 61  -----GGG---GGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120

Query: 121 EMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGC 180
           E+MQIQAFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGC
Sbjct: 121 EIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGC 180

Query: 181 FLYFSMEELYILLFRTKIQKATE 196
           FLYFSME+LYILLFRTKIQKA E
Sbjct: 181 FLYFSMEKLYILLFRTKIQKAIE 194

[Close]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: gi|659071014|ref|XP_008457739.1| (PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 5.7e-74
Identity = 159/199 (79.90%), Postives = 168/199 (84.42%), Query Frame = 1 

Query: 1   MATLNKQMKGGFKSFYKSRDGA-RDVQACESVS---VDKVSVYKYNWLGRKSKKVVHQHG 60
           MATLNKQMKG FKSFYKSRDG  R+V + E VS   VDK S+YKYNWLGRKSKK   QH 
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GSRGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQ 120
           G  GA G G+   GG      RK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQ
Sbjct: 61  GGGGAGGIGEEIMGG------RKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQ 120

Query: 121 IQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYF 180
           IQAFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYF
Sbjct: 121 IQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYF 180

Query: 181 SMEELYILLFRTKIQKATE 196
           SME+LYILLFRTKIQKA E
Sbjct: 181 SMEKLYILLFRTKIQKAIE 192

[Close]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: gi|778673957|ref|XP_004139419.2| (PREDICTED: LOW QUALITY PROTEIN: dynein light chain, cytoplasmic [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 133/195 (68.21%), Postives = 140/195 (71.79%), Query Frame = 1 

Query: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKG FKSFYKSRDG R+                + W  R      H  G +  
Sbjct: 1   MATLNKQMKG-FKSFYKSRDGGRN----------------WRWWCRG-----HPRGDNGR 60

Query: 61  AKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
            K GG                 EGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQIQAF
Sbjct: 61  KKSGG----------------XEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           R ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSME+
Sbjct: 121 RTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEK 157

Query: 181 LYILLFRTKIQKATE 196
           LYILLFRTKIQKA E
Sbjct: 181 LYILLFRTKIQKAIE 157

[Close]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: gi|702306723|ref|XP_010049977.1| (PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Eucalyptus grandis])

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-53
Identity = 127/213 (59.62%), Postives = 145/213 (68.08%), Query Frame = 1 

Query: 1   MATLNKQMK-GGFKSFYKSRD--GARDVQACESVSVDKVSVY--KY---NWLGRKSKKVV 60
           MAT  K  K G F +FYK     GA      + V+    S +  KY    W  RKS+   
Sbjct: 1   MATHEKPKKLGSFMNFYKPSAVAGATSTGRIDCVAKSDPSAFTNKYITRGWTLRKSRNCP 60

Query: 61  HQHGGS----------RGAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFL 120
               G           RG  GGG   GGGGGG     MVVE RKSVSHVETNL SV +FL
Sbjct: 61  ESKRGGDQQLVSANSGRGGDGGGGSGGGGGGGGGNANMVVEARKSVSHVETNLASVVAFL 120

Query: 121 QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 180
           QVKV+V+DMP  MQ+ AFRCARR+YDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGS+F
Sbjct: 121 QVKVMVADMPGFMQVHAFRCARRTYDSLEKFSSKHMAYNMKKEFDKVYGPAWHCIVGSNF 180

Query: 181 GSFVTHSTGCFLYFSMEELYILLFRTKIQKATE 196
           GSFVTH+TGCFLYFSME+LYILLF+TK+QKAT+
Sbjct: 181 GSFVTHATGCFLYFSMEKLYILLFKTKVQKATD 213

[Close]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match: gi|1009170825|ref|XP_015866406.1| (PREDICTED: uncharacterized protein LOC107403987 [Ziziphus jujuba])

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-51
Identity = 123/203 (60.59%), Postives = 144/203 (70.94%), Query Frame = 1 

Query: 1   MATLNKQ--MKGGFKSFYKSRDGARDVQACESVSVDKVSV-YKYNWLGRKS---KKVVHQ 60
           MAT+N++   +G F S YK   G R     +   VDK  +    +WL RK    K+   Q
Sbjct: 1   MATINEKHPKRGSFMSIYKPSSGNRIKTESKPSLVDKNYINVSRSWLFRKQRGRKEAEDQ 60

Query: 61  HGGSR--GAKGGGDGDGGGGGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMP 120
            G  R   A    + +  GG G E   +VVE RKSVSHVETNL SVASFLQVKVLVSDMP
Sbjct: 61  FGSGREPAAAARNNEEERGGQGREEGMVVVEARKSVSHVETNLASVASFLQVKVLVSDMP 120

Query: 121 EMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGC 180
             MQ+ AFRC RR+YDSLEK S+K MAYN+KKEFDKV+GPAWHCIVGS+FGSFVTHSTGC
Sbjct: 121 GFMQVHAFRCCRRTYDSLEKFSAKHMAYNMKKEFDKVYGPAWHCIVGSNFGSFVTHSTGC 180

Query: 181 FLYFSMEELYILLFRTKIQKATE 196
           FLYFSME+LYILLF+TK+QKA +
Sbjct: 181 FLYFSMEKLYILLFKTKVQKAAD 203

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g11370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DYL_DICDI2.5e-1345.24Dynein light chain, cytoplasmic OS=Dictyostelium discoideum GN=dlcB PE=3 SV=1[more]
DYL1_HELCR3.3e-1349.38Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina PE=3 SV=... [more]
DYL1_CHLRE5.6e-1349.38Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 ... [more]
DYL1_HUMAN1.2e-1248.15Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1 SV=1[more]
DYL1_MACFA1.2e-1248.15Dynein light chain 1, cytoplasmic OS=Macaca fascicularis GN=DYNLL1 PE=3 SV=1[more]
BLAST of Cp4.1LG07g11370 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKY0_CUCSA7.2e-7679.80Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006120 PE=4 SV=1[more]
A0A061GPB7_THECC6.8e-5061.03Axonemal dynein light chain, putative OS=Theobroma cacao GN=TCM_038044 PE=4 SV=1[more]
A0A059CWR4_EUCGR1.7e-4881.90Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C04183 PE=4 SV=1[more]
B9SEP6_RICCO1.8e-4781.36Axonemal dynein light chain, putative OS=Ricinus communis GN=RCOM_0221220 PE=4 S... [more]
A5BHH6_VITVI3.1e-4760.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011677 PE=4 SV=1[more]
BLAST of Cp4.1LG07g11370 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20110.12.2e-3964.06 Dynein light chain type 1 family protein[more]
AT1G23220.11.7e-2051.69 Dynein light chain type 1 family protein[more]
AT3G16120.18.3e-1543.53 Dynein light chain type 1 family protein[more]
AT4G15930.14.1e-1439.32 Dynein light chain type 1 family protein[more]
AT4G27360.17.0e-1442.68 Dynein light chain type 1 family protein[more]
BLAST of Cp4.1LG07g11370 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205547|gb|KGN60666.1|1.0e-7579.80hypothetical protein Csa_2G006120 [Cucumis sativus][more]
gi|659071014|ref|XP_008457739.1|5.7e-7479.90PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo][more]
gi|778673957|ref|XP_004139419.2|1.1e-5668.21PREDICTED: LOW QUALITY PROTEIN: dynein light chain, cytoplasmic [Cucumis sativus... [more]
gi|702306723|ref|XP_010049977.1|1.4e-5359.62PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Eucalyptus gra... [more]
gi|1009170825|ref|XP_015866406.1|1.8e-5160.59PREDICTED: uncharacterized protein LOC107403987 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030286dynein complex
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0030286 dynein complex
cellular_component GO:0031514 motile cilium
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g11370.1Cp4.1LG07g11370.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001372Dynein light chain, type 1/2GENE3DG3DSA:3.30.740.10coord: 104..188
score: 1.0
IPR001372Dynein light chain, type 1/2PANTHERPTHR11886DYNEIN LIGHT CHAINcoord: 72..195
score: 1.7
IPR001372Dynein light chain, type 1/2PFAMPF01221Dynein_lightcoord: 104..188
score: 1.1
IPR001372Dynein light chain, type 1/2SMARTSM01375Dynein_light_2coord: 99..188
score: 3.0
NoneNo IPR availablePANTHERPTHR11886:SF51SUBFAMILY NOT NAMEDcoord: 72..195
score: 1.7
NoneNo IPR availableunknownSSF54648DLCcoord: 101..188
score: 2.35

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g11370Cucsa.131960Cucumber (Gy14) v1cgycpeB0355
Cp4.1LG07g11370CmaCh12G012180Cucurbita maxima (Rimu)cmacpeB206
Cp4.1LG07g11370CmaCh05G013040Cucurbita maxima (Rimu)cmacpeB798
Cp4.1LG07g11370CmoCh12G012460Cucurbita moschata (Rifu)cmocpeB178
Cp4.1LG07g11370Cla016724Watermelon (97103) v1cpewmB815
Cp4.1LG07g11370Csa2G006120Cucumber (Chinese Long) v2cpecuB812
Cp4.1LG07g11370MELO3C004518Melon (DHL92) v3.5.1cpemeB778
Cp4.1LG07g11370ClCG11G002920Watermelon (Charleston Gray)cpewcgB718
Cp4.1LG07g11370CSPI02G01600Wild cucumber (PI 183967)cpecpiB813
Cp4.1LG07g11370Lsi11G003040Bottle gourd (USVL1VR-Ls)cpelsiB655
Cp4.1LG07g11370MELO3C004518.2Melon (DHL92) v3.6.1cpemedB914
Cp4.1LG07g11370CsaV3_2G002750Cucumber (Chinese Long) v3cpecucB1006
Cp4.1LG07g11370Bhi06G001676Wax gourdcpewgoB1008
Cp4.1LG07g11370CsGy2G001620Cucumber (Gy14) v2cgybcpeB262
Cp4.1LG07g11370Carg10895Silver-seed gourdcarcpeB0815
Cp4.1LG07g11370Carg17514Silver-seed gourdcarcpeB0362
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g11370Cp4.1LG11g10930Cucurbita pepo (Zucchini)cpecpeB147
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g11370Cucurbita pepo (Zucchini)cpecpeB371
Cp4.1LG07g11370Cucurbita maxima (Rimu)cmacpeB102
Cp4.1LG07g11370Cucurbita moschata (Rifu)cmocpeB077
Cp4.1LG07g11370Cucurbita moschata (Rifu)cmocpeB751
Cp4.1LG07g11370Wild cucumber (PI 183967)cpecpiB806
Cp4.1LG07g11370Cucumber (Chinese Long) v2cpecuB806
Cp4.1LG07g11370Bottle gourd (USVL1VR-Ls)cpelsiB680
Cp4.1LG07g11370Watermelon (Charleston Gray)cpewcgB737
Cp4.1LG07g11370Watermelon (Charleston Gray)cpewcgB744
Cp4.1LG07g11370Watermelon (97103) v1cpewmB792
Cp4.1LG07g11370Watermelon (97103) v1cpewmB819
Cp4.1LG07g11370Melon (DHL92) v3.5.1cpemeB753
Cp4.1LG07g11370Cucumber (Gy14) v2cgybcpeB146
Cp4.1LG07g11370Melon (DHL92) v3.6.1cpemedB889
Cp4.1LG07g11370Silver-seed gourdcarcpeB0189
Cp4.1LG07g11370Wax gourdcpewgoB1069