Carg17514 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17514
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Dynein light chain
Location	Cucurbita_argyrosperma_scaffold_084 : 572387 .. 573786 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGTAATGTATCGACAAACTTTTTTTTTTTCTTTTTTAGCTTCGCGAATCGTTAACGAATTTCAAATTTTTGAAAAATTAAAGAACTGGGTCTCGTAACACGAACGAATGTTATTGAAATCAAACAATTTTCAAACGGGCATAGTTTTTTTTCTTTTCGAGAATGAAAATTGTAGCAAAGAAATCAGAAAAAATCGAAATCGGAGCATTTGGAGACATAATTGAAGTGGCCAATTGGAAAAGGATCCGACAAGGCATGTGTTTAGATGAGTAAACACATAGTGATTAGCACATATTTTAAGCTAACAATTTGATATATTCATTCAAATGGAGCCCTTCCTTTTTCTTGTAATCCATGTGCATTACTTCATTGCTTAATAATTTTAAATTTTTTCAATCATATTATAAAATTTTCCCTTATTACTAAATTAATATCACTAAGATTCGTTAAGAGATGAGAACTGATCAGGGTTCTGGAAATTTTGAGATCGAGATTGAATCGTAATAAAAAAAAATGATTTTGAGGAGTTGTTTTAGTCCCTCCTGTATTGTTAGGAGGTTTCTGTCTAATATATTCGATAACTTGAAAAAGTTTCTAATAGTTTAGTTAATTTTTAGAAAAAATCATAATATGTTTGAATTTATTAGACATAAAATTAAAAGTGTACGAGTACTCAACCCGAAAGAAATTAAAAAATATATATTTTTTTTTAAATCTATATATATAAAAAAAATCTAATTGAATTGGGCCTAATGCAGGAGTTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAGATTCAGAAAGCTACTGAATGAATGAGTTCATTTAATGAACCTAATGTAAAGGCAATTTTTATTAATATTGTACAAAACCAATT

mRNA sequence

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAGTTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAGATTCAGAAAGCTACTGAATGAATGAGTTCATTTAATGAACCTAATGTAAAGGCAATTTTTATTAATATTGTACAAAACCAATT

Coding sequence (CDS)

ATGGCTACTCTAAACAAGCAAATGAAAGGAGGATTCAAGTCCTTTTACAAGTCTCGAGATGGAGCTTGTAACGTACAAGCATGTGAGTCTGTTTCAGTGGATAAAGCATCAGTTTACAAGTATAACTGGTTGGGTAGGAAGAGTAAGAAGGTCGTTCATCAACATGGCGGGTCGAGAGGAGCGAAGGGCGGTGGGGACGGTGACGGAAGCGGGGGAACGGAGGGGAGAAAGATGGTGGTTGAGGGTAGGAAGTCAGTTTCCCATGTGGAAACAAACTTGGGATCAGTGGCTTCATTTCTTCAAGTGAAGGTATTGGTATCAGACATGCCTGAAATGATGCAAATTCAGGCGTTTAGATGTGCAAGGAGGAGCTATGACAGCTTGGAGAAGCTCAGCTCAAAGCTCATGGCTTACAATCTCAAAAAGGAGTTTGACAAAGTACATGGGCCGGCCTGGCATTGTATTGTGGGCTCAAGTTTCGGGTCATTTGTGACCCATTCAACAGGTTGCTTCCTATATTTTTCAATGGAGGAATTATATATTTTATTATTTAGAACTAAGATTCAGAAAGCTACTGAATGA

Protein sequence

MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRGAKGGGDGDGSGGTEGRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKATE

Homology

[Close]

BLAST of Carg17514 vs. NCBI nr
Match: XP_022938230.1 (uncharacterized protein LOC111444374 [Cucurbita moschata])

HSP 1 Score: 357.1 bits (915), Expect = 3.8e-95
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 10  MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 69

Query: 61  AKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           AKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 70  AKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 129

Query: 121 ARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY 180
           ARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY
Sbjct: 130 ARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY 189

Query: 181 ILLFRTKIQKATE 194
           ILLFRTKIQKATE
Sbjct: 190 ILLFRTKIQKATE 202

[Close]

BLAST of Carg17514 vs. NCBI nr
Match: XP_022965961.1 (uncharacterized protein LOC111465683 [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 4.0e-84
Identity = 175/193 (90.67%), Postives = 176/193 (91.19%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           M T+NKQMKGGFKSFYKSRDGACNVQACESVSVDKA VYKYNWLGRKSKK VHQHGG RG
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESVSVDKAYVYKYNWLGRKSKKAVHQHGGPRG 60

Query: 61  AKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
           A XXXXXXXXXXXXX           SHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC
Sbjct: 61  AXXXXXXXXXXXXXXXXXXXXXXXXXSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120

Query: 121 ARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY 180
           ARRSYDSLEK SSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY
Sbjct: 121 ARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY 180

Query: 181 ILLFRTKIQKATE 194
           ILLFRTKIQKATE
Sbjct: 181 ILLFRTKIQKATE 193

[Close]

BLAST of Carg17514 vs. NCBI nr
Match: XP_023538230.1 (uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 317.4 bits (812), Expect = 3.4e-83
Identity = 178/195 (91.28%), Postives = 179/195 (91.79%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQMKGGFKSFYKSRDGA +VQACESVSVDK SVYKYNWLGRKSKKVVHQHGGSRG
Sbjct: 1   MATLNKQMKGGFKSFYKSRDGARDVQACESVSVDKVSVYKYNWLGRKSKKVVHQHGGSRG 60

Query: 61  A--KXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
           A   XXXXXXXXXXXXX           SHVETNLGSVASFLQVKVLVSDMPEMMQIQAF
Sbjct: 61  AXXXXXXXXXXXXXXXXXXXXXXXXXXXSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE
Sbjct: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180

Query: 181 LYILLFRTKIQKATE 194
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 195

[Close]

BLAST of Carg17514 vs. NCBI nr
Match: XP_008457739.1 (PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 1.6e-72
Identity = 154/197 (78.17%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRD-GACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHG 60
           MATLNKQMK GFKSFYKSRD G  NV + E V   SVDK S+YKYNWLGRKSKK   QH 
Sbjct: 1   MATLNKQMK-GFKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GSRGAKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 120
           G   A              RK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQIQ
Sbjct: 61  GGGXA----GGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQ 120

Query: 121 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 121 AFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180

Query: 181 EELYILLFRTKIQKATE 194
           E+LYILLFRTKIQKA E
Sbjct: 181 EKLYILLFRTKIQKAIE 192

[Close]

BLAST of Carg17514 vs. NCBI nr
Match: XP_022143180.1 (uncharacterized protein LOC111013113 [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 1.1e-70
Identity = 157/195 (80.51%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MATLNKQ+K GFKSFYKSRDGA +  A +   +D+  VYKYNWLGRKSKK   QHGG   
Sbjct: 1   MATLNKQIK-GFKSFYKSRDGARDTAAFDPAPLDRVPVYKYNWLGRKSKKATDQHGGXXX 60

Query: 61  AKXXXXXXXXXXXXXRK--MVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAF 120
             XXXXXXXXXXXXX +  +VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPEMMQ+QAF
Sbjct: 61  XXXXXXXXXXXXXXXXRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMMQLQAF 120

Query: 121 RCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEE 180
           R ARRSYDSLEK SSK MA+++KKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME+
Sbjct: 121 RSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEK 180

Query: 181 LYILLFRTKIQKATE 194
           LYILLFRTKIQKATE
Sbjct: 181 LYILLFRTKIQKATE 194

[Close]

BLAST of Carg17514 vs. TAIR10
Match: AT5G20110.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 159.1 bits (401), Expect = 2.8e-39
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 82  GRKSVSHVE----TNLGSVASFLQVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMA 141
           GRKSVSHVE      + + A  L V++L +DMP  MQ  AFRCAR + DSLEK SSK MA
Sbjct: 93  GRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMA 152

Query: 142 YNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELYILLFRTKIQKAT 193
           +NLKKEFDK +GPAWHCIVGSSFGSFVTHSTGCF+YFSM++LY+LLF+TK++ A+
Sbjct: 153 FNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of Carg17514 vs. TAIR10
Match: AT1G23220.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-20
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 102 VKVLVSDMPEMMQIQAFRCARRSYDSLE-KLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 161
           V+V  SDMP   Q +AF  +R   ++   K  +K +A+ LKK+FD  +GPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 162 GSFVTHSTGCFLYFSMEELYILLFRTKIQ 190
           GS+VTHSTG FLYF ++++Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]

BLAST of Carg17514 vs. TAIR10
Match: AT3G16120.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 101 QVKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSF 160
           + KV  +DMP  MQ+QA + A +S D  +   S  +A ++KKEFD+ +G  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 161 GSFVTHSTGCFLYFSMEELYILLFR 186
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Carg17514 vs. TAIR10
Match: AT4G15930.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 75.1 bits (183), Expect = 5.3e-14
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 166
           +DM + MQ +A   A     + EK S  K +A N+KKEFDK HG  WHCIVG +FGS+VT
Sbjct: 45  ADMKDDMQKEAIEIA---ISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFGSYVT 104

Query: 167 HSTGCFLYFSMEELYILLFRT 187
           H T  F+YF +++  +LLF++
Sbjct: 105 HETNHFVYFYLDQKAVLLFKS 122

[Close]

BLAST of Carg17514 vs. TAIR10
Match: AT4G27360.1 (Dynein light chain type 1 family protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.9e-14
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTH 166
           +DM + M+  A   A ++ D  +      +A  +KKEFD+ +G  W CIVG+ FGSFVTH
Sbjct: 11  TDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTH 70

Query: 167 STGCFLYFSMEELYILLFRTKI 189
            +GCF++FS+  L ILLF+  +
Sbjct: 71  CSGCFIHFSVGSLTILLFKGSV 92

[Close]

BLAST of Carg17514 vs. Swiss-Prot
Match: sp|Q86A88|DYL_DICDI (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 102 VKVLVSDMPEMMQIQAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFG 161
           + V  +DMP+ MQ  A  C  ++++  E    + +A  +KKEFDK + P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 162 SFVTHSTGCFLYFSMEELYILLFR 186
           SFVTH T  F+YF++ +  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of Carg17514 vs. Swiss-Prot
Match: sp|O02414|DYL1_HELCR (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 166
           +DMPE MQ  A  CA +   +LEK +  K +A  +KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEELYILLFRT 187
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of Carg17514 vs. Swiss-Prot
Match: sp|Q39580|DYL1_CHLRE (Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=3055 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.6e-13
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 166
           +DM E MQ  A  CA +   +LEK +  K +A  +KKEFD+ H P WHCIVG +FGS+VT
Sbjct: 13  ADMSEEMQADAVDCATQ---ALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVT 72

Query: 167 HSTGCFLYFSMEELYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 73  HETKHFIYFYLGQVAILLFKS 90

[Close]

BLAST of Carg17514 vs. Swiss-Prot
Match: sp|P61285|DYL1_BOVIN (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 166
           +DM E MQ  +  CA +   +LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEELYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Carg17514 vs. Swiss-Prot
Match: sp|P63167|DYL1_HUMAN (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEMMQIQAFRCARRSYDSLEKLS-SKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVT 166
           +DM E MQ  +  CA +   +LEK +  K +A ++KKEFDK + P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEELYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Carg17514 vs. TrEMBL
Match: tr|A0A1S3C671|A0A1S3C671_CUCME (uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.0e-72
Identity = 154/197 (78.17%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRD-GACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHG 60
           MATLNKQMK GFKSFYKSRD G  NV + E V   SVDK S+YKYNWLGRKSKK   QH 
Sbjct: 1   MATLNKQMK-GFKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHS 60

Query: 61  GSRGAKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQ 120
           G   A              RK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQIQ
Sbjct: 61  GGGXA----GGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQ 120

Query: 121 AFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180
           AFR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSM
Sbjct: 121 AFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSM 180

Query: 181 EELYILLFRTKIQKATE 194
           E+LYILLFRTKIQKA E
Sbjct: 181 EKLYILLFRTKIQKAIE 192

[Close]

BLAST of Carg17514 vs. TrEMBL
Match: tr|A0A0A0LKY0|A0A0A0LKY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 5.0e-67
Identity = 157/196 (80.10%), Postives = 164/196 (83.67%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESV---SVDKASVYKYNWLGRKSKKVVHQHGG 60
           MATLNKQMK GFKSFYKSRDG  NV + E +   SVDK S+YKYNWLGRKS         
Sbjct: 1   MATLNKQMK-GFKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKS-XXXXXXXX 60

Query: 61  SRGAKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 120
                XXXXXXXXXXXXX    VEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+MQIQA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQA 120

Query: 121 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180
           FR ARRSYDSLEK SSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSME
Sbjct: 121 FRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180

Query: 181 ELYILLFRTKIQKATE 194
           +LYILLFRTKIQKA E
Sbjct: 181 KLYILLFRTKIQKAIE 194

[Close]

BLAST of Carg17514 vs. TrEMBL
Match: tr|A0A2I4GAQ3|A0A2I4GAQ3_9ROSI (uncharacterized protein LOC109006224 OS=Juglans regia OX=51240 GN=LOC109006224 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.7e-54
Identity = 118/191 (61.78%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQACESVSVDKASVYKYNWLGRKSKKVVHQHGGSRG 60
           MA   K+ KG   S YKS  G  +    +   VDK S+ + +WL RKSK        S+G
Sbjct: 5   MAAHEKKKKGFIMSIYKSAAGNQSTPVPDPAMVDKKSIQR-SWLLRKSK-------ASKG 64

Query: 61  AKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQAFRC 120
            +             R  VVE RKSVSH+ETNL SVA+FLQVKVLV+DMPE MQ+ AF+C
Sbjct: 65  IEQGGQRVMEGGGMLRGEVVEARKSVSHIETNLASVAAFLQVKVLVTDMPEFMQVHAFKC 124

Query: 121 ARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEELY 180
           ARR+YDSLEK SSK MA+N+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFS+E+LY
Sbjct: 125 ARRTYDSLEKFSSKHMAFNMKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSLEKLY 184

Query: 181 ILLFRTKIQKA 192
           ILLF+TKIQKA
Sbjct: 185 ILLFKTKIQKA 187

[Close]

BLAST of Carg17514 vs. TrEMBL
Match: tr|A0A2P4LEP4|A0A2P4LEP4_QUESU (Dynein light chain lc6, flagellar outer arm OS=Quercus suber OX=58331 GN=CFP56_06664 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 2.9e-51
Identity = 122/198 (61.62%), Postives = 144/198 (72.73%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDG--ACNVQACESVSVDKASVYKYNWLGRKSK---KVVHQH 60
           MA+  KQ K GF S YKS  G     +    +  VDK S+ + +W  RKSK   K + Q 
Sbjct: 1   MASHEKQKK-GFMSIYKSTIGNHIKPMTPPPAGVVDKKSIQR-SWFSRKSKTCNKEIEQ- 60

Query: 61  GGSRGAKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQI 120
           GG R  +              ++VV+ RKSVSHVETNL SVA+FLQVKVLVSDMPE MQ+
Sbjct: 61  GGQRVIEGGVGGVG-------QIVVDARKSVSHVETNLASVATFLQVKVLVSDMPEFMQV 120

Query: 121 QAFRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFS 180
            AFRCARR++DSLEK SSK MA+N+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFS
Sbjct: 121 HAFRCARRTHDSLEKFSSKHMAFNMKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFS 180

Query: 181 MEELYILLFRTKIQKATE 194
           M++LYILLF+TKIQKA +
Sbjct: 181 MDKLYILLFKTKIQKALD 188

[Close]

BLAST of Carg17514 vs. TrEMBL
Match: tr|A0A2C9UM99|A0A2C9UM99_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G130800 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 6.6e-51
Identity = 116/196 (59.18%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 1   MATLNKQMKGGFKSFYKSRDGACNVQAC--ESVSVDKASVYKYNWLGRKSKKVVHQ-HGG 60
           MAT  KQ KG   SFY S     + Q    +   V   +V   N+  RKS+      HGG
Sbjct: 1   MATHEKQKKGFIMSFYMSATKISHRQKTNHQPNVVTNNAVLSRNFSSRKSRNYQETVHGG 60

Query: 61  SRGAKXXXXXXXXXXXXXRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMMQIQA 120
           +R A+                +VE RKSVSHVETN+GSVASFLQVKVLV+DMP  MQ++A
Sbjct: 61  ARVAEGG--------------MVEARKSVSHVETNIGSVASFLQVKVLVTDMPGSMQVRA 120

Query: 121 FRCARRSYDSLEKLSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSME 180
           FRCARR+YDSL+K SSK MA+N+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSM+
Sbjct: 121 FRCARRTYDSLDKFSSKHMAFNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMD 180

Query: 181 ELYILLFRTKIQKATE 194
            LYIL+F+TK+Q+A E
Sbjct: 181 NLYILVFKTKVQRALE 182

The following BLAST results are available for this feature:

BLAST of Carg17514 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022938230.1	3.8e-95	100.00	uncharacterized protein LOC111444374 [Cucurbita moschata]	[more]
XP_022965961.1	4.0e-84	90.67	uncharacterized protein LOC111465683 [Cucurbita maxima]	[more]
XP_023538230.1	3.4e-83	91.28	uncharacterized protein LOC111799067 [Cucurbita pepo subsp. pepo]	[more]
XP_008457739.1	1.6e-72	78.17	PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo]	[more]
XP_022143180.1	1.1e-70	80.51	uncharacterized protein LOC111013113 [Momordica charantia]	[more]

BLAST of Carg17514 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20110.1	2.8e-39	66.96	Dynein light chain type 1 family protein	[more]
AT1G23220.1	1.7e-20	51.69	Dynein light chain type 1 family protein	[more]
AT3G16120.1	8.2e-15	43.53	Dynein light chain type 1 family protein	[more]
AT4G15930.1	5.3e-14	48.15	Dynein light chain type 1 family protein	[more]
AT4G27360.1	6.9e-14	42.68	Dynein light chain type 1 family protein	[more]

BLAST of Carg17514 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q86A88\|DYL_DICDI	2.5e-13	45.24	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
sp\|O02414\|DYL1_HELCR	3.3e-13	49.38	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
sp\|Q39580\|DYL1_CHLRE	5.6e-13	49.38	Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii OX=30...	[more]
sp\|P61285\|DYL1_BOVIN	1.2e-12	48.15	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
sp\|P63167\|DYL1_HUMAN	1.2e-12	48.15	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]

BLAST of Carg17514 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C671\|A0A1S3C671_CUCME	1.0e-72	78.17	uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=...	[more]
tr\|A0A0A0LKY0\|A0A0A0LKY0_CUCSA	5.0e-67	80.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
tr\|A0A2I4GAQ3\|A0A2I4GAQ3_9ROSI	3.7e-54	61.78	uncharacterized protein LOC109006224 OS=Juglans regia OX=51240 GN=LOC109006224 P...	[more]
tr\|A0A2P4LEP4\|A0A2P4LEP4_QUESU	2.9e-51	61.62	Dynein light chain lc6, flagellar outer arm OS=Quercus suber OX=58331 GN=CFP56_0...	[more]
tr\|A0A2C9UM99\|A0A2C9UM99_MANES	6.6e-51	59.18	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G130800 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

Vocabulary: **Cellular Component**
Term	Definition
GO:0030286	dynein complex

Vocabulary: **INTERPRO**
Term	Definition
IPR037177	DLC_sf
IPR001372	Dynein_light_chain_typ-1/2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17514-RA	Carg17514-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 97..186 e-value: 3.0E-36 score: 136.4
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 102..186 e-value: 2.2E-29 score: 101.5
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 39..190
IPR037177	Dynein light chain superfamily	GENE3D	G3DSA:3.30.740.10		coord: 100..186 e-value: 2.1E-29 score: 103.4
IPR037177	Dynein light chain superfamily	SUPERFAMILY	SSF54648	DLC	coord: 99..186
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..76
None	No IPR available	PANTHER	PTHR11886:SF51	SUBFAMILY NOT NAMED	coord: 39..190

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17514	Cla016724	Watermelon (97103) v1	carwmB0243
Carg17514	Csa2G006120	Cucumber (Chinese Long) v2	carcuB0282
Carg17514	MELO3C004518	Melon (DHL92) v3.5.1	carmeB0258
Carg17514	ClCG11G002920	Watermelon (Charleston Gray)	carwcgB0244
Carg17514	CSPI02G01600	Wild cucumber (PI 183967)	carcpiB0286
Carg17514	Cucsa.131960	Cucumber (Gy14) v1	carcgyB0300
Carg17514	CmaCh05G013040	Cucurbita maxima (Rimu)	carcmaB0356
Carg17514	CmaCh12G012180	Cucurbita maxima (Rimu)	carcmaB0355
Carg17514	CmoCh12G012460	Cucurbita moschata (Rifu)	carcmoB0356
Carg17514	Lsi11G003040	Bottle gourd (USVL1VR-Ls)	carlsiB226
Carg17514	Cp4.1LG11g10930	Cucurbita pepo (Zucchini)	carcpeB0357
Carg17514	Cp4.1LG07g11370	Cucurbita pepo (Zucchini)	carcpeB0362
Carg17514	CsGy2G001620	Cucumber (Gy14) v2	carcgybB0269
Carg17514	MELO3C004518.2	Melon (DHL92) v3.6.1	carmedB0268
Carg17514	CsaV3_2G002750	Cucumber (Chinese Long) v3	carcucB0286
Carg17514	Cla97C11G209390	Watermelon (97103) v2	carwmbB0258
Carg17514	Bhi06G001676	Wax gourd	carwgoB0332

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17514	Carg10895	Silver-seed gourd	carcarB296

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17514	Silver-seed gourd	carcarB149
Carg17514	Cucumber (Gy14) v2	carcgybB0271
Carg17514	Cucurbita maxima (Rimu)	carcmaB0352
Carg17514	Cucurbita moschata (Rifu)	carcmoB0357
Carg17514	Cucurbita moschata (Rifu)	carcmoB0353
Carg17514	Cucurbita pepo (Zucchini)	carcpeB0359
Carg17514	Cucumber (Chinese Long) v2	carcuB0284
Carg17514	Cucumber (Chinese Long) v3	carcucB0288
Carg17514	Bottle gourd (USVL1VR-Ls)	carlsiB228
Carg17514	Melon (DHL92) v3.5.1	carmeB0254
Carg17514	Melon (DHL92) v3.6.1	carmedB0264
Carg17514	Watermelon (Charleston Gray)	carwcgB0243
Carg17514	Watermelon (Charleston Gray)	carwcgB0248
Carg17514	Watermelon (97103) v1	carwmB0240
Carg17514	Watermelon (97103) v1	carwmB0245
Carg17514	Watermelon (97103) v2	carwmbB0262
Carg17514	Wax gourd	carwgoB0335