Cp4.1LG06g10210 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g10210
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Domain of unknown function (DUF543)
Location	Cp4.1LG06 : 10602091 .. 10603380 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATGTGATAGGGGCAGGCCGAGAAAGGGGTGAGAAGTCCATTTTATAGTGATTCTAATATCAATGGCCCAAATTGAAAGGGGGCCGGGCTGAGCCTGCTGAGCCAAGGAATCGAAGCGAAGCACAACAAGGAATCGAAGGAAACCCTCATAATACGGCCATTTCCACACAGCCAGAGGAATTGCAGGAAAACTAGACAAGGAAGAAGAAGAAGAAGAAGAAGAAGAACAGTGGGAGGATAGCAATCAACCTTATCGCTTCACAGCGTCCGACGGTTCCTTTCTGGATATGGCTGAGAACAAAGAGGTCGTGCCTCCACCGCATGATTTGAATGCGAAGTGGGACGCTTGTCTTGATTTGACGCTGCGCCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGCGGCCTCCTTTTCTTCAGTAATAATAATTCCTCCTCTCCCTTTTTCTCTGTTCTTATTTCCATCTTATTATGTTTTTCTAATCTTCATCTGGCGGATGGGAAACATTGGAGTTTTAATTCATTTGAAGTAATTTTCTCTGGCCGTTCTTTACTAAAAACTGGAATTGCATGTCATTTCATTGGATCAACCATATGTTAAGATTTTTCCGTCATCGATTTGGACTGTCTGATATCTGCAAATGAAAGAGATGTAACGATTTTATTCTGCGACGAATCTGTAGACTTGAGAAATTGGGGTTCGCGTGAAATGGGTAATCACAAATGTCTTGAACTGTTGTCTTTCTACACTACTCGTGTAACCATTTCTCAGTATTGGGAACATATAGCATGGATGCTAGAGAAATATCGGAGTGTACTTTCAGTTTGTATCATTTATAAGGGTCATTGCATCCTAGAATATCAGGATTTCCTAGATTCGTGTAAAACAAACTCGTGAATTTGAAGCCACTTCATGGACATCCAAGATTTTTGCAAAATAAATGGCCTCTCGAGATGTTGATATACCGATGTTTTATCATTTTTCTGGAACTTCAGTTGTATGATTTTAACAAACTTACTAATGAGCACTGTATCTTGATTAACAACTAGGGAGTCCGGTGACTCGTTGGGCATCTATTGCTTTTGGTGCTGGATTGGGCATTGGATCAGCGTACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCGAAATTCGCATCTCCAAAAATCACAGGGCCTCAGCCTTCACAGGTGAAATTTTACATTTTCTTTCATTATAAAATTATCACCTTGAATTTTTCTGTTTAATATGATATTGTTCGATCACCTTTAGATTCTGAACTAA

mRNA sequence

TGAATGTGATAGGGGCAGGCCGAGAAAGGGGTGAGAAGTCCATTTTATAGTGATTCTAATATCAATGGCCCAAATTGAAAGGGGGCCGGGCTGAGCCTGCTGAGCCAAGGAATCGAAGCGAAGCACAACAAGGAATCGAAGGAAACCCTCATAATACGGCCATTTCCACACAGCCAGAGGAATTGCAGGAAAACTAGACAAGGAAGAAGAAGAAGAAGAAGAAGAAGAACAGTGGGAGGATAGCAATCAACCTTATCGCTTCACAGCGTCCGACGGTTCCTTTCTGGATATGGCTGAGAACAAAGAGGTCGTGCCTCCACCGCATGATTTGAATGCGAAGTGGGACGCTTGTCTTGATTTGACGCTGCGCCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGCGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCATCTATTGCTTTTGGTGCTGGATTGGGCATTGGATCAGCGTACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCGAAATTCGCATCTCCAAAAATCACAGGGCCTCAGCCTTCACAGATTCTGAACTAA

Coding sequence (CDS)

ATGGCTGAGAACAAAGAGGTCGTGCCTCCACCGCATGATTTGAATGCGAAGTGGGACGCTTGTCTTGATTTGACGCTGCGCCGATTCGTTTACTCTTCCTTGGCTGGTGCATTTGGCGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCATCTATTGCTTTTGGTGCTGGATTGGGCATTGGATCAGCGTACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCGAAATTCGCATCTCCAAAAATCACAGGGCCTCAGCCTTCACAGATTCTGAACTAA

Protein sequence

MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFASPKITGPQPSQILN

Homology

[Close]

BLAST of Cp4.1LG06g10210 vs. TrEMBL
Match: A0A0A0KUY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 8.7e-43
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQIL 95
          GIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ++
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVV 94

[Close]

BLAST of Cp4.1LG06g10210 vs. TrEMBL
Match: M5XGA8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 4.8e-33
Identity = 71/95 (74.74%), Postives = 80/95 (84.21%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MA+NKE  PP +D+NAKWDACLDLT+RRFVYSSL GAFGGLL FRSPV+RWAS+AFGAGL
Sbjct: 1  MADNKEFFPPQYDVNAKWDACLDLTVRRFVYSSLGGAFGGLLLFRSPVSRWASVAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKI---TGPQPSQ 93
          GIGSAYT+C+ LFEGS AK A+PKI     PQ  Q
Sbjct: 61 GIGSAYTECSRLFEGSPAKLAAPKIIETPAPQDGQ 95

[Close]

BLAST of Cp4.1LG06g10210 vs. TrEMBL
Match: V4TE08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002721mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-33
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 4   NKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIG 63
           +K++VPP +DLNAKWDAC+DLT+RRFVYSSL GAF GLLFFRSPVTRWAS+AFGAGLGIG
Sbjct: 71  SKQIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIG 130

Query: 64  SAYTDCNSLFEGSTAKFASPKITGPQPS 92
           SAYTDC+  F+GS +K ASPKI+   P+
Sbjct: 131 SAYTDCSHFFDGSPSKLASPKISSDTPA 158

[Close]

BLAST of Cp4.1LG06g10210 vs. TrEMBL
Match: A0A0D2U126_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-33
Identity = 69/93 (74.19%), Postives = 79/93 (84.95%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          M ENKE+ P  +D+NAKWDAC+DLTLRRFVYSSLAGAFGGLLFFRSPVTRWAS+AFGAG+
Sbjct: 1  MGENKELTPSKYDMNAKWDACIDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASVAFGAGI 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKI-TGPQPSQ 93
          GIGSAYTDC+SLF G + K A PK+   P P +
Sbjct: 61 GIGSAYTDCSSLFGGYSPKLAPPKLDDAPAPKE 93

[Close]

BLAST of Cp4.1LG06g10210 vs. TrEMBL
Match: A0A067GWJ1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041737mg PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 8.2e-33
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 4   NKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIG 63
           +K++VPP +DLNAKWDAC+DLT+RRFVYSSL GAF GLLFFRSPVTRWAS+AFGAGLGIG
Sbjct: 63  SKQIVPPKYDLNAKWDACIDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASVAFGAGLGIG 122

Query: 64  SAYTDCNSLFEGSTAKFASPKITGPQPS 92
           SAYTDC+  F+GS +K ASPKI+   P+
Sbjct: 123 SAYTDCSHFFDGSPSKLASPKISSDTPA 150

[Close]

BLAST of Cp4.1LG06g10210 vs. TAIR10
Match: AT1G72170.1 (AT1G72170.1 Domain of unknown function (DUF543))

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-31
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAE K+ VPP +D+NAKWDACLDLT+RRFVYSSL GAF GLLFFRSPVTRWASIA GAG+
Sbjct: 1  MAEKKDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGI 60

Query: 61 GIGSAYTDCNSLFE---GSTAKFASPK 85
          GIGSAY+DC+  F+    S+A  A+PK
Sbjct: 61 GIGSAYSDCSRAFDSPSSSSANLAAPK 87

[Close]

BLAST of Cp4.1LG06g10210 vs. TAIR10
Match: AT1G22520.2 (AT1G22520.2 Domain of unknown function (DUF543))

HSP 1 Score: 123.2 bits (308), Expect = 8.3e-29
Identity = 60/85 (70.59%), Postives = 69/85 (81.18%), Query Frame = 1


Query: 13 DLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSL 72
          D+NAKWDACLDLT RRFVYSSL GAF GLLFFRSPVTRWASIAFGAG+GIGSAYTDC+ +
Sbjct: 12 DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 73 FEGSTAK----FASPKITGPQPSQI 94
          F+ S++      A+PK T    SQ+
Sbjct: 72 FDASSSTSATLLAAPKSTETSVSQV 96

[Close]

BLAST of Cp4.1LG06g10210 vs. NCBI nr
Match: gi|700197547|gb|KGN52724.1| (hypothetical protein Csa_5G652290 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQIL 95
          GIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ++
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVV 94

[Close]

BLAST of Cp4.1LG06g10210 vs. NCBI nr
Match: gi|659119496|ref|XP_008459688.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQI 94
          GIGSAYTDCNSLF+GSTAKF SPKIT  QPSQ+
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cp4.1LG06g10210 vs. NCBI nr
Match: gi|778708139|ref|XP_011656128.1| (PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 2.1e-42
Identity = 86/93 (92.47%), Postives = 88/93 (94.62%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQI 94
          GIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ+
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cp4.1LG06g10210 vs. NCBI nr
Match: gi|659119494|ref|XP_008459687.1| (PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDLNAKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLNAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQ 93
          GIGSAYTDCNSLF+GSTAKF SPKIT  QPSQ
Sbjct: 61 GIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQ 92

[Close]

BLAST of Cp4.1LG06g10210 vs. NCBI nr
Match: gi|449447629|ref|XP_004141570.1| (PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.7e-42
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MAENKEVVPPPHDLNAKWDACLDLTLRRFVYSSLAGAFGGLLFFRSPVTRWASIAFGAGL 60
          MAENK VVPPPHDL+AKWDACLDLTLRRFVYSS AGAFGGLLFFRSPVTRWASIAFGAGL
Sbjct: 1  MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGL 60

Query: 61 GIGSAYTDCNSLFEGSTAKFASPKITGPQPSQ 93
          GIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ
Sbjct: 61 GIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ 92

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g10210 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g10210 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUY2_CUCSA	8.7e-43	91.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652290 PE=4 SV=1	[more]
M5XGA8_PRUPE	4.8e-33	74.74	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013917mg PE=4 SV=1	[more]
V4TE08_9ROSI	8.2e-33	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002721mg PE=4 SV=1	[more]
A0A0D2U126_GOSRA	8.2e-33	74.19	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G137900 PE=4 SV=1	[more]
A0A067GWJ1_CITSI	8.2e-33	75.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g041737mg PE=4 S...	[more]

BLAST of Cp4.1LG06g10210 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72170.1	1.4e-31	72.41	Domain of unknown function (DUF543)	[more]
AT1G22520.2	8.3e-29	70.59	Domain of unknown function (DUF543)	[more]

BLAST of Cp4.1LG06g10210 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197547\|gb\|KGN52724.1\|	1.2e-42	91.49	hypothetical protein Csa_5G652290 [Cucumis sativus]	[more]
gi\|659119496\|ref\|XP_008459688.1\|	1.2e-42	92.47	PREDICTED: uncharacterized protein LOC103498730 isoform X2 [Cucumis melo]	[more]
gi\|778708139\|ref\|XP_011656128.1\|	2.1e-42	92.47	PREDICTED: MICOS complex subunit Mic10 isoform X2 [Cucumis sativus]	[more]
gi\|659119494\|ref\|XP_008459687.1\|	2.8e-42	93.48	PREDICTED: uncharacterized protein LOC103498730 isoform X1 [Cucumis melo]	[more]
gi\|449447629\|ref\|XP_004141570.1\|	4.7e-42	93.48	PREDICTED: MICOS complex subunit Mic10 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007512	Mic10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0061617	MICOS complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g10210.1	Cp4.1LG06g10210.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007512	Protein of unknown function DUF543	PANTHER	PTHR21304	UNCHARACTERIZED	coord: 1..93 score: 8.1
IPR007512	Protein of unknown function DUF543	PFAM	PF04418	DUF543	coord: 3..73 score: 1.0
None	No IPR available	PANTHER	PTHR21304:SF0	MITOCHONDRIAL INNER MEMBRANE ORGANIZING SYSTEM PROTEIN F54A3.5	coord: 1..93 score: 8.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g10210	CmaCh09G012170	Cucurbita maxima (Rimu)	cmacpeB062
Cp4.1LG06g10210	CmoCh09G013350	Cucurbita moschata (Rifu)	cmocpeB035
Cp4.1LG06g10210	Bhi06G000233	Wax gourd	cpewgoB0974
Cp4.1LG06g10210	CsGy5G030790	Cucumber (Gy14) v2	cgybcpeB696

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g10210	Melon (DHL92) v3.5.1	cpemeB708
Cp4.1LG06g10210	Melon (DHL92) v3.6.1	cpemedB842
Cp4.1LG06g10210	Cucumber (Chinese Long) v3	cpecucB0980
Cp4.1LG06g10210	Cucumber (Gy14) v1	cgycpeB0084
Cp4.1LG06g10210	Wild cucumber (PI 183967)	cpecpiB792
Cp4.1LG06g10210	Cucumber (Chinese Long) v2	cpecuB792
Cp4.1LG06g10210	Bottle gourd (USVL1VR-Ls)	cpelsiB650
Cp4.1LG06g10210	Watermelon (Charleston Gray)	cpewcgB712
Cp4.1LG06g10210	Watermelon (97103) v1	cpewmB762