Cp4.1LG06g10170 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g10170
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionMitochondrial import inner membrane translocase subunit tim16
LocationCp4.1LG06 : 10611492 .. 10614549 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCATAACTTTCCCCGCAAGCAGAGGGCGCCCTTCCCTTTCTTCTCCCTTTCTCTTTGCCGTCTCCAATTTCTCTTTGCCGCCGCCGCCGCCCCTCCCTCTCTTCACTCCCTATTGTTCAACGATTTGCCGCATCCGCGCCACCCTATCCATATCAACCTCCTCCCCTCACACCCGGACGCTAGTAGGGTGAACGTTGGGTCGGTTTCCAGTTTTGGCAGCCTCCATATCACAAGGCAAGTCTGTATGATATTTTTGTTTCTAATCCAAATATTTTATTTGAGCCTTCAAACCCTAAATAAAACCATCCGCCACTTTCTAATTGATTTTGCAGTTCTAGCGGCGTTAACGATTTCGGACCCGTTATCGAGGCCAGCCAATTAATCATGGTATCTCTCTACTTTCTTTCACTTCTCCTCTCATTTGATGGTGGATCGATTTCTAAGATAATGAGAAAATGATATTGAATCAGGAGCGGATGTATAAACATAATTTATTTTGTTAGTTTTATCTGAAATATTATGTATCCGTCTCCTCCGTTTAGTAATTTGTTTCCAGATTGATTATGGATTATGGGTTTAATTCGAAGTTTCATTTCGTTCCCAAATTTTCTCTGGCCGAAGTTTCGTCTAGGGGAATATTATGTATCCGTCTCCTTCATATTTATTCTGAACATATTGGGTTCTTGATGCTTGTTTCTTGCCCTCTGCGCTTTTTAAAGCCATTTGAAATCAAGCATATTCGAAGTGTGTTTGTATATCTTGTGTCATGTCATCTCTCTCTTGAGTGTACATTGATCTTTTTACCAATCAAATCAGTGCTATTCTAATTAGAACTCATGTATTTACTCCTGCTTTGTCGATAACTTCAATTTTGACAGAGGAGAGGAGTAGATATTGTATTGCATAATTTTAAAATCGTCTTATTCAGTTTGACAACTTCCTATAAGAGAGCCTCTTTGCTTGTATGTATTTGGACAGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAGTAAGTACACTCTTTTTATTCCACCCCTGGGTTTTTATCTCTATTGGAAGTTGGCCAATTTGTCCTCAATATTATGGTTATTGGTGTAAATTTTTTTGGATGGCTTGATTGAAACTTTACATGTAGAACAAAAGAAACTTGCACCTTGTCTTTGAACTATTAGAAGCTTTAATGTAAATGGGGTAAGTTTTGGGACAAGCATTTTGTCAATGAGAACAAAGCTCTGAGTGCACATAGGTTAATTTTGCTTCAGGTGATATTGGCATAGACATCATTTTTTTTTAAATGTGCTTGGGGGATGTTAACATCCTGAAGTTCTATCTTTTATTACATCCTTCATCGTCTTTGAAAGCGAGAATAATGCCTTCTTAGATTTTCTATAATTGGTCAAGAGAATTTGTTATTTTTTAGCCTGTGATATGTTCAAGGGTTGAGTGTTAAAGGCTTGGATTATAGCATCCTATAGTTCCATTGTAATAGCCCAAACCCACAGATATTGTCTTCTTTATAGGCTTTTCCTTTCGATCTTCCCCCAAGGTTTTTAAAACTTTAAAACACCTCTGCTGAAGAGGTTTCTACACCTTTATAAAGAACGTTTTAATCTCCTTCCTAACCAATGTGGGATCTTACAATCCACCCTCTTTTGGGGTCTAGCGAACACTGACACTCTTTCCTTTCTCCAATCGATGTGGTACCCCTCCAATCCACCCCCTCCGGGGCCCAGTGTCCTTGTTGGCACACTGCCTCATGTCTACCCCCATTAGGGCTCAGCCTCCTCGCTGGCACATCGCCCGATGTTTGGCTCTGATACCATTTGTAAGTGCCCAAGTATTGTCCTCTTTGGGCTTTCTCTTTCGGGCTTCTCCTCAAGGTTTTTAAAACGTGTATGCTAGGGAGAGGTTTTCACACCCTTACAAAGAATGTTTCGTTCTCCTCTCTAACCAACATGGGATCTTACATCCATCCTTTACCTTTATGGTCAAGCTTGAAAGACTAAATATTATCTTCCTCGATCTTTTGAAAAAATGTTTTTATTTCTCGAGCATGTGGTGTGAGAAGTGATTTACGGACCACAATTTGGTTAGAGATGTTTGGGTGTAGTTGTGTTGTAATCTATTGAACATGTACTTGGATAAATGTAGTTGTTTATACAAAGTTTGTACTTTTTAATGAGGGAGAGTTTGATATTGTAGTTGAAGATGATTATGCTGAATAACAAATCTTTTTTCGTGCGGTGTAGATGCTTCAAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCTCCCCGGAAACGCCTTGGGAGGAAATTGTGAAGGTCAATATCTATTGCTTTTCACTAAAATAAGTTCCTTACCTTGTATATATTATTATGAATAGGTCTTTGACAGTGCTTGTTATGTTTTCAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTGAGGATGCCCCTAGCTGAGGAATGTGTTGTGTTTTGCCCATTTAGTGTTCTTGTATAATTCTTAATTTTGTGATGGCCGGCAGCATGGCATGATTGGTGAAATTGATGTATAATCGTTTCTTCCTCTTGTGGGAAAAAGTGACGTTTAAAATAGTATTTTAGATGAGGATGCCTTGAGAGCACCTAAATTTAATTTGTTTACTTCTAATAATTTGTAAACAATTATTTGTTACGCACACGCCTGAAGTAGACCACGGTCATTGTTCGATGAAATATTGCTAATACGAGGCTCGAGTTAGAACCCTAGACTTAGAACGATTAATTCAAAAGCCTTCCTCTCATATTATTGATTTAGGATTTTAGTTCAATCTTGGAGCTTATCATGTCATTTTCTTTTTCTAATTAATTCTCACTAAAAA

mRNA sequence

TCATAACTTTCCCCGCAAGCAGAGGGCGCCCTTCCCTTTCTTCTCCCTTTCTCTTTGCCGTCTCCAATTTCTCTTTGCCGCCGCCGCCGCCCCTCCCTCTCTTCACTCCCTATTGTTCAACGATTTGCCGCATCCGCGCCACCCTATCCATATCAACCTCCTCCCCTCACACCCGGACGCTAGTAGGGTGAACGTTGGGTCGGTTTCCAGTTTTGGCAGCCTCCATATCACAAGTTCTAGCGGCGTTAACGATTTCGGACCCGTTATCGAGGCCAGCCAATTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAATGCTTCAAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCTCCCCGGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTGAGGATGCCCCTAGCTGAGGAATGTGTTGTGTTTTGCCCATTTAGTGTTCTTGTATAATTCTTAATTTTGTGATGGCCGGCAGCATGGCATGATTGGTGAAATTGATGTATAATCGTTTCTTCCTCTTGTGGGAAAAAGTGACGTTTAAAATAGTATTTTAGATGAGGATGCCTTGAGAGCACCTAAATTTAATTTGTTTACTTCTAATAATTTGTAAACAATTATTTGTTACGCACACGCCTGAAGTAGACCACGGTCATTGTTCGATGAAATATTGCTAATACGAGGCTCGAGTTAGAACCCTAGACTTAGAACGATTAATTCAAAAGCCTTCCTCTCATATTATTGATTTAGGATTTTAGTTCAATCTTGGAGCTTATCATGTCATTTTCTTTTTCTAATTAATTCTCACTAAAAA

Coding sequence (CDS)

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAATGCTTCAAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCTCCCCGGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTGAGGATGCCCCTAGCTGA

Protein sequence

MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS
Homology
[Close]
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-12
Identity = 52/106 (49.06%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 63  ILGVSPETPWEEIVKKYDALFEKN--AQTGSFYLQSKVHRAKERLE 105
           IL +S  TP EEI K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

[Close]
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.0e-11
Identity = 48/120 (40.00%), Postives = 73/120 (60.83%), Query Frame = 1 

Query: 4   KILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNT---VRRASKVMTEQEARQ 63
           + +   I++GS ++++AFVQAY+Q + NA++    Q     +   VRR    MT QEA  
Sbjct: 5   RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAGS 64

Query: 64  ILGVSPETPWE-EIVKKYDALFEKN--AQTGSFYLQSKVHRAKERLET-LYQSKGEDAPS 117
           IL + PE+  E E+ K++  +FE N   + GSFYLQSKV RA E+L++ L Q   E +P+
Sbjct: 65  ILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQEQSPA 122

[Close]
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match: TIM16_MOUSE (Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-10
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 3   AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVSPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERLE 105
           IL VS  +P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLD 106

[Close]
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match: TIM16_HUMAN (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = 1 

Query: 3   AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVSPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERLE 105
           IL VS  +P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLD 106

[Close]
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match: TIM16_XENTR (Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10
Identity = 53/116 (45.69%), Postives = 70/116 (60.34%), Query Frame = 1 

Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA ++VMG  ++ RAF +A RQ  A + A+     +   ++    +   ++ QEA+Q
Sbjct: 2   AKYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQEAQQ 61

Query: 63  ILGVSPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERL--ETLYQSKGE 113
           IL VS  TP EEI K Y+ LF+ N +   GSFYLQSKV RAKERL  E   QSK E
Sbjct: 62  ILNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLDQEMDIQSKTE 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match: A0A0A0LW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.3e-50
Identity = 107/116 (92.24%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ETPWEE+ KKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ+KG+DAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQETIQNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ET WEEIVKKYD LFE+NA+ GSFYLQSKVHRAKE LE +++ KGE  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.1e-42
Identity = 95/116 (81.90%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQETI+NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ E PWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETL+ SKG+D PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match: C6T494_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-42
Identity = 96/116 (82.76%), Postives = 103/116 (88.79%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GILARA VQAYRQALTNASK+GVAQETIQNT+RRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ETPWEEI+KKYD LFE NA+ GSFYLQSKVHRAKE LE + Q K +  PS
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match: A0A059AV82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-42
Identity = 93/116 (80.17%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GI+ARA VQAYRQAL NASK+GVAQET+QNTVRRASK MTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGIMARALVQAYRQALANASKTGVAQETLQNTVRRASKAMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ET WE+I+KKYDALFE+NA+ GSFY+QSKVHRAKE LE++YQ KG+  PS
Sbjct: 61  ILGVTEETAWEDILKKYDALFERNAKNGSFYIQSKVHRAKECLESVYQGKGQSNPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TAIR10
Match: AT3G59280.1 (AT3G59280.1 Protein Transporter, Pam16)

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-39
Identity = 83/116 (71.55%), Postives = 97/116 (83.62%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ +T WEEI++KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+S+G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. TAIR10
Match: AT5G61880.1 (AT5G61880.1 Protein Transporter, Pam16)

HSP 1 Score: 134.4 bits (337), Expect = 4.4e-32
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGV+ ++ W+EI+KKYD LFE+NAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]
BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 5.8e-50
Identity = 108/116 (93.10%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ETPWEE+VKKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ KG+DAPS
Sbjct: 61  ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQIKGQDAPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 7.6e-50
Identity = 107/116 (92.24%), Postives = 113/116 (97.41%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ETPWEE+ KKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ+KG+DAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match: gi|802559894|ref|XP_012066242.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas])

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQETIQNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ET WEEIVKKYD LFE+NA+ GSFYLQSKVHRAKE LE +++ KGE  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]
BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAK+LA+LIV GS I+ RA  QAY+QAL NASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKVLAHLIVSGSVIIGRAIAQAYQQALRNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ E PWEEIVKKYD+LFE+NAQTGSFYLQSKVHRAKERLETLY SK +D PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDSLFERNAQTGSFYLQSKVHRAKERLETLYHSKDQDVPS 116

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BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match: gi|1000942229|ref|XP_015582358.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Ricinus communis])

HSP 1 Score: 181.4 bits (459), Expect = 8.9e-43
Identity = 96/116 (82.76%), Postives = 105/116 (90.52%), Query Frame = 1 

Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL+NASKSGVAQETI+NT+RR SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALSNASKSGVAQETIENTIRRGSKVMTEQEARQ 60

Query: 61  ILGVSPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGEDAPS 117
           ILGV+ ET WEEI+ KY+ LFE+NA+ GSFYLQSKVHRAKE LE L+Q KGE  PS
Sbjct: 61  ILGVTKETAWEEILNKYETLFERNAKNGSFYLQSKVHRAKECLEALHQGKGEGNPS 116

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g10170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TIM16_DANRE2.8e-1249.06Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=... [more]
TIM16_SCHPO9.0e-1140.00Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharom... [more]
TIM16_MOUSE2.0e-1045.28Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN... [more]
TIM16_HUMAN2.6e-1045.28Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN... [more]
TIM16_XENTR3.4e-1045.69Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropica... [more]
BLAST of Cp4.1LG06g10170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW69_CUCSA5.3e-5092.24Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1[more]
A0A067LED2_JATCU1.3e-4383.62Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1[more]
A0A0A0LSD2_CUCSA1.1e-4281.90Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1[more]
C6T494_SOYBN1.4e-4282.76Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A059AV82_EUCGR2.4e-4280.17Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00433 PE=4 SV=1[more]
BLAST of Cp4.1LG06g10170 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59280.11.7e-3971.55 Protein Transporter, Pam16[more]
AT5G61880.14.4e-3268.52 Protein Transporter, Pam16[more]
BLAST of Cp4.1LG06g10170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127284|ref|XP_008463624.1|5.8e-5093.10PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi... [more]
gi|449443552|ref|XP_004139541.1|7.6e-5092.24PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi... [more]
gi|802559894|ref|XP_012066242.1|1.8e-4383.62PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatrop... [more]
gi|659106003|ref|XP_008453226.1|2.4e-4383.62PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is... [more]
gi|1000942229|ref|XP_015582358.1|8.9e-4382.76PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Ricinu... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030150protein import into mitochondrial matrix
Vocabulary: Cellular Component
TermDefinition
GO:0005744mitochondrial inner membrane presequence translocase complex
Vocabulary: INTERPRO
TermDefinition
IPR005341Tim16
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030150 protein import into mitochondrial matrix
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g10170.1Cp4.1LG06g10170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005341Mitochondrial import inner membrane translocase subunit Tim16PANTHERPTHR12388MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULEcoord: 1..108
score: 3.2
NoneNo IPR availablePANTHERPTHR12388:SF2SUBFAMILY NOT NAMEDcoord: 1..108
score: 3.2
NoneNo IPR availablePFAMPF03656Pam16coord: 1..108
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g10170CmaCh09G012150Cucurbita maxima (Rimu)cmacpeB062
Cp4.1LG06g10170CmoCh09G013370Cucurbita moschata (Rifu)cmocpeB035
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g10170Melon (DHL92) v3.6.1cpemedB842
Cp4.1LG06g10170Cucumber (Chinese Long) v3cpecucB0980
Cp4.1LG06g10170Wax gourdcpewgoB0974
Cp4.1LG06g10170Cucumber (Gy14) v1cgycpeB0084
Cp4.1LG06g10170Wild cucumber (PI 183967)cpecpiB792
Cp4.1LG06g10170Cucumber (Chinese Long) v2cpecuB792
Cp4.1LG06g10170Bottle gourd (USVL1VR-Ls)cpelsiB650
Cp4.1LG06g10170Watermelon (Charleston Gray)cpewcgB712
Cp4.1LG06g10170Watermelon (97103) v1cpewmB762
Cp4.1LG06g10170Melon (DHL92) v3.5.1cpemeB708
Cp4.1LG06g10170Cucumber (Gy14) v2cgybcpeB696