CmoCh09G013370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh09G013370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial import inner membrane translocase subunit tim16
Location	Cmo_Chr09 : 12117268 .. 12120264 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCAGAGGGCGCCCTTCCCTTTCTTCTTCCTTTCTCTTTGCCGTCTCCAATTTCTCTTTGCCGCCGCCGCCCCTCCCTCTCTTCACTCTCTATTGTTCAACGATTTGCCGCATCGGCGCCACCCTATCCTTATCAACCTCCTCCCCTCACACCCGGACGCTAGTAGGGTGAACGTTGGGTCGGTTTCCAGTTTTGGCAACCTCCATATCACAAGGCAAGTCTGTATGATATTTTTGTTTCTAATCCAAATATTTTATTTGAGCTTTCAAGCCCTAAATAAAACCATCCGCCACTTTCTAATTGATTTTGCAGTTCTAGCGGCGTTAACGATTTCGGACCCGTTATCGAGGCCAGCCAATTAATCATGGTATCTCTCTACTTTCTTTCTCTTCTCCTCTCATTTGATGGTGGATCGATTTCTAAGATAATGAGAAAATGATATTGAATCAGGAGCGGTTGTATAAACATAATTTATTTTGTTAGTTTTATCTGAAATATTATGTATCCGTCTCCTCCGTTTGGTAATTTGTTTCCAGAATGATTATGGATTATGGGTTTAATTCAAACTTTCATTTCGTTCCCAAATTTTCTCTGGCTGAAGTTTCGTCTAGGGGAATATTGTGTATCCGTCTCCTTCATATTTATTCTGAACATATTGGGTTCTTGATGCTTGTTTCTTGCCCTCTGCGCCTTTTAAAGCCATTTGAAATCAAGCATATTCGAAGTGTGTTTGTATATCTTGTGTCATATTATCTCTCTCTTGAGTGTACATTGATCTTTTTACCAATCAAATCAGTGCTATTCTAATTAGAACTCATGTATTTACTCCTGCTTTGTCGATAACTTCAATTTTGACAGAGGAGAGGAGTAGATATTGTATTGCATAATTTTAAGATCGTCTTATTCAGTTTGAAAACTTCCCATAAGAGAGCCTCTTTGCTTGTATGTATTTGGACAGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAGTAAGTACACTCTTTTTATTCCACCCTTGGGTTTTTATCTCTATTGGAAGTTGGCCAATTTTTCCTCAATATTATGGTTATTGGTGTAAATTTTTTTGGATGGCTTGATTGAAACTTGACATGTAGAACAAAAGAAACTTGCGCCTTGTCTTTGAACTATTAGAAGCTTTAATGTAAATGGGGTAAGTTTGGGGACAAGCATTTTGCCAATGAGAACAAAGCTCTGTGTGCACATAGGTTAATTTTGCTTCAGGTGATATTGGAATAGACATCATTTTTTTTTTAAATGTGCTTGGGGGATGTTAACATCCTGAAGTTCTATCTTTTACATCCTTCGTCGTCTTTGAAAGCGAGAATAATGCCTTCTTAGATTTTCTATAATTGGTCAAGAGAATTTGTTATTTTTTAGCCTGTGATATGTTCAAGGGTTGAGTGTTAATGGCTTGGATTATAGCATCCTATAGTTCCATTGTAACAGCCCAAGCTCACAGATATTGTCTTCTTTGTAGGCTTTTCCTTTCGATCTTCCCCTCAAGGTTTTTAAAACTTTAAAACACCTCTGTTGAAGAGGTTTCTACACCCTTATAAAGAATGTTTTGATCTCCTTCCTAACCAATGTGGGATCTTACAATCCACCCTCTTTTGGGGTCTAGCGAACGCTGGGGCTCTTTCCCTTTTCCAATCGATGTGGGACCCCTCCAATCCATCCCCTTCGGGGCCCAGTGTTCTTGCTGGCACACTGCCTCATGTCTACCCCATTCAGGGCTCAGCCTCATTGCTGGCACATCACCTAGTGTCTGGCTCTCGTACCATTTGTAAGGGCCCAAGCCCATTGCTAGCATATATTGTCCTCTTTGGGCTTTTCCTTTTGGGCTTCTCCTCAAGGTTTTTAAAACGTGTGCGCTAGGGAGAGGTTTTCACACCCTTACAAAGAATGTTTCGTTCTCCTCTCTAACCAACATGGGATCTTACATCCATCCTTTACCTTTATGGGATCTTACATCCATCCTTTACCTTTATGGTCAAGCTTGAAAGACTAAATATTATCTTCCTCGATCTTTTGAAAAAATGTTATTATTTCTCGAGCATGTGGTGTGAGAAGTGATTTACGGACCACAATTTGGTTAGAGATGTTTCGGTGTAGTGTTGTAATCTATTGAACACGTACTTGGATAAATGTAGTTGTTTATACAAAGTTTGTACTTTTTAATGAGGGAGAGTTTGATATTGTAGTTGAAGATGATTATGCTGAATAACAAATCTTTTTTCGTGTGGTGTAGATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCCCAGAAACGCCTTGGGAGGAAATTGTGAAGGTCAAATATCTATTGCTTTTCACTAAAATAAGTTCCTTAGCTTGTATATATTATTACGAATAGGTGTTTGACAATCCTTGTTATCTTTTCAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGAGGAATGTGTTGTGTTTTGCCCATTTAGTGTTCTTGTATAATTCTTAATTTTGTGATGGCCGGCAGCATGGCATGATTGATGATGAAATTGATGTATAATCTTTTCTTCCTCTTGTGGGAAAAAGTGACGTTTAAAATAGTATTTTAGATGAGGATGCCTTGAGAGCACCTAAATTTAATTTGTTTACTTCTAATAATTTGTAAACAATTATTTGTTACGCACAGGCCTGAAGTAGACCACGATCATTGTCCGATGAAATATTGCTAATACGAGGCTCGAGTTAGAACCCTAGACTTAGAACGATTAATTCAAAAGCC

mRNA sequence

CAAGCAGAGGGCGCCCTTCCCTTTCTTCTTCCTTTCTCTTTGCCGTCTCCAATTTCTCTTTGCCGCCGCCGCCCCTCCCTCTCTTCACTCTCTATTGTTCAACGATTTGCCGCATCGGCGCCACCCTATCCTTATCAACCTCCTCCCCTCACACCCGGACGCTAGTAGGGTGAACGTTGGGTCGGTTTCCAGTTTTGGCAACCTCCATATCACAAGGCAATTCTAGCGGCGTTAACGATTTCGGACCCGTTATCGAGGCCAGCCAATTAATCATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCCCAGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGAGGAATGTGTTGTGTTTTGCCCATTTAGTGTTCTTGTATAATTCTTAATTTTGTGATGGCCGGCAGCATGGCATGATTGATGATGAAATTGATGTATAATCTTTTCTTCCTCTTGTGGGAAAAAGTGACGTTTAAAATAGTATTTTAGATGAGGATGCCTTGAGAGCACCTAAATTTAATTTGTTTACTTCTAATAATTTGTAAACAATTATTTGTTACGCACAGGCCTGAAGTAGACCACGATCATTGTCCGATGAAATATTGCTAATACGAGGCTCGAGTTAGAACCCTAGACTTAGAACGATTAATTCAAAAGCC

Coding sequence (CDS)

ATGGCTGCAAAAATTCTTGCCAATTTAATTGTGATGGGCTCTGGGATACTTGCTAGGGCCTTTGTTCAAGCCTACCGTCAAGCCCTTACGAATGCTTCGAAGTCCGGTGTTGCTCAAGAAACAATTCAAAACACCGTTCGCAGAGCAAGCAAAGTGATGACAGAGCAAGAAGCCAGGCAGATTCTTGGCGTCACCCCAGAAACGCCTTGGGAGGAAATTGTGAAGAAATATGACGCTTTGTTCGAAAAGAATGCTCAGACTGGAAGCTTTTATCTTCAGTCAAAAGTTCACAGAGCCAAGGAACGATTAGAAACTCTGTATCAGAGCAAAGGTCAGGATGCCCCTAGCTGA

Homology

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BLAST of CmoCh09G013370 vs. Swiss-Prot
Match: TIM16_DANRE (Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=pam16 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-12
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA +IVMG+ ++ RAF +A RQ  A + A+     Q   Q+    +   MT QEA+Q
Sbjct: 2   AKYLAQIIVMGAQVVGRAFARALRQEFAASQAAAEARGQAGRQSAAASSFTGMTLQEAQQ 61

Query: 63  ILGVTPETPWEEIVKKYDALFEKN--AQTGSFYLQSKVHRAKERLE 105
           IL ++  TP EEI K Y+ LF+ N  A  GSFY+QSKV RAKERL+
Sbjct: 62  ILNISTLTP-EEIQKNYEHLFKVNDKAVGGSFYIQSKVVRAKERLD 106

[Close]

BLAST of CmoCh09G013370 vs. Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pam16 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 46/116 (39.66%), Postives = 70/116 (60.34%), Query Frame = 1


Query: 4   KILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNT---VRRASKVMTEQEARQ 63
           + +   I++GS ++++AFVQAY+Q + NA++    Q     +   VRR    MT QEA  
Sbjct: 5   RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGE--MTIQEAGS 64

Query: 64  ILGVTPETPWE-EIVKKYDALFEKN--AQTGSFYLQSKVHRAKERLETLYQSKGQD 114
           IL + PE+  E E+ K++  +FE N   + GSFYLQSKV RA E+L++    K Q+
Sbjct: 65  ILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQE 118

[Close]

BLAST of CmoCh09G013370 vs. Swiss-Prot
Match: TIM16_MOUSE (Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN=Pam16 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-10
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASQAAADARGRAGHQSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERLETLYQSKGQD 114
           IL V+  +P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQE 115

[Close]

BLAST of CmoCh09G013370 vs. Swiss-Prot
Match: TIM16_HUMAN (Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN=PAM16 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10
Identity = 48/115 (41.74%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKV--MTEQEARQ 62
           AK LA +IVMG  ++ RAF +A RQ    +  +  A+    +    AS +  ++ QEA+Q
Sbjct: 2   AKYLAQIIVMGVQVVGRAFARALRQEFAASRAAADARGRAGHRSAAASNLSGLSLQEAQQ 61

Query: 63  ILGVTPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERLETLYQSKGQD 114
           IL V+  +P EE+ K Y+ LF+ N ++  GSFYLQSKV RAKERL+   + + Q+
Sbjct: 62  ILNVSKLSP-EEVQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELKIQAQE 115

[Close]

BLAST of CmoCh09G013370 vs. Swiss-Prot
Match: TIM16_XENTR (Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropicalis GN=pam16 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-10
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 3   AKILANLIVMGSGILARAFVQAYRQ--ALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 62
           AK LA ++VMG  ++ RAF +A RQ  A + A+     +   ++    +   ++ QEA+Q
Sbjct: 2   AKYLAQIMVMGMQVVGRAFTRALRQEFAASRAAAEARGRAGTESAAVSSLSGISLQEAQQ 61

Query: 63  ILGVTPETPWEEIVKKYDALFEKNAQT--GSFYLQSKVHRAKERLE 105
           IL V+  TP EEI K Y+ LF+ N +   GSFYLQSKV RAKERL+
Sbjct: 62  ILNVSKLTP-EEIQKNYEHLFKVNDKEVGGSFYLQSKVVRAKERLD 106

[Close]

BLAST of CmoCh09G013370 vs. TrEMBL
Match: A0A0A0LW69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.1e-51
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEE+ KKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ+KGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of CmoCh09G013370 vs. TrEMBL
Match: A0A067LED2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 9.6e-44
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQETIQNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ET WEEIVKKYD LFE+NA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of CmoCh09G013370 vs. TrEMBL
Match: A0A0A0LSD2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQETI+NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT E PWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETL+ SKGQD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 116

[Close]

BLAST of CmoCh09G013370 vs. TrEMBL
Match: C6T494_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.1e-43
Identity = 98/116 (84.48%), Postives = 103/116 (88.79%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GILARA VQAYRQALTNASK+GVAQETIQNT+RRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTMRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEEI+KKYD LFE NA+ GSFYLQSKVHRAKE LE + Q K Q  PS
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS 116

[Close]

BLAST of CmoCh09G013370 vs. TrEMBL
Match: I1MP46_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G164700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.7e-43
Identity = 97/116 (83.62%), Postives = 103/116 (88.79%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMG GILARA VQAYRQALTNASK+GVAQETIQNT+RRASKVMTEQEAR+
Sbjct: 1   MAAKILANLIVMGGGILARAVVQAYRQALTNASKNGVAQETIQNTIRRASKVMTEQEARR 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEEI+KKYD LFE NA+ GSFYLQSKVHRAKE LE + Q K Q  PS
Sbjct: 61  ILGVTEETPWEEIIKKYDNLFENNAKNGSFYLQSKVHRAKECLEAVQQGKSQGTPS 116

[Close]

BLAST of CmoCh09G013370 vs. TAIR10
Match: AT3G59280.1 (AT3G59280.1 Protein Transporter, Pam16)

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-40
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MA ++LANLIVMGSGI+ RA  QAYRQAL NASKSGVAQE +QN VR+A K +TEQEARQ
Sbjct: 1   MAGRLLANLIVMGSGIIGRAVFQAYRQALANASKSGVAQEAMQNGVRQAGKAITEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT +T WEEI++KYD LFE NA+ GSFYLQSKVHRAKE LE +Y+S+G   PS
Sbjct: 61  ILGVTEKTSWEEILQKYDKLFENNAKAGSFYLQSKVHRAKECLEVVYRSQGNGTPS 116

[Close]

BLAST of CmoCh09G013370 vs. TAIR10
Match: AT5G61880.1 (AT5G61880.1 Protein Transporter, Pam16)

HSP 1 Score: 135.6 bits (340), Expect = 2.0e-32
Identity = 75/108 (69.44%), Postives = 89/108 (82.41%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAA++LA++IVMGSGI+ARA  QAYRQAL NASK+GVA E  Q T++R   +  E EARQ
Sbjct: 1   MAARVLASVIVMGSGIIARACTQAYRQALANASKTGVAHEATQ-TIKRGLTI-GEAEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQ 109
           ILGVT ++ W+EI+KKYD LFE+NAQ GSFYLQSKVHRAKE LET YQ
Sbjct: 61  ILGVTEKSSWDEILKKYDTLFERNAQNGSFYLQSKVHRAKECLETAYQ 106

[Close]

BLAST of CmoCh09G013370 vs. NCBI nr
Match: gi|659127284|ref|XP_008463624.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 8.9e-51
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEE+VKKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ KGQDAPS
Sbjct: 61  ILGVTEETPWEEVVKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQIKGQDAPS 116

[Close]

BLAST of CmoCh09G013370 vs. NCBI nr
Match: gi|449443552|ref|XP_004139541.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 1.2e-50
Identity = 109/116 (93.97%), Postives = 113/116 (97.41%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQET+QNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETMQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ETPWEE+ KKYDALFE+NAQTGSFYLQSKVHRAKERLETLYQ+KGQDAPS
Sbjct: 61  ILGVTEETPWEEVAKKYDALFERNAQTGSFYLQSKVHRAKERLETLYQNKGQDAPS 116

[Close]

BLAST of CmoCh09G013370 vs. NCBI nr
Match: gi|659106003|ref|XP_008453226.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like isoform X1 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.6e-44
Identity = 99/116 (85.34%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAK+LA+LIV GS I+ RA  QAY+QAL NASKSGVAQETIQNTVRRASKVMTEQEARQ
Sbjct: 1   MAAKVLAHLIVSGSVIIGRAIAQAYQQALRNASKSGVAQETIQNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT E PWEEIVKKYD+LFE+NAQTGSFYLQSKVHRAKERLETLY SK QD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDSLFERNAQTGSFYLQSKVHRAKERLETLYHSKDQDVPS 116

[Close]

BLAST of CmoCh09G013370 vs. NCBI nr
Match: gi|802559894|ref|XP_012066242.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas])

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILANLIVMGSGILARAFVQAYRQAL NASKSGVAQETIQNT+R+ SKVMTEQEARQ
Sbjct: 1   MAAKILANLIVMGSGILARAFVQAYRQALANASKSGVAQETIQNTIRKGSKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT ET WEEIVKKYD LFE+NA+ GSFYLQSKVHRAKE LE +++ KG+  PS
Sbjct: 61  ILGVTEETAWEEIVKKYDTLFERNAKNGSFYLQSKVHRAKECLEAVHRGKGEGTPS 116

[Close]

BLAST of CmoCh09G013370 vs. NCBI nr
Match: gi|778656004|ref|XP_011660201.1| (PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.4e-43
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1


Query: 1   MAAKILANLIVMGSGILARAFVQAYRQALTNASKSGVAQETIQNTVRRASKVMTEQEARQ 60
           MAAKILA+LIV GS ++ RA  QAY+QA+ NAS SGVAQETI+NTVRRASKVMTEQEARQ
Sbjct: 1   MAAKILAHLIVSGSVVIGRAVAQAYQQAIRNASNSGVAQETIRNTVRRASKVMTEQEARQ 60

Query: 61  ILGVTPETPWEEIVKKYDALFEKNAQTGSFYLQSKVHRAKERLETLYQSKGQDAPS 117
           ILGVT E PWEEIVKKYDALFE+NAQTGSFYLQSKVHRAKERLETL+ SKGQD PS
Sbjct: 61  ILGVTEEMPWEEIVKKYDALFERNAQTGSFYLQSKVHRAKERLETLHHSKGQDGPS 116

The following BLAST results are available for this feature:

BLAST of CmoCh09G013370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TIM16_DANRE	6.2e-12	48.11	Mitochondrial import inner membrane translocase subunit tim16 OS=Danio rerio GN=...	[more]
TIM16_SCHPO	1.2e-10	39.66	Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharom...	[more]
TIM16_MOUSE	3.4e-10	41.74	Mitochondrial import inner membrane translocase subunit TIM16 OS=Mus musculus GN...	[more]
TIM16_HUMAN	4.5e-10	41.74	Mitochondrial import inner membrane translocase subunit TIM16 OS=Homo sapiens GN...	[more]
TIM16_XENTR	7.6e-10	44.34	Mitochondrial import inner membrane translocase subunit tim16 OS=Xenopus tropica...	[more]

BLAST of CmoCh09G013370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW69_CUCSA	8.1e-51	93.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G185100 PE=4 SV=1	[more]
A0A067LED2_JATCU	9.6e-44	83.62	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23812 PE=4 SV=1	[more]
A0A0A0LSD2_CUCSA	1.6e-43	83.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011490 PE=4 SV=1	[more]
C6T494_SOYBN	2.1e-43	84.48	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
I1MP46_SOYBN	3.7e-43	83.62	Uncharacterized protein OS=Glycine max GN=GLYMA_16G164700 PE=4 SV=1	[more]

BLAST of CmoCh09G013370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59280.1	5.8e-40	72.41	Protein Transporter, Pam16	[more]
AT5G61880.1	2.0e-32	69.44	Protein Transporter, Pam16	[more]

BLAST of CmoCh09G013370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127284\|ref\|XP_008463624.1\|	8.9e-51	94.83	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|449443552\|ref\|XP_004139541.1\|	1.2e-50	93.97	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Cucumi...	[more]
gi\|659106003\|ref\|XP_008453226.1\|	3.6e-44	85.34	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like is...	[more]
gi\|802559894\|ref\|XP_012066242.1\|	1.4e-43	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatrop...	[more]
gi\|778656004\|ref\|XP_011660201.1\|	2.4e-43	83.62	PREDICTED: mitochondrial import inner membrane translocase subunit tim16-like [C...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005341	Tim16

Vocabulary: **Cellular Component**
Term	Definition
GO:0005744	mitochondrial inner membrane presequence translocase complex

Vocabulary: **Biological Process**
Term	Definition
GO:0030150	protein import into mitochondrial matrix

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030150	protein import into mitochondrial matrix
cellular_component	GO:0005744	mitochondrial inner membrane presequence translocase complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh09G013370.1	CmoCh09G013370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005341	Mitochondrial import inner membrane translocase subunit Tim16	PANTHER	PTHR12388	MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE	coord: 1..110 score: 5.2
None	No IPR available	PANTHER	PTHR12388:SF1	SUBFAMILY NOT NAMED	coord: 1..110 score: 5.2
None	No IPR available	PFAM	PF03656	Pam16	coord: 1..111 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh09G013370	CmaCh09G012150	Cucurbita maxima (Rimu)	cmacmoB029
CmoCh09G013370	Cp4.1LG06g10170	Cucurbita pepo (Zucchini)	cmocpeB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh09G013370	Melon (DHL92) v3.6.1	cmomedB000
CmoCh09G013370	Cucumber (Chinese Long) v3	cmocucB0024
CmoCh09G013370	Watermelon (97103) v2	cmowmbB028
CmoCh09G013370	Wax gourd	cmowgoB0001
CmoCh09G013370	Wax gourd	cmowgoB0004
CmoCh09G013370	Cucumber (Gy14) v1	cgycmoB0082
CmoCh09G013370	Wild cucumber (PI 183967)	cmocpiB020
CmoCh09G013370	Cucumber (Chinese Long) v2	cmocuB020
CmoCh09G013370	Melon (DHL92) v3.5.1	cmomeB000
CmoCh09G013370	Watermelon (Charleston Gray)	cmowcgB027
CmoCh09G013370	Watermelon (97103) v1	cmowmB015
CmoCh09G013370	Bottle gourd (USVL1VR-Ls)	cmolsiB025
CmoCh09G013370	Cucumber (Gy14) v2	cgybcmoB551