Cp4.1LG06g09950 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g09950
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Rieske domain containing protein
Location	Cp4.1LG06 : 10144498 .. 10148866 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGGCGCTCCATTTTCATTGACCCTTCCCGTTATCCATTTCATGTGGTCTATGGCAAATCCTCCGTTTTCTCTCTCTAAATCCCTCTCTCTCTCTCCTCCCCTGCTTCTTCTCTCACTGTCATTCACCCCCTCCATTCCCCTTCCACTTCCACCTCCCAATGGCCGTCAATTCCACTAACCTCACTTCCCATTTTGCCCTCCCTTTCCGCCGGAACCATCCGATCTCCTCCCCATGCACCGCCGCCCTTCCCATTCTCAAACCCGCCCTTCGCCGTTCCCTTTTCGCCTCTCCTCCATCCGGTCCCCGGAAAATCTTGTGCAAAGCGTCGGAGGTCTCGGTGGCTGAGGAATCGTCGGCGTCTGGTAACTGGGTGCCCGTGGTTCCGTTGTCGGCGCTGCCGAAAGGGGAGCGGCGCGTGATTATTCAGGGTGGGGAGACGGTTTTGCTTCTTTGGTATAAGGAGAGGATTTTTGCTATTGAGAATCGTTCCCCTGCTGAAGGTGCTTACACTGAAGGTCTCCTTAATGCCAAACTCACTAAGGTTAATTTCATTTCCTCTGTTTCTTCTTTTCTTGTGACTGTCAAAGAATTGTAGAATTATCTGAATTCTGCCCTTGTTTCATATGATTCCTAGAGAATAACAATAATGATTTCCCAATTGGGGAGGACATATTTTCATGATTTAGAGAAGATTAGGTTCGTTATTGTATCTAGGACAGTTAGGAATCACGAATCTCTACGATAGTATGATATTGTCCACTTTGAGTATAAGCTCTCACGGCTTTGCTTTTGGTTTCTCCAAAAGGCCTCGTACCAATGGAGATGTATTACTTACTTGTAAACCCAGGATCGTTTTCTTAATTAGACAATGCAAGACTTCCTCCCAACAATCCTCAACAATCCTCCTCTCGAACAAAGTGTACCATAGAGCTTTCCCTGAGGCCTATATAGAGTCTTTGAACAGTCTCTCTCCTTAATTGAGGCTTGACTCCTTTCTCTAGAGCCTTCAAACAAAATACACTATTTGTTCGACACTTGAGTCGCTTTTGACTATACTTTCGAAGGTCCCAATTTCTTTGTTCGATATTTGAGGATTCTGTTGACATGACTAAGTTAAGGGCATGACTCTGATACCATGTTAGGAATCACGAATCTCCATAATGGTATGATATTGTCCACTTTGAGCCTAAGCTCTCTGCTTTTGGTTTCCCCAAAAGGCCTTATATGAAGGGAGATGTATTCCCTACTTATAAACCCATGACCATTCCCTTAATTAGTCAATGTGGGAGCCCTCGAACAAAGTACACTATTTATTCGACACTTGAGTCACTTTTGACTATACTTTCGAGGGTCTCAATTTCTTTGTTCGATATTTGAGGATTCTGTTGACATGACTAAGTCAAGGGCATGACTCTGATACCATGTTAGGAATCACGAATCCCCACAATGGTATGATATTGTCCACTTTGAGAATAAGCTCTCATGGATTTGCTTTTGGTTTCCCCCAAAGGCCTCATAACAATCTCCCCAATGGAGATGTATTCCTTATTTAATTCATGATCATTCCCTTAATTAGCCCATGTGGGACTCCCTCCCAACAATCCTCAACAATCCTCCCCTCGAACAAAGTACACCATAAAGCTTCCTCTAAGGCCTATGGAGCCCTTGTACAGCCTCCCCTCAATTGAAGCTCGACTCATTTCTCTGGAGCCCTCGAAGAAAGTACATCATTTGTTCGACACTTGAGTCACTTTGGACTACACTTTCGAAGGTCCCAATTTCTTTGTTCGATATTTGAGAATTCTATTGACATGGCTAAGTTAAGGGTACGACTCTGATACCATGTTAGGAATCACAAATCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCGTGACTTTGCTTTTGGTTTTTCCAAAAGGTCTCATACCAATAAAGATGTATTCCTTGCTTATAAACTCATGATCATTTCCTTGATTAGCTAATGTAGAACGCCCTCCCAACAATCCTCAACATGGACAACAGATTCCTCTTCTTCCTTGACAATGGTATGATAAGGAGTCAATTGGGTCAAGCTCGATTTCACCTAAACACCTGATAGAATGGAAATGTTCTACTCCTTATGGTTGGGGAGTTCCTCAGTTAATTAAGAGGAAGATCATGGATTTATAAGCTAGGAATACTATCTCCGTTGGTACGAGGTCTTTTGGGAAAACCAAAAGTAAACCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTCGTGATTCCTAACATCTACCACCGTCGACTGGCAAGATAAAACTTTGATTTTCACTCATTCAAATTGACTGTTGGGCTCCAATGTTCTTAATATATATATATCATCATTTCAGTTTTTGAAACTAGACTAAGTTCTAATGCTTGCAATGTAGAACACTTGATTGAATGATCATGCCCTTTCTCTACTCAGGATGGCTGTATTGTCTGTCCAACGACAGATAGCACATTTGACCTCCAAACTGGAGAAATCAAGGAATGGTATCCAAACAACCCTGTTCTCAGAGTCCTCACACCAGCCTTAAGGAAGCTTTTTGTATACCCTGTAAAAACTGATGAAAACAACATTTATATCAACATGAGGGGAAACGTGATATCAGATGCATCTGCTGAGATTGTCTTCAGTGGGAAAGCTCAACCCGGTGTAACTGCTACCGATGTCAATGTCGACGAGGTAACTATGAAATTGTTTAGTCGAACGTATTCTATTTTTTTGCCGATAGTTTTCTTCAGTTCTTGAACTTCTACCTTGTGTTATGTCCATATCGACGAGGTAACTATGGAATTGTTTAGTTGAGCGTATTCTGTTTTTTTGCCGATAGTTTTCTTCCGTTCTTGAACTTCTACCCTTATGTTATGTTCATGTCGACGAGGTAACTATGCAATGGTTTAGTCAAACGTATTCTGTTTTTTTGTCGATAGTTTTCTTCCGTTCTTGAACTTCTTCCTTGTGTTATGTTCATGTCGACGAGGTAACTATGAAATTGTTTAGTCGAACGTATTCTGTTTTTTCTGCCGATAGTTTTCTTCAGTTCTTGAACTTCTACCTCGTGTTATGTCCATGTCGACGAGGTAACTATGTAATGGTTTAGTCGAACGTATTCTGTTTTTTTGTCGATAGTTTTCTTCAGTTCTTGAACTTCTACCTTGTGTTATGTTCATGTCGACGAGTTAATTATGGAATGGTTTAGTCGAACGTATTCTGCTTTTTCGCTAATAGTTTTTTTTAGTTCTTGAACTTCTACCTTGTGTTATGTTCATGTCGACGAGGTAACTATGGAATTGTTTAGTCGAATATATTCTGTTATTTTGCCGATAGTTTTCTTCCGTTCTTGAACTTCTACCTTGTGTTATGTCCATGTCGACGAGGTAACTATGGAATGGTTTAGTCGAACGTATTCTGCTTTTTCGCTAATAGTTTTCTTCATGGTTTAGTCGAACTTATTCTGCTTTTCGCTAATAGTTTTCTTCAGTTCTTGAACTTCTACCTTGTATTATGTCCATATCGACGTTCTTGAACTTCTACCTTGTGTTAACCATTCAAGGTGAGAATGGTGGTTGATGAAGATCTTGGAGGGTTTGGCTTCACTGGAAAGAATGAATTGATAAATGGAAAGGCAGCAGTGATTGGGTTCTTGTTGTTGTTGGATTTTGAGCTCTTAACTGGGAAGGGTCTTCTCAAGGGAACTGGATTCTTGGACTTCATTTATTCTGCTTCAGATGCTTTCAAATAGATGTACTGTAAGTTCATATTTTCTTCTGCCTTCGCATATATCATCATATCTGTTCTTGTATACTATATACATATACATACCAAGAAATTAGATGCTTTTGTTGAACCAAAAAAATGTGCCCATCTTTTATTGAAGTTTACAGATGAACTCGACTCGAAAACGTCCTGTTTATTCAACTGATAATCAGATCAAAACATTCATTAACAACATTCTATAGGAAAACTTGTGATTTCATTCCAGCTTCTGGGCCTGTAGGCTTTGTGGTGAGTTAGGGGCAAGTAGTAGTCGTCTAGGCGACGCTCCCTCCAAAACCAGCCTCCCACTCCCGCTCCCGCTCCCGCTCCCGCTAGCTTCATATACGGGCATTCCCGTCCCGACTAGGGATGTCCTCCTCGAACCGTTACCCGAAAGTAGCAACCTGAACGTCCAGTTCAGGATGTTGGGTGCAAACATCCTGTATAGCAGGAAGATATCATACCAGCTTGGATACTTAACGTATATATTTCCCCGACACGCCCCCGACACAATCAACTTTGCAAACTCCTCAACCGGGCCTCCGGTTACATGC

mRNA sequence

CACCGGCGCTCCATTTTCATTGACCCTTCCCGTTATCCATTTCATGTGGTCTATGGCAAATCCTCCGTTTTCTCTCTCTAAATCCCTCTCTCTCTCTCCTCCCCTGCTTCTTCTCTCACTGTCATTCACCCCCTCCATTCCCCTTCCACTTCCACCTCCCAATGGCCGTCAATTCCACTAACCTCACTTCCCATTTTGCCCTCCCTTTCCGCCGGAACCATCCGATCTCCTCCCCATGCACCGCCGCCCTTCCCATTCTCAAACCCGCCCTTCGCCGTTCCCTTTTCGCCTCTCCTCCATCCGGTCCCCGGAAAATCTTGTGCAAAGCGTCGGAGGTCTCGGTGGCTGAGGAATCGTCGGCGTCTGGTAACTGGGTGCCCGTGGTTCCGTTGTCGGCGCTGCCGAAAGGGGAGCGGCGCGTGATTATTCAGGGTGGGGAGACGGTTTTGCTTCTTTGGTATAAGGAGAGGATTTTTGCTATTGAGAATCGTTCCCCTGCTGAAGGTGCTTACACTGAAGGTCTCCTTAATGCCAAACTCACTAAGGATGGCTGTATTGTCTGTCCAACGACAGATAGCACATTTGACCTCCAAACTGGAGAAATCAAGGAATGGTATCCAAACAACCCTGTTCTCAGAGTCCTCACACCAGCCTTAAGGAAGCTTTTTGTATACCCTGTAAAAACTGATGAAAACAACATTTATATCAACATGAGGGGAAACGTGATATCAGATGCATCTGCTGAGATTGTCTTCAGTGGGAAAGCTCAACCCGGTGTAACTGCTACCGATGTCAATGTCGACGAGGTGAGAATGGTGGTTGATGAAGATCTTGGAGGGTTTGGCTTCACTGGAAAGAATGAATTGATAAATGGAAAGGCAGCAGTGATTGGGTTCTTGTTGTTGTTGGATTTTGAGCTCTTAACTGGGAAGGGTCTTCTCAAGGGAACTGGATTCTTGGACTTCATTTATTCTGCTTCAGATGCTTTCAAATAGATGTACTGTAAGTTCATATTTTCTTCTGCCTTCGCATATATCATCATATCTGTTCTTGTATACTATATACATATACATACCAAGAAATTAGATGCTTTTGTTGAACCAAAAAAATGTGCCCATCTTTTATTGAAGTTTACAGATGAACTCGACTCGAAAACGTCCTGTTTATTCAACTGATAATCAGATCAAAACATTCATTAACAACATTCTATAGGAAAACTTGTGATTTCATTCCAGCTTCTGGGCCTGTAGGCTTTGTGGTGAGTTAGGGGCAAGTAGTAGTCGTCTAGGCGACGCTCCCTCCAAAACCAGCCTCCCACTCCCGCTCCCGCTCCCGCTCCCGCTAGCTTCATATACGGGCATTCCCGTCCCGACTAGGGATGTCCTCCTCGAACCGTTACCCGAAAGTAGCAACCTGAACGTCCAGTTCAGGATGTTGGGTGCAAACATCCTGTATAGCAGGAAGATATCATACCAGCTTGGATACTTAACGTATATATTTCCCCGACACGCCCCCGACACAATCAACTTTGCAAACTCCTCAACCGGGCCTCCGGTTACATGC

Coding sequence (CDS)

ATGGCCGTCAATTCCACTAACCTCACTTCCCATTTTGCCCTCCCTTTCCGCCGGAACCATCCGATCTCCTCCCCATGCACCGCCGCCCTTCCCATTCTCAAACCCGCCCTTCGCCGTTCCCTTTTCGCCTCTCCTCCATCCGGTCCCCGGAAAATCTTGTGCAAAGCGTCGGAGGTCTCGGTGGCTGAGGAATCGTCGGCGTCTGGTAACTGGGTGCCCGTGGTTCCGTTGTCGGCGCTGCCGAAAGGGGAGCGGCGCGTGATTATTCAGGGTGGGGAGACGGTTTTGCTTCTTTGGTATAAGGAGAGGATTTTTGCTATTGAGAATCGTTCCCCTGCTGAAGGTGCTTACACTGAAGGTCTCCTTAATGCCAAACTCACTAAGGATGGCTGTATTGTCTGTCCAACGACAGATAGCACATTTGACCTCCAAACTGGAGAAATCAAGGAATGGTATCCAAACAACCCTGTTCTCAGAGTCCTCACACCAGCCTTAAGGAAGCTTTTTGTATACCCTGTAAAAACTGATGAAAACAACATTTATATCAACATGAGGGGAAACGTGATATCAGATGCATCTGCTGAGATTGTCTTCAGTGGGAAAGCTCAACCCGGTGTAACTGCTACCGATGTCAATGTCGACGAGGTGAGAATGGTGGTTGATGAAGATCTTGGAGGGTTTGGCTTCACTGGAAAGAATGAATTGATAAATGGAAAGGCAGCAGTGATTGGGTTCTTGTTGTTGTTGGATTTTGAGCTCTTAACTGGGAAGGGTCTTCTCAAGGGAACTGGATTCTTGGACTTCATTTATTCTGCTTCAGATGCTTTCAAATAG

Protein sequence

MAVNSTNLTSHFALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVSVAEESSASGNWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK

Homology

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BLAST of Cp4.1LG06g09950 vs. TrEMBL
Match: A0A0A0KXX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650460 PE=4 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 1.5e-140
Identity = 253/277 (91.34%), Postives = 263/277 (94.95%), Query Frame = 1


Query: 1   MAVNSTNLTSHFALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVS 60
           MA+NSTN TSHFA  FRR HPIS+PCTAALP+LKPAL RSLFASP    RKI CKASE+S
Sbjct: 1   MALNSTNFTSHFASTFRRIHPISAPCTAALPLLKPALHRSLFASPLPLARKISCKASEIS 60

Query: 61  VAEESSASGNWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYTEG 120
           VAEESSASGNWVPVVPLSALP+GERRVIIQGGET+LLLWYK+RIFAIENRSPAEGAYTEG
Sbjct: 61  VAEESSASGNWVPVVPLSALPRGERRVIIQGGETILLLWYKDRIFAIENRSPAEGAYTEG 120

Query: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNI 180
           LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYP NPVLRVLTPALRKLF+Y VKTDENNI
Sbjct: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPKNPVLRVLTPALRKLFIYAVKTDENNI 180

Query: 181 YINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELINGKA 240
           YINMRGNVISD+SAEIVFSGKAQPGVTATDVNVDEVRMVVDEDL GFGFTGKNE+INGKA
Sbjct: 181 YINMRGNVISDSSAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLEGFGFTGKNEVINGKA 240

Query: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
           AVIGFLLLLDFELLTGKGLLKGTGFLDFIYS SDAFK
Sbjct: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSDAFK 277

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BLAST of Cp4.1LG06g09950 vs. TrEMBL
Match: D7TLI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06720 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 1.1e-109
Identity = 208/279 (74.55%), Postives = 233/279 (83.51%), Query Frame = 1


Query: 5   STNLTSHF---ALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVSV 64
           +T LT H    + P RR  P+       LP   P   RS   +     R+I CKA+EVSV
Sbjct: 6   ATKLTPHLLSLSSPLRRRKPLLHH----LPPPLPRNDRSSALTLGLSSRRITCKATEVSV 65

Query: 65  AEESSASG---NWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYT 124
           AEESSA+G   NWVPVVPLSALPKGERRVIIQ GET+LLLWYK++++AIENRSPAEGAY+
Sbjct: 66  AEESSAAGDGGNWVPVVPLSALPKGERRVIIQDGETILLLWYKDQVYAIENRSPAEGAYS 125

Query: 125 EGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDEN 184
           EGLLNAKLT+DGCIVCPTTDSTFDLQTGEIK+WYP NPVLRVLTPALR LF+YPVKTD+ 
Sbjct: 126 EGLLNAKLTQDGCIVCPTTDSTFDLQTGEIKDWYPKNPVLRVLTPALRTLFIYPVKTDDK 185

Query: 185 NIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELING 244
           NIYI M G V SDASAEIVFSGKAQPG+TATDVNV+EVRM+VDED  GFGFTGKNELING
Sbjct: 186 NIYIRMSGGVSSDASAEIVFSGKAQPGLTATDVNVEEVRMIVDEDQEGFGFTGKNELING 245

Query: 245 KAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
           KAAV+GFLLLLDFELLTGKG+LKGTGFLDF+Y+ S+AFK
Sbjct: 246 KAAVVGFLLLLDFELLTGKGILKGTGFLDFLYAVSNAFK 280

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BLAST of Cp4.1LG06g09950 vs. TrEMBL
Match: K7K5E9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G231900 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.0e-108
Identity = 204/263 (77.57%), Postives = 231/263 (87.83%), Query Frame = 1


Query: 21  PISSPCTAALPIL-KPALRRSLFASPPSGPR-----KILCKASEVSVAEESSASG-NWVP 80
           P+S  C++   IL  P+  + LF    S  R     ++ CKA++VSVAEESSASG NWVP
Sbjct: 64  PLSISCSSKTHILCLPSPPKPLFLCRHSLLRYRSTPRLTCKAAQVSVAEESSASGDNWVP 123

Query: 81  VVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYTEGLLNAKLTKDGCIV 140
           VVPLSALPKGERRVIIQ GET+LLLWYK+++FAIENRSPAEGAYTEGLLNAKLT+DGCIV
Sbjct: 124 VVPLSALPKGERRVIIQDGETILLLWYKDQVFAIENRSPAEGAYTEGLLNAKLTQDGCIV 183

Query: 141 CPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNIYINMRGNVISDAS 200
           CP+TDSTFDL+TG+IKEWYP NPVLRVLTPALRKLF+YPVKTDE NIYI++RG V SDAS
Sbjct: 184 CPSTDSTFDLRTGDIKEWYPKNPVLRVLTPALRKLFIYPVKTDEQNIYISIRGGVRSDAS 243

Query: 201 AEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELINGKAAVIGFLLLLDFEL 260
           AEIVFSGKAQPG TATDVNVDEV+M+VDED  GFGFTGKNE+ING+AAVIGFLLLLDFEL
Sbjct: 244 AEIVFSGKAQPGFTATDVNVDEVKMIVDEDQEGFGFTGKNEIINGRAAVIGFLLLLDFEL 303

Query: 261 LTGKGLLKGTGFLDFIYSASDAF 277
           LTGKGLLKGTGFLDF+YS ++AF
Sbjct: 304 LTGKGLLKGTGFLDFLYSVTNAF 326

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BLAST of Cp4.1LG06g09950 vs. TrEMBL
Match: A0A059BV74_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02968 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.2e-106
Identity = 196/250 (78.40%), Postives = 221/250 (88.40%), Query Frame = 1


Query: 36  ALRRSLFASPPSGPR-KILCKASEVSVAEES--------SASGNWVPVVPLSALPKGERR 95
           ALR S   + P+G R  + C+A+EVS+A+          S+S NWVPVVPL+ALP+GERR
Sbjct: 42  ALRLSRPRTAPAGGRGAVSCEATEVSLADNEPSSSSPSPSSSENWVPVVPLAALPRGERR 101

Query: 96  VIIQGGETVLLLWYKERIFAIENRSPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTG 155
           VIIQ GET+LLLWYK+R+FAIENRSPAEGAY+EGLLNAKLT+DGCI+CPTTDSTFDLQ+G
Sbjct: 102 VIIQDGETILLLWYKDRVFAIENRSPAEGAYSEGLLNAKLTQDGCIICPTTDSTFDLQSG 161

Query: 156 EIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGV 215
            IK+WYP NPVLR LTPALR LFVYPVKTDE NI+INM+GNV SDASAEIVFSGKAQPG+
Sbjct: 162 AIKDWYPKNPVLRALTPALRTLFVYPVKTDEENIFINMKGNVKSDASAEIVFSGKAQPGI 221

Query: 216 TATDVNVDEVRMVVDEDLGGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFL 275
           TA+DVNVDEVRMVVDED GGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFL
Sbjct: 222 TASDVNVDEVRMVVDEDPGGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFL 281

Query: 276 DFIYSASDAF 277
           DF+Y+ S+AF
Sbjct: 282 DFLYAVSNAF 291

[Close]

BLAST of Cp4.1LG06g09950 vs. TrEMBL
Match: A0A0L9TAV7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s010800 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 7.2e-106
Identity = 194/234 (82.91%), Postives = 217/234 (92.74%), Query Frame = 1


Query: 44  SPPSGPRKILCKASEVSVAEESSASG-NWVPVVPLSALPKGERRVIIQGGETVLLLWYKE 103
           S PS    + CKA++VSVAEESSASG NWVPVVPL+ALP+GERRVIIQ GET+LLLWYK+
Sbjct: 47  SYPSCAPSLTCKAAQVSVAEESSASGDNWVPVVPLAALPRGERRVIIQDGETILLLWYKD 106

Query: 104 RIFAIENRSPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLT 163
           ++FAIENRSPAEGAYTEGLLNAKLT+DGCIVCP+TDSTFDL+TG+IKEWYP NPVLRVLT
Sbjct: 107 QVFAIENRSPAEGAYTEGLLNAKLTQDGCIVCPSTDSTFDLRTGDIKEWYPKNPVLRVLT 166

Query: 164 PALRKLFVYPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDE 223
           PALRKLF YPVK+DE NIYI++RG   +DASAEIVFSGKAQPGVTATDVNV+EV+MVVDE
Sbjct: 167 PALRKLFTYPVKSDEQNIYISLRGGK-TDASAEIVFSGKAQPGVTATDVNVEEVKMVVDE 226

Query: 224 DLGGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAF 277
           D  GFGFTGKNE+ING+AAVIGFLLLLDFELLTGKGLLKGTGFLDF+YS S+AF
Sbjct: 227 DQEGFGFTGKNEIINGRAAVIGFLLLLDFELLTGKGLLKGTGFLDFLYSVSNAF 279

[Close]

BLAST of Cp4.1LG06g09950 vs. TAIR10
Match: AT1G71500.1 (AT1G71500.1 Rieske (2Fe-2S) domain-containing protein)

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-102
Identity = 181/227 (79.74%), Postives = 205/227 (90.31%), Query Frame = 1


Query: 52  ILCKASEVSVAEESSASG-NWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENR 111
           + C+A+EVS +   S  G NWVPVVPLSALPKGERRV+IQ  ET+LLLWYK  +FAIENR
Sbjct: 61  VRCEATEVSSSSSVSTPGRNWVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENR 120

Query: 112 SPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFV 171
           SPAEGAY+EGLLNA+LT+DGCIVCP+TDSTFDL+TGEI+EWYP NPVLRVLTPALRKLFV
Sbjct: 121 SPAEGAYSEGLLNARLTQDGCIVCPSTDSTFDLRTGEIREWYPKNPVLRVLTPALRKLFV 180

Query: 172 YPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFT 231
           YPVK DE NIYI++R +  ++A+AEIVFSGKAQPG+TAT+VNVDEVRM+VDE   GFGFT
Sbjct: 181 YPVKYDEENIYISIRDSGKTEAAAEIVFSGKAQPGLTATNVNVDEVRMIVDEGSEGFGFT 240

Query: 232 GKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
            KNE+INGKAAVIGFLLLLDFELLTGKGLLKGTGFLDF+YSASDAFK
Sbjct: 241 KKNEVINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFLYSASDAFK 287

[Close]

BLAST of Cp4.1LG06g09950 vs. NCBI nr
Match: gi|659119378|ref|XP_008459624.1| (PREDICTED: uncharacterized protein LOC103498694 [Cucumis melo])

HSP 1 Score: 507.7 bits (1306), Expect = 1.3e-140
Identity = 252/277 (90.97%), Postives = 263/277 (94.95%), Query Frame = 1


Query: 1   MAVNSTNLTSHFALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVS 60
           MA+NSTN TSHF   FRR HPIS+PCTAALP+LKPAL RSL ASP    RKI CKASE+S
Sbjct: 1   MALNSTNFTSHFPSTFRRIHPISAPCTAALPLLKPALHRSLLASPLPPARKISCKASEIS 60

Query: 61  VAEESSASGNWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYTEG 120
           VAEESSASGNWVPVVPLSALP+GERRVIIQGGET+LLLWYK+RIFAIENRSPAEGAYTEG
Sbjct: 61  VAEESSASGNWVPVVPLSALPRGERRVIIQGGETILLLWYKDRIFAIENRSPAEGAYTEG 120

Query: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNI 180
           LLNAKLTKDGCIVCPTTDSTFDLQTG+IKEWYPNNPVLRVLTPALRKLF+YPVKTDENNI
Sbjct: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGDIKEWYPNNPVLRVLTPALRKLFIYPVKTDENNI 180

Query: 181 YINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELINGKA 240
           YINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEV+MVVDEDL GFGFTGKNE+INGKA
Sbjct: 181 YINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVKMVVDEDLEGFGFTGKNEVINGKA 240

Query: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
           AVIGFLLLLDFELLTGKGLLKGTGFLDFIYS SDAFK
Sbjct: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSDAFK 277

[Close]

BLAST of Cp4.1LG06g09950 vs. NCBI nr
Match: gi|449447593|ref|XP_004141552.1| (PREDICTED: uncharacterized protein LOC101206141 [Cucumis sativus])

HSP 1 Score: 506.9 bits (1304), Expect = 2.2e-140
Identity = 253/277 (91.34%), Postives = 263/277 (94.95%), Query Frame = 1


Query: 1   MAVNSTNLTSHFALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVS 60
           MA+NSTN TSHFA  FRR HPIS+PCTAALP+LKPAL RSLFASP    RKI CKASE+S
Sbjct: 1   MALNSTNFTSHFASTFRRIHPISAPCTAALPLLKPALHRSLFASPLPLARKISCKASEIS 60

Query: 61  VAEESSASGNWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYTEG 120
           VAEESSASGNWVPVVPLSALP+GERRVIIQGGET+LLLWYK+RIFAIENRSPAEGAYTEG
Sbjct: 61  VAEESSASGNWVPVVPLSALPRGERRVIIQGGETILLLWYKDRIFAIENRSPAEGAYTEG 120

Query: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDENNI 180
           LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYP NPVLRVLTPALRKLF+Y VKTDENNI
Sbjct: 121 LLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPKNPVLRVLTPALRKLFIYAVKTDENNI 180

Query: 181 YINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELINGKA 240
           YINMRGNVISD+SAEIVFSGKAQPGVTATDVNVDEVRMVVDEDL GFGFTGKNE+INGKA
Sbjct: 181 YINMRGNVISDSSAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLEGFGFTGKNEVINGKA 240

Query: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
           AVIGFLLLLDFELLTGKGLLKGTGFLDFIYS SDAFK
Sbjct: 241 AVIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSDAFK 277

[Close]

BLAST of Cp4.1LG06g09950 vs. NCBI nr
Match: gi|1021517406|ref|XP_016202207.1| (PREDICTED: uncharacterized protein LOC107643147 [Arachis ipaensis])

HSP 1 Score: 404.4 bits (1038), Expect = 1.6e-109
Identity = 200/231 (86.58%), Postives = 215/231 (93.07%), Query Frame = 1


Query: 47  SGPRKILCKASEVSVAEESSASG--NWVPVVPLSALPKGERRVIIQGGETVLLLWYKERI 106
           S  R++ CKA++VSVAEESS+SG  NWVPVVPL ALPKGERRVIIQ GET+LLLWYK+ +
Sbjct: 54  SSRRRVACKAAQVSVAEESSSSGGENWVPVVPLGALPKGERRVIIQDGETILLLWYKDEV 113

Query: 107 FAIENRSPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPA 166
           FAIENRSPAEGAY+EGLLNAKLT+DGCIVCPTTDSTFDL+TGEIKEWYP NPVLRVLTPA
Sbjct: 114 FAIENRSPAEGAYSEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPKNPVLRVLTPA 173

Query: 167 LRKLFVYPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDL 226
           LR LFVYPVKTDE NIYI+MRG V SDASAEIVFSGKAQPG+TA+DVNVDEVRMVVDED 
Sbjct: 174 LRSLFVYPVKTDEQNIYISMRGGVTSDASAEIVFSGKAQPGLTASDVNVDEVRMVVDEDS 233

Query: 227 GGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDA 276
            GFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYS S+A
Sbjct: 234 EGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSNA 284

[Close]

BLAST of Cp4.1LG06g09950 vs. NCBI nr
Match: gi|359495241|ref|XP_003634942.1| (PREDICTED: uncharacterized protein LOC100248314 [Vitis vinifera])

HSP 1 Score: 404.4 bits (1038), Expect = 1.6e-109
Identity = 208/279 (74.55%), Postives = 233/279 (83.51%), Query Frame = 1


Query: 5   STNLTSHF---ALPFRRNHPISSPCTAALPILKPALRRSLFASPPSGPRKILCKASEVSV 64
           +T LT H    + P RR  P+       LP   P   RS   +     R+I CKA+EVSV
Sbjct: 6   ATKLTPHLLSLSSPLRRRKPLLHH----LPPPLPRNDRSSALTLGLSSRRITCKATEVSV 65

Query: 65  AEESSASG---NWVPVVPLSALPKGERRVIIQGGETVLLLWYKERIFAIENRSPAEGAYT 124
           AEESSA+G   NWVPVVPLSALPKGERRVIIQ GET+LLLWYK++++AIENRSPAEGAY+
Sbjct: 66  AEESSAAGDGGNWVPVVPLSALPKGERRVIIQDGETILLLWYKDQVYAIENRSPAEGAYS 125

Query: 125 EGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPALRKLFVYPVKTDEN 184
           EGLLNAKLT+DGCIVCPTTDSTFDLQTGEIK+WYP NPVLRVLTPALR LF+YPVKTD+ 
Sbjct: 126 EGLLNAKLTQDGCIVCPTTDSTFDLQTGEIKDWYPKNPVLRVLTPALRTLFIYPVKTDDK 185

Query: 185 NIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDLGGFGFTGKNELING 244
           NIYI M G V SDASAEIVFSGKAQPG+TATDVNV+EVRM+VDED  GFGFTGKNELING
Sbjct: 186 NIYIRMSGGVSSDASAEIVFSGKAQPGLTATDVNVEEVRMIVDEDQEGFGFTGKNELING 245

Query: 245 KAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDAFK 278
           KAAV+GFLLLLDFELLTGKG+LKGTGFLDF+Y+ S+AFK
Sbjct: 246 KAAVVGFLLLLDFELLTGKGILKGTGFLDFLYAVSNAFK 280

[Close]

BLAST of Cp4.1LG06g09950 vs. NCBI nr
Match: gi|1012129628|ref|XP_015964610.1| (PREDICTED: uncharacterized protein LOC107488379 [Arachis duranensis])

HSP 1 Score: 403.7 bits (1036), Expect = 2.6e-109
Identity = 199/231 (86.15%), Postives = 215/231 (93.07%), Query Frame = 1


Query: 47  SGPRKILCKASEVSVAEESSASG--NWVPVVPLSALPKGERRVIIQGGETVLLLWYKERI 106
           S  R++ CKA++VS+AEESS+SG  NWVPVVPL ALPKGERRVIIQ GET+LLLWYK+ +
Sbjct: 54  SSRRRVACKAAQVSIAEESSSSGGENWVPVVPLGALPKGERRVIIQEGETILLLWYKDEV 113

Query: 107 FAIENRSPAEGAYTEGLLNAKLTKDGCIVCPTTDSTFDLQTGEIKEWYPNNPVLRVLTPA 166
           FAIENRSPAEGAY+EGLLNAKLT+DGCIVCPTTDSTFDL+TGEIKEWYP NPVLRVLTPA
Sbjct: 114 FAIENRSPAEGAYSEGLLNAKLTQDGCIVCPTTDSTFDLRTGEIKEWYPKNPVLRVLTPA 173

Query: 167 LRKLFVYPVKTDENNIYINMRGNVISDASAEIVFSGKAQPGVTATDVNVDEVRMVVDEDL 226
           LR LFVYPVKTDE NIYI+MRG V SDASAEIVFSGKAQPG+TA+DVNVDEVRMVVDED 
Sbjct: 174 LRSLFVYPVKTDEQNIYISMRGGVTSDASAEIVFSGKAQPGLTASDVNVDEVRMVVDEDS 233

Query: 227 GGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSASDA 276
            GFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYS S+A
Sbjct: 234 EGFGFTGKNELINGKAAVIGFLLLLDFELLTGKGLLKGTGFLDFIYSVSNA 284

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g09950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g09950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXX5_CUCSA	1.5e-140	91.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650460 PE=4 SV=1	[more]
D7TLI1_VITVI	1.1e-109	74.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06720 PE=4 SV=...	[more]
K7K5E9_SOYBN	2.0e-108	77.57	Uncharacterized protein OS=Glycine max GN=GLYMA_01G231900 PE=4 SV=1	[more]
A0A059BV74_EUCGR	4.2e-106	78.40	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02968 PE=4 SV=1	[more]
A0A0L9TAV7_PHAAN	7.2e-106	82.91	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan442s010800 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g09950 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71500.1	2.5e-102	79.74	Rieske (2Fe-2S) domain-containing protein	[more]

BLAST of Cp4.1LG06g09950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119378\|ref\|XP_008459624.1\|	1.3e-140	90.97	PREDICTED: uncharacterized protein LOC103498694 [Cucumis melo]	[more]
gi\|449447593\|ref\|XP_004141552.1\|	2.2e-140	91.34	PREDICTED: uncharacterized protein LOC101206141 [Cucumis sativus]	[more]
gi\|1021517406\|ref\|XP_016202207.1\|	1.6e-109	86.58	PREDICTED: uncharacterized protein LOC107643147 [Arachis ipaensis]	[more]
gi\|359495241\|ref\|XP_003634942.1\|	1.6e-109	74.55	PREDICTED: uncharacterized protein LOC100248314 [Vitis vinifera]	[more]
gi\|1012129628\|ref\|XP_015964610.1\|	2.6e-109	86.15	PREDICTED: uncharacterized protein LOC107488379 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0051537	2 iron, 2 sulfur cluster binding
GO:0008942	nitrite reductase [NAD(P)H] activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0042128	nitrate assimilation

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR017941	Rieske_2Fe-2S
IPR012748	Nitri_red_NirD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042128	nitrate assimilation
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0008942	nitrite reductase [NAD(P)H] activity
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g09950.1	Cp4.1LG06g09950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012748	Nitrite reductase [NAD(P)H] small subunit, NirD	PFAM	PF13806	Rieske_2	coord: 70..183 score: 1.2
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	GENE3D	G3DSA:2.102.10.10		coord: 66..185 score: 2.4
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	PROFILE	PS51296	RIESKE	coord: 71..182 score: 14
IPR017941	Rieske [2Fe-2S] iron-sulphur domain	unknown	SSF50022	ISP domain	coord: 70..184 score: 1.19
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 221..261 score: 3.6
None	No IPR available	PANTHER	PTHR21496	FERREDOXIN-RELATED	coord: 49..277 score: 3.7E
None	No IPR available	PANTHER	PTHR21496:SF0	RIESKE DOMAIN-CONTAINING PROTEIN	coord: 49..277 score: 3.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG06g09950	Cucsa.236980	Cucumber (Gy14) v1	cgycpeB0630
Cp4.1LG06g09950	CmaCh09G012500	Cucurbita maxima (Rimu)	cmacpeB062
Cp4.1LG06g09950	CmoCh09G012940	Cucurbita moschata (Rifu)	cmocpeB035
Cp4.1LG06g09950	Cla012489	Watermelon (97103) v1	cpewmB759
Cp4.1LG06g09950	Csa5G650460	Cucumber (Chinese Long) v2	cpecuB792
Cp4.1LG06g09950	MELO3C022193	Melon (DHL92) v3.5.1	cpemeB708
Cp4.1LG06g09950	ClCG08G000730	Watermelon (Charleston Gray)	cpewcgB712
Cp4.1LG06g09950	CSPI05G31110	Wild cucumber (PI 183967)	cpecpiB792
Cp4.1LG06g09950	Lsi08G000570	Bottle gourd (USVL1VR-Ls)	cpelsiB650
Cp4.1LG06g09950	MELO3C022193.2	Melon (DHL92) v3.6.1	cpemedB842
Cp4.1LG06g09950	CsaV3_5G040160	Cucumber (Chinese Long) v3	cpecucB0980
Cp4.1LG06g09950	Bhi06G000003	Wax gourd	cpewgoB0975
Cp4.1LG06g09950	CsGy5G030410	Cucumber (Gy14) v2	cgybcpeB696
Cp4.1LG06g09950	Carg27457	Silver-seed gourd	carcpeB1231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g09950	Cucurbita pepo (Zucchini)	cpecpeB462
Cp4.1LG06g09950	Cucurbita maxima (Rimu)	cmacpeB510
Cp4.1LG06g09950	Cucurbita moschata (Rifu)	cmocpeB468
Cp4.1LG06g09950	Wild cucumber (PI 183967)	cpecpiB777
Cp4.1LG06g09950	Cucumber (Chinese Long) v2	cpecuB775
Cp4.1LG06g09950	Melon (DHL92) v3.5.1	cpemeB725
Cp4.1LG06g09950	Cucumber (Gy14) v2	cgybcpeB259
Cp4.1LG06g09950	Cucumber (Chinese Long) v3	cpecucB0963
Cp4.1LG06g09950	Wax gourd	cpewgoB0974