Cp4.1LG06g06640 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g06640
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionNucleic acid-binding, OB-fold-like protein
LocationCp4.1LG06 : 4154357 .. 4156075 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGAATTTTGAAATCTTCCGTTGCTGTTACGCTTTATGTAGTGTTTTTCATGAATTGAGTAGGGAAAATTAGGTGTTGTTGGATCGCAGGTGGGGAGGCTAAATCAATGATTATGTAGATTGGAATGTTTGAACTATGTGCCCTAGAGCGATTATTAAACAATATGGATTGTGAGATAGGGTTTGGCGGATTACCTACATCTTACCGATGCGCTTAAAGGAACTTGAAACTAGAAATATGCATTGATTTTGCTCTACAAAACGTAATTTCATTATCAGTAGCTTGAACTGGATGCGTTAGAATGGCTAGGAAGAATCAAATCCCTGTGGTTTCCTGTTATTGACCATAATCTGCAGCTTGATAAATGAAGATTTGAACTGAAACTGAAGTGTTTGATGTTAATTTCTCACAAATCCCTAGCCCAATCTGCTTCTAGCTGGTCTGCAAACTATTGCCACTTGAATCTCTAGCTTTGAAATGAAATCTCTGCAATGAACTCATTTATCATGTTGTCTTATATGGTTATTTGTTTGCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA

mRNA sequence

TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA

Coding sequence (CDS)

ATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE
Homology
[Close]
BLAST of Cp4.1LG06g06640 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-44
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 1 

Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLVEYELVNV 142
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match: A0A0A0L242_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.5e-67
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1 

Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match: W9R7A6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012156 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.9e-58
Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 11  SRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDET 70
           ++ GLRKPVF+KV+QLKPGT+GHTL+VKV+SSNTVLQKGRSVS HLRQTRIAECLI DET
Sbjct: 16  AKPGLRKPVFIKVDQLKPGTSGHTLVVKVLSSNTVLQKGRSVSHHLRQTRIAECLISDET 75

Query: 71  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNN 130
           GTI+FTARNDQVD +KP TTIILRNAK+DMFKGSMRLAVDKWGR+EV EP  FVVKEDNN
Sbjct: 76  GTIVFTARNDQVDLMKPDTTIILRNAKVDMFKGSMRLAVDKWGRVEVTEPAQFVVKEDNN 135

Query: 131 LSLVEYELVNVAEE 145
           LSLVEYELVNV EE
Sbjct: 136 LSLVEYELVNVVEE 149

[Close]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match: M5X2T5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012670mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.2e-57
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 1 

Query: 11  SRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDET 70
           ++ GLRKPVF KVE LKP T+GHTL+ KV++SN VLQKGRSVSQHLRQTRI+ECLIGDET
Sbjct: 19  AKPGLRKPVFTKVELLKPETSGHTLVAKVLTSNPVLQKGRSVSQHLRQTRISECLIGDET 78

Query: 71  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNN 130
           GTILFTARNDQVD +KPGTT+ILRNA+IDMFKGSMRLAVDKWGRIEV EP NFVVKEDNN
Sbjct: 79  GTILFTARNDQVDLLKPGTTVILRNARIDMFKGSMRLAVDKWGRIEVTEPANFVVKEDNN 138

Query: 131 LSLVEYELVNVAEE 145
           LSLVEYELVNV E+
Sbjct: 139 LSLVEYELVNVQED 152

[Close]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match: A0A061GM87_THECC (Nucleic acid-binding OS=Theobroma cacao GN=TCM_029814 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 7.2e-57
Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 1 

Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILF 75
           RKPVFVKV+QLKPGTNGHTLI KV+SSN VLQKGR+ SQHLRQTRIAECL+GDETGTILF
Sbjct: 29  RKPVFVKVDQLKPGTNGHTLIAKVLSSNMVLQKGRAASQHLRQTRIAECLVGDETGTILF 88

Query: 76  TARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLVE 135
           TARNDQVD +KP  T+ILRNAKIDMFKGSMRLAVDKWGRIEV +P NFVVKEDNNLSLVE
Sbjct: 89  TARNDQVDLMKPVATVILRNAKIDMFKGSMRLAVDKWGRIEVTDPANFVVKEDNNLSLVE 148

Query: 136 YELVNVAEE 145
           YELVNV EE
Sbjct: 149 YELVNVVEE 157

[Close]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match: A0A0B0P4T2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08310 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.1e-56
Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 1 

Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILF 75
           RKPVFVKV+ LKPGT GHTLI KV+SSN VLQKGR+ SQHLRQTRIAECLIGDETGT+LF
Sbjct: 21  RKPVFVKVDHLKPGTKGHTLIAKVLSSNMVLQKGRAASQHLRQTRIAECLIGDETGTVLF 80

Query: 76  TARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLVE 135
           TARNDQV+ +KPG T+ILRNAKIDMFKGSMRLAVDKWGRIEV EP NF+VKEDNNLSLVE
Sbjct: 81  TARNDQVELMKPGNTVILRNAKIDMFKGSMRLAVDKWGRIEVTEPANFIVKEDNNLSLVE 140

Query: 136 YELVNVAEE 145
           YELVNV EE
Sbjct: 141 YELVNVVEE 149

[Close]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 193.7 bits (491), Expect = 7.6e-50
Identity = 99/143 (69.23%), Postives = 113/143 (79.02%), Query Frame = 1 

Query: 3   TEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRI 62
           ++  P   +    +KPVFVKV+QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI
Sbjct: 40  SQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARI 99

Query: 63  AECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPE 122
           +ECL+GDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGRIE  EP 
Sbjct: 100 SECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPA 159

Query: 123 NFVVKEDNNLSLVEYELVNVAEE 145
           +  VKEDNNLSLVEYELVNV EE
Sbjct: 160 DITVKEDNNLSLVEYELVNVVEE 182

[Close]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-49
Identity = 89/134 (66.42%), Postives = 113/134 (84.33%), Query Frame = 1 

Query: 10  ASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDE 69
           ++++GL+KP F KV+QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC++GDE
Sbjct: 4   STKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDE 63

Query: 70  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 129
           TG I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+EV EP +F VKED 
Sbjct: 64  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 123

Query: 130 NLSLVEYELVNVAE 144
           N+SL+EYELVNV E
Sbjct: 124 NMSLIEYELVNVVE 137

[Close]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45
Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 1 

Query: 16  RKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLIGDE 75
           RKPVFVKVEQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 76  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDN 135
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE     +F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 136 NLSLVEYELVNV 142
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 177.2 bits (448), Expect = 7.4e-45
Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 1 

Query: 13  SGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKG--RSVSQHLRQTRIAECLIGDET 72
           S LRKPVF KV +L+PGTNGH+L VKVV++  V+Q+G  R +    RQ RIAECL+GDET
Sbjct: 20  SALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDET 79

Query: 73  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVV-EPENFVVKEDN 132
           G I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+EV  EP +  VK+DN
Sbjct: 80  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 139

Query: 133 NLSLVEYELVNV 142
           NLSL+EYELV+V
Sbjct: 140 NLSLIEYELVSV 151

[Close]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 169.1 bits (427), Expect = 2.0e-42
Identity = 86/135 (63.70%), Postives = 105/135 (77.78%), Query Frame = 1 

Query: 8   TPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTV---LQKGRSVSQHLRQTRIAEC 67
           T A+ +  RKPVFVKV+QLKPGT+GHTLIVKV+ SN V   ++K     Q +   RIAEC
Sbjct: 7   TNATTAPKRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAEC 66

Query: 68  LIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFV 127
           LIGD+TG ILFTARNDQVD +K G T+ILRNAKID+FK +MR+AVD+WGRIE+  P +F 
Sbjct: 67  LIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFE 126

Query: 128 VKEDNNLSLVEYELV 140
           V   NNLSLVEYE++
Sbjct: 127 VNRANNLSLVEYEVI 141

[Close]
BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: gi|659127442|ref|XP_008463705.1| (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo])

HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1 

Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]
BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: gi|449456613|ref|XP_004146043.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 6.5e-67
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1 

Query: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 145
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]
BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: gi|703106206|ref|XP_010098441.1| (hypothetical protein L484_012156 [Morus notabilis])

HSP 1 Score: 232.6 bits (592), Expect = 4.2e-58
Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 1 

Query: 11  SRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDET 70
           ++ GLRKPVF+KV+QLKPGT+GHTL+VKV+SSNTVLQKGRSVS HLRQTRIAECLI DET
Sbjct: 16  AKPGLRKPVFIKVDQLKPGTSGHTLVVKVLSSNTVLQKGRSVSHHLRQTRIAECLISDET 75

Query: 71  GTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNN 130
           GTI+FTARNDQVD +KP TTIILRNAK+DMFKGSMRLAVDKWGR+EV EP  FVVKEDNN
Sbjct: 76  GTIVFTARNDQVDLMKPDTTIILRNAKVDMFKGSMRLAVDKWGRVEVTEPAQFVVKEDNN 135

Query: 131 LSLVEYELVNVAEE 145
           LSLVEYELVNV EE
Sbjct: 136 LSLVEYELVNVVEE 149

[Close]
BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: gi|658029124|ref|XP_008350005.1| (PREDICTED: uncharacterized protein At4g28440-like [Malus domestica])

HSP 1 Score: 229.6 bits (584), Expect = 3.6e-57
Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 1 

Query: 3   TEKSPTPA---SRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQT 62
           T  S TP    ++ GLRKPVF KVE LKP T+GHTL+ KV+SSN VLQKGRSVSQHLRQT
Sbjct: 7   TAPSQTPQQSNAKPGLRKPVFTKVELLKPETSGHTLVAKVLSSNPVLQKGRSVSQHLRQT 66

Query: 63  RIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVE 122
           RI+ECLIGDETGTILFTARNDQVD +KPG T+ILRNA+IDMFKGSMRLAVDKWGRIEV E
Sbjct: 67  RISECLIGDETGTILFTARNDQVDLMKPGATVILRNARIDMFKGSMRLAVDKWGRIEVTE 126

Query: 123 PENFVVKEDNNLSLVEYELVNVAEE 145
           P NFVVKEDNNLSLVEYELVNV EE
Sbjct: 127 PANFVVKEDNNLSLVEYELVNVQEE 151

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BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match: gi|694317951|ref|XP_009340594.1| (PREDICTED: uncharacterized protein At4g28440-like [Pyrus x bretschneideri])

HSP 1 Score: 229.2 bits (583), Expect = 4.6e-57
Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 1 

Query: 3   TEKSPTPA---SRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQT 62
           T  S TP    ++ GLRKPVF KVE LKP T+GHTL+ KV+SSN VLQKGRSVSQHLRQT
Sbjct: 7   TAPSQTPQQSNAKPGLRKPVFTKVELLKPETSGHTLVAKVLSSNPVLQKGRSVSQHLRQT 66

Query: 63  RIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVE 122
           RI+ECLIGDETGTILFTARNDQVD +KPG T+ILRNA+IDMFKGSMRLAVDKWGR+EV E
Sbjct: 67  RISECLIGDETGTILFTARNDQVDLMKPGATVILRNARIDMFKGSMRLAVDKWGRVEVTE 126

Query: 123 PENFVVKEDNNLSLVEYELVNVAEE 145
           P NFVVKEDNNLSLVEYELVNV EE
Sbjct: 127 PANFVVKEDNNLSLVEYELVNVQEE 151

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g06640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4844_ARATH4.5e-4468.94Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1[more]
BLAST of Cp4.1LG06g06640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L242_CUCSA4.5e-6788.31Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629450 PE=4 SV=1[more]
W9R7A6_9ROSA2.9e-5885.07Uncharacterized protein OS=Morus notabilis GN=L484_012156 PE=4 SV=1[more]
M5X2T5_PRUPE4.2e-5784.33Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012670mg PE=4 SV=1[more]
A0A061GM87_THECC7.2e-5787.60Nucleic acid-binding OS=Theobroma cacao GN=TCM_029814 PE=4 SV=1[more]
A0A0B0P4T2_GOSAR2.1e-5686.05Uncharacterized protein OS=Gossypium arboreum GN=F383_08310 PE=4 SV=1[more]
BLAST of Cp4.1LG06g06640 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33845.17.6e-5069.23 Nucleic acid-binding, OB-fold-like protein[more]
AT1G23750.13.8e-4966.42 Nucleic acid-binding, OB-fold-like protein[more]
AT4G28440.12.5e-4568.94 Nucleic acid-binding, OB-fold-like protein[more]
AT1G10590.37.4e-4566.67 Nucleic acid-binding, OB-fold-like protein[more]
AT1G03810.12.0e-4263.70 Nucleic acid-binding, OB-fold-like protein[more]
BLAST of Cp4.1LG06g06640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127442|ref|XP_008463705.1|3.8e-6788.31PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo][more]
gi|449456613|ref|XP_004146043.1|6.5e-6788.31PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus][more]
gi|703106206|ref|XP_010098441.1|4.2e-5885.07hypothetical protein L484_012156 [Morus notabilis][more]
gi|658029124|ref|XP_008350005.1|3.6e-5781.38PREDICTED: uncharacterized protein At4g28440-like [Malus domestica][more]
gi|694317951|ref|XP_009340594.1|4.6e-5780.69PREDICTED: uncharacterized protein At4g28440-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g06640.1Cp4.1LG06g06640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 19..139
score: 3.4
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 12..141
score: 2.86
NoneNo IPR availablePANTHERPTHR31472FAMILY NOT NAMEDcoord: 10..144
score: 2.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g06640Cucsa.122860Cucumber (Gy14) v1cgycpeB0312
Cp4.1LG06g06640CmaCh09G008390Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g06640CmoCh09G008320Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g06640Cla023354Watermelon (97103) v1cpewmB775
Cp4.1LG06g06640Csa4G629450Cucumber (Chinese Long) v2cpecuB783
Cp4.1LG06g06640MELO3C025615Melon (DHL92) v3.5.1cpemeB732
Cp4.1LG06g06640ClCG11G017760Watermelon (Charleston Gray)cpewcgB694
Cp4.1LG06g06640CSPI04G23180Wild cucumber (PI 183967)cpecpiB785
Cp4.1LG06g06640Lsi04G020430Bottle gourd (USVL1VR-Ls)cpelsiB637
Cp4.1LG06g06640MELO3C025615.2Melon (DHL92) v3.6.1cpemedB865
Cp4.1LG06g06640CsaV3_4G033400Cucumber (Chinese Long) v3cpecucB0970
Cp4.1LG06g06640Bhi09G002838Wax gourdcpewgoB1000
Cp4.1LG06g06640CsGy4G021560Cucumber (Gy14) v2cgybcpeB563
Cp4.1LG06g06640Carg17075Silver-seed gourdcarcpeB0245
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g06640Wax gourdcpewgoB0998
Cp4.1LG06g06640Cucurbita pepo (Zucchini)cpecpeB059
Cp4.1LG06g06640Cucurbita pepo (Zucchini)cpecpeB460
Cp4.1LG06g06640Cucurbita pepo (Zucchini)cpecpeB468
Cp4.1LG06g06640Cucumber (Gy14) v1cgycpeB0330
Cp4.1LG06g06640Cucurbita maxima (Rimu)cmacpeB250
Cp4.1LG06g06640Cucurbita maxima (Rimu)cmacpeB503
Cp4.1LG06g06640Cucurbita maxima (Rimu)cmacpeB508
Cp4.1LG06g06640Cucurbita moschata (Rifu)cmocpeB215
Cp4.1LG06g06640Cucurbita moschata (Rifu)cmocpeB461
Cp4.1LG06g06640Cucurbita moschata (Rifu)cmocpeB464
Cp4.1LG06g06640Wild cucumber (PI 183967)cpecpiB771
Cp4.1LG06g06640Cucumber (Chinese Long) v2cpecuB770
Cp4.1LG06g06640Bottle gourd (USVL1VR-Ls)cpelsiB635
Cp4.1LG06g06640Bottle gourd (USVL1VR-Ls)cpelsiB641
Cp4.1LG06g06640Watermelon (Charleston Gray)cpewcgB695
Cp4.1LG06g06640Watermelon (97103) v1cpewmB776
Cp4.1LG06g06640Melon (DHL92) v3.5.1cpemeB709
Cp4.1LG06g06640Silver-seed gourdcarcpeB0434
Cp4.1LG06g06640Silver-seed gourdcarcpeB0947