Cp4.1LG06g06640.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGGTATGAATTTTGAAATCTTCCGTTGCTGTTACGCTTTATGTAGTGTTTTTCATGAATTGAGTAGGGAAAATTAGGTGTTGTTGGATCGCAGGTGGGGAGGCTAAATCAATGATTATGTAGATTGGAATGTTTGAACTATGTGCCCTAGAGCGATTATTAAACAATATGGATTGTGAGATAGGGTTTGGCGGATTACCTACATCTTACCGATGCGCTTAAAGGAACTTGAAACTAGAAATATGCATTGATTTTGCTCTACAAAACGTAATTTCATTATCAGTAGCTTGAACTGGATGCGTTAGAATGGCTAGGAAGAATCAAATCCCTGTGGTTTCCTGTTATTGACCATAATCTGCAGCTTGATAAATGAAGATTTGAACTGAAACTGAAGTGTTTGATGTTAATTTCTCACAAATCCCTAGCCCAATCTGCTTCTAGCTGGTCTGCAAACTATTGCCACTTGAATCTCTAGCTTTGAAATGAAATCTCTGCAATGAACTCATTTATCATGTTGTCTTATATGGTTATTTGTTTGCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA TGTCGCAAAAAAATCAAAGACGAAAGCAGAATGAAGATGCTATATATACACACACCCACCCTGTAACAACCCACGAGTGACAGCACTAGAAAAAGAGGGAGACAGGAGAAAATTTCGATCGATTTACGCGGATTGGGATCAGGATTTGGCGTGCTGCTGATCTTCGGCTTCGGCATCAATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGAATAAGGCCAACTTTATGCATATAATCAATGGACATTGATATCAGTTTCCAGGTAATCTGCTGATGTGAATATATATATAGAACATCGCTATATTATAGTTTTGTATGGGTGAACGAACTGCCCCTTAAGCTCACACACAGTTTTCAATCTGCTGGGCATGTATATTGTATATTCTCGAGTCGTTCTTATCCAACCTGGTTTGTTTATCTTAAAACTTATGGGATCTATTTGATATTTTTGAAATTTAAAGACCGTGATAGCTCAATTGTCTTGATTCGTTGGCTAGTTAACATTTTTGATATTTTATCCTTCGGAGACCTCTGATATAGAGAAGATTAGCATGACCCTTGTGCAAGGATGACATGCACAAATCGAAAAATGGTATAAGAGTCACACATCATGATAGCGAGAACAACACTGGGTCCCAAGGGGAGCGGATTGTGAGGTCCCACTTGGAAAGGGTCTCCTTGGTAGACGCATTTTAAACCCGTGAAGCTGACACCAAAACGGACAATATCTTCTAACAGGCATCTACATGTTAACAATATATGGGTACCAACA ATGGCGACGGAAAAATCACCTACGCCGGCATCGAGATCAGGCTTGAGAAAGCCAGTCTTCGTTAAGGTCGAACAGCTCAAGCCTGGCACTAATGGCCACACACTCATCGTCAAGGTCGTTAGCTCCAATACCGTGCTGCAGAAAGGTCGATCGGTGTCACAGCACCTTCGACAGACGCGGATCGCTGAGTGCCTTATTGGAGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAGGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGATCAATGAGGCTCGCAGTCGATAAATGGGGCCGCATCGAGGTCGTCGAGCCCGAAAATTTCGTCGTCAAGGAAGACAATAATCTATCTTTAGTTGAGTATGAACTTGTGAATGTTGCAGAGGAATGA MATEKSPTPASRSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE
BLAST of Cp4.1LG06g06640.1 vs. Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 4.5e-44 Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TrEMBL
Match: A0A0A0L242_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629450 PE=4 SV=1) HSP 1 Score: 261.9 bits (668), Expect = 4.5e-67 Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TrEMBL
Match: W9R7A6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012156 PE=4 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 2.9e-58 Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TrEMBL
Match: M5X2T5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012670mg PE=4 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 4.2e-57 Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TrEMBL
Match: A0A061GM87_THECC (Nucleic acid-binding OS=Theobroma cacao GN=TCM_029814 PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 7.2e-57 Identity = 113/129 (87.60%), Postives = 120/129 (93.02%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TrEMBL
Match: A0A0B0P4T2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08310 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 2.1e-56 Identity = 111/129 (86.05%), Postives = 119/129 (92.25%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TAIR10
Match: AT2G33845.1 (AT2G33845.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 193.7 bits (491), Expect = 7.6e-50 Identity = 99/143 (69.23%), Postives = 113/143 (79.02%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TAIR10
Match: AT1G23750.1 (AT1G23750.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 191.4 bits (485), Expect = 3.8e-49 Identity = 89/134 (66.42%), Postives = 113/134 (84.33%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TAIR10
Match: AT4G28440.1 (AT4G28440.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 178.7 bits (452), Expect = 2.5e-45 Identity = 91/132 (68.94%), Postives = 105/132 (79.55%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TAIR10
Match: AT1G10590.3 (AT1G10590.3 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 177.2 bits (448), Expect = 7.4e-45 Identity = 88/132 (66.67%), Postives = 108/132 (81.82%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. TAIR10
Match: AT1G03810.1 (AT1G03810.1 Nucleic acid-binding, OB-fold-like protein) HSP 1 Score: 169.1 bits (427), Expect = 2.0e-42 Identity = 86/135 (63.70%), Postives = 105/135 (77.78%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. NCBI nr
Match: gi|659127442|ref|XP_008463705.1| (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]) HSP 1 Score: 262.7 bits (670), Expect = 3.8e-67 Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. NCBI nr
Match: gi|449456613|ref|XP_004146043.1| (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus]) HSP 1 Score: 261.9 bits (668), Expect = 6.5e-67 Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. NCBI nr
Match: gi|703106206|ref|XP_010098441.1| (hypothetical protein L484_012156 [Morus notabilis]) HSP 1 Score: 232.6 bits (592), Expect = 4.2e-58 Identity = 114/134 (85.07%), Postives = 125/134 (93.28%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. NCBI nr
Match: gi|658029124|ref|XP_008350005.1| (PREDICTED: uncharacterized protein At4g28440-like [Malus domestica]) HSP 1 Score: 229.6 bits (584), Expect = 3.6e-57 Identity = 118/145 (81.38%), Postives = 127/145 (87.59%), Query Frame = 1
BLAST of Cp4.1LG06g06640.1 vs. NCBI nr
Match: gi|694317951|ref|XP_009340594.1| (PREDICTED: uncharacterized protein At4g28440-like [Pyrus x bretschneideri]) HSP 1 Score: 229.2 bits (583), Expect = 4.6e-57 Identity = 117/145 (80.69%), Postives = 127/145 (87.59%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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