CsaV3_4G033400 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G033400
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr4 : 23646236 .. 23648869 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCCAAGATTTATAGGTACAATGTTTCATCAAAACATATTGGTTTAGAAAAATGTCACAAAAAGAAAAAAAAAGGCCAAAGAGGAAGAAAGCACAAAGAATGAAGTGAAGAGATGATCGTATTGCTATTGCTATTGCTATATATATAAACACCAATCTCCTAAATTCTCACATTTCACAGCGCCACACACACAGACCTAAATCCGTCGACATAGAAGACAACTTTCGGTCTATTTACTCGGATTCTCATTCAGCTTTCGCATCAATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGGTATGGATTTTTTAATCTTCCACTTCCTGCTGTTTGGTTTCGGGGGGAATTGGGGGAAAATTAGGTTTTTTTTTTTGTTTTTTTAATCTATCGTAGCTGGGGGGGCTAAATCAATGGTTTTTTAGGTTGGGATATTTGAATTATGTACCCTTTAGCGATCATTTTAATGCACTTTTAAACCAATGTTTGGCACAATGATATAATATGAATTCTGAGATGGGTTTTGGAGAATGACGTAGTTCTTGCTGATGTGCTTAAGGAAACTTGGAAGTAGAAACAAGAGGCATCTGTTTTATGAATTGCATAAAGAAGCATTGGTTTTACTCTAATCTGAACTGGATGGGGATTAGAAAGAAATTTACTGTCTTGCACTAGGATTTGTGTTGGGATATGCATGGCTACGAATAATCTAATCCCTTTGTTTTCATGATCTTTATTCATACGCGAGCTTGTTTCGAATTGGAACATTAATTTTTTTAATACTAACTTTATGCTAATGCCCCAAGGGATTAGCATACATTCACAAATACATAGCCTTGTGAAGGGCTTGTGTCTCTTGGTTATAGAGGTTCCAATTTTGATCCTTCGAGTGAGCTTAGTACCAAAAAGTCTTGATGTCTCCAAGGTCCAGGCTCCAAACCTTAGGGCGGGTGCGGGGTGGCCTTGGGTATAGTGAAGAAAGATCCGATTGGTAAGTTGAAGATTTTAACTGAAACTGAAAGTTTGATGTTAAATCCTCACAAATACATAGCCTTGGGTCTGTGAACTGTTGCCACTTGAGTTTTTAGCCTTGAAGTGGAATCTTTGTAAACAAGGAGAATGGGATATTGATATTCATTAGACCGATTTATCATGGTTACCAATACTTGGAAAGCATACTTAAATTTTTTTTATACCTCAGCATTTAAACTTCTCTAAAGTTTTGAATGGGTTATTTTGCTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGATACTACTGGAAGGCCAACTTTAAGTATACAACGGTTTGAGATGGCTGATCAGTGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTATAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATTCCGTCGGTATGACTTACACAAAGCCATGTTTTGTCGGGTAAAGGTATAAATAGGTACTAGTTTGGTACTTTTTACAACTCTGGAAATGTAATAGAGCGTTAGCGACGGCAAAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTTTCAATCTGTTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTGGACAATAACTTGTCCTAGAAGGTGGCTTTACTTTGAGGGCAATAGCAAAAGTCTTTTGGACCAATGTAGACGGTAAACTGTCTCAACTTGTACGAGCATTAGTCTGTGAATTGATCCCTTTAAGTCATACTATTAAAACCTTTTCCATCATTCTAATCTCTTCGTCGAGAGCATATGCCATAACTTGCTGTACATTGGTTGGTCTTCCTGTAAGCTAAGTTTGTTTAGTGATAATCGATTGAACTGCCCTTAGACAGTGGTGGGTTGGGTTGATCCCCACGTCTTCTTCCCCAACCCCCAACCCCCAACCCATTTTTGAACTTGAATTTAATTACATTTGTCTTCTCTCTCAGGAGCGATGGTTATCGTATAGTGTTAGAGAGACACAATTTTGGAAGTTACTAAAGTTGAAATTATATTATTTTACTATTCTATTGAAACACCTTAATCTTATAAATAAAAACAAGCTTTTAGAAAAGCAAAACTTATCTCCTCTCAAAATAGTTTTTGATCTTCAAATAAGTGCTAAACTAACCTATACTATATGACATATCTTTCCCTATGGGTT

mRNA sequence

ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Coding sequence (CDS)

ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE

Homology

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_004146043.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_4G629450 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 6.9e-79
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 1.0e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 5.9e-70
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 7.9e-67
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_022935733.1 (uncharacterized protein At4g28440-like [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 1.0e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 144

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BLAST of CsaV3_4G033400 vs. TAIR10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 97/128 (75.78%), Postives = 107/128 (83.59%), Query Frame = 0


Query: 28  PVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK-GRSVSQHLRQTRIAECLVGDETGTILFT 87
           PVFVK++QLKPGT+GHTL VKVV  N+V QK G + S HLR  RI+ECLVGDET  ILFT
Sbjct: 55  PVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACILFT 114

Query: 88  ARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEY 147
           ARNDQV+ +KPG T+ LRNAKIDMFKGSMRLAVDKWGRIE  +P D  VKEDNNLSLVEY
Sbjct: 115 ARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEY 174

Query: 148 ELVNVAEE 155
           ELVNV EE
Sbjct: 175 ELVNVVEE 182

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BLAST of CsaV3_4G033400 vs. TAIR10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 188.3 bits (477), Expect = 3.4e-48
Identity = 87/132 (65.91%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 22  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETG 81
           + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG
Sbjct: 6   KAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDETG 65

Query: 82  TILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNL 141
            I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+E+ +P  F VKED N+
Sbjct: 66  VIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDTNM 125

Query: 142 SLVEYELVNVAE 154
           SL+EYELVNV E
Sbjct: 126 SLIEYELVNVVE 137

[Close]

BLAST of CsaV3_4G033400 vs. TAIR10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 178.7 bits (452), Expect = 2.7e-45
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 26  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDN 145
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE      F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNV 152
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsaV3_4G033400 vs. TAIR10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 178.3 bits (451), Expect = 3.6e-45
Identity = 87/130 (66.92%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 25  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGT 84
           LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG 
Sbjct: 22  LRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDETGI 81

Query: 85  ILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELA-DPEDFVVKEDNNL 144
           I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  VK+DNNL
Sbjct: 82  IIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNL 141

Query: 145 SLVEYELVNV 152
           SL+EYELV+V
Sbjct: 142 SLIEYELVSV 151

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BLAST of CsaV3_4G033400 vs. TAIR10
Match: AT1G03810.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.3e-42
Identity = 86/136 (63.24%), Postives = 104/136 (76.47%), Query Frame = 0


Query: 17  TNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTV---LQKGRSVSQHLRQTRIAE 76
           TNA   P  RKPVFVK++QLKPGT+GHTLIVKV+ SN V   ++K     Q +   RIAE
Sbjct: 7   TNATTAP-KRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAE 66

Query: 77  CLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDF 136
           CL+GD+TG ILFTARNDQVD +K G T+ILRNAKID+FK +MR+AVD+WGRIE+  P  F
Sbjct: 67  CLIGDDTGCILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSF 126

Query: 137 VVKEDNNLSLVEYELV 150
            V   NNLSLVEYE++
Sbjct: 127 EVNRANNLSLVEYEVI 141

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BLAST of CsaV3_4G033400 vs. Swiss-Prot
Match: sp|O49453|Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.9e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 26  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDN 145
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE      F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNV 152
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

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BLAST of CsaV3_4G033400 vs. TrEMBL
Match: tr|A0A0A0L242|A0A0A0L242_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 4.6e-79
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. TrEMBL
Match: tr|A0A1S3CKC4|A0A1S3CKC4_CUCME (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 6.6e-78
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. TrEMBL
Match: tr|A0A2P5AR41|A0A2P5AR41_PARAD (Nucleic acid-binding, OB-fold containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_308280 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 8.7e-62
Identity = 121/145 (83.45%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 10  ASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQT 69
           A++E QQ+N   +PGLRKPVF K++QLKPGT GHTL+VKV+SSNTVLQKGRSVSQHLRQT
Sbjct: 4   AAEESQQSN--KKPGLRKPVFTKVDQLKPGTGGHTLVVKVLSSNTVLQKGRSVSQHLRQT 63

Query: 70  RIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELAD 129
           RIAECLVGDETGTILFTARNDQVD +KPGTTIILRNAKIDMFKGSMRLAVDKWGR+E+ +
Sbjct: 64  RIAECLVGDETGTILFTARNDQVDLMKPGTTIILRNAKIDMFKGSMRLAVDKWGRVEVTE 123

Query: 130 PEDFVVKEDNNLSLVEYELVNVAEE 155
           P  F+VKEDNNLSLVEYELVNV EE
Sbjct: 124 PAQFIVKEDNNLSLVEYELVNVVEE 146

[Close]

BLAST of CsaV3_4G033400 vs. TrEMBL
Match: tr|A0A2P5F4N9|A0A2P5F4N9_9ROSA (Nucleic acid-binding, OB-fold containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_113680 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-60
Identity = 124/154 (80.52%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT  +   A  E QQ+NA  +PGLRKPVF K++QLKPGT GHTL+VKV+SSNTV QKGR
Sbjct: 1   MATAAAAEAA--ESQQSNA--KPGLRKPVFTKVDQLKPGTGGHTLVVKVLSSNTVSQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           S SQHLRQTRIAECLVGDETGTILFTARNDQVD +KPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SASQHLRQTRIAECLVGDETGTILFTARNDQVDLMKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGR+E+ +P  FVVKEDNNLSLVEYELVNV EE
Sbjct: 121 KWGRVEVTEPAQFVVKEDNNLSLVEYELVNVVEE 150

[Close]

BLAST of CsaV3_4G033400 vs. TrEMBL
Match: tr|A0A218XUL2|A0A218XUL2_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr002401 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 8.1e-60
Identity = 114/149 (76.51%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 6   SPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQH 65
           +P  + QE Q T +  +PGLRKPVF K++QL+PGT+GHTLI KV+SSNTVLQKGRSVSQH
Sbjct: 4   APPQSEQEQQPTQSNEKPGLRKPVFTKVDQLRPGTSGHTLIAKVLSSNTVLQKGRSVSQH 63

Query: 66  LRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRI 125
           LR TRIAECL+GDETGTI+FTARNDQVD ++PG T+ILRNAKIDMFKGSMRLAVDKWGR+
Sbjct: 64  LRHTRIAECLIGDETGTIVFTARNDQVDLMQPGATVILRNAKIDMFKGSMRLAVDKWGRV 123

Query: 126 ELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           E  DP DF VKEDNNLSL+EYELVNV +E
Sbjct: 124 EATDPADFTVKEDNNLSLIEYELVNVVDE 152

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146043.1	6.9e-79	100.00	PREDICTED: uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypot...	[more]
XP_008463705.1	1.0e-77	98.70	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo]	[more]
XP_022139613.1	5.9e-70	89.61	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	7.9e-67	88.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935733.1	1.0e-66	87.66	uncharacterized protein At4g28440-like [Cucurbita moschata]	[more]

BLAST of CsaV3_4G033400 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G33845.1	1.1e-49	75.78	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	3.4e-48	65.91	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	2.7e-45	67.42	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	3.6e-45	66.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G03810.1	1.3e-42	63.24	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CsaV3_4G033400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49453\|Y4844_ARATH	4.9e-44	67.42	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CsaV3_4G033400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L242\|A0A0A0L242_CUCSA	4.6e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]
tr\|A0A1S3CKC4\|A0A1S3CKC4_CUCME	6.6e-78	98.70	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
tr\|A0A2P5AR41\|A0A2P5AR41_PARAD	8.7e-62	83.45	Nucleic acid-binding, OB-fold containing protein OS=Parasponia andersonii OX=347...	[more]
tr\|A0A2P5F4N9\|A0A2P5F4N9_9ROSA	2.1e-60	80.52	Nucleic acid-binding, OB-fold containing protein OS=Trema orientalis OX=63057 GN...	[more]
tr\|A0A218XUL2\|A0A218XUL2_PUNGR	8.1e-60	76.51	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr002401 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012340	NA-bd_OB-fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033400.1	CsaV3_4G033400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.40.50.140		coord: 40..143 e-value: 7.1E-39 score: 134.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR31472	FAMILY NOT NAMED	coord: 12..154
None	No IPR available	PANTHER	PTHR31472:SF1	EXPRESSED PROTEIN-RELATED	coord: 12..154
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 44..127 e-value: 5.96216E-18 score: 73.4261
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	coord: 24..151

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G033400	CSPI04G23180	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G033400	Cucsa.122860	Cucumber (Gy14) v1	cgycucB167
CsaV3_4G033400	CmaCh09G008390	Cucurbita maxima (Rimu)	cmacucB0028
CsaV3_4G033400	CmoCh09G008320	Cucurbita moschata (Rifu)	cmocucB0016
CsaV3_4G033400	Cp4.1LG06g06640	Cucurbita pepo (Zucchini)	cpecucB0970
CsaV3_4G033400	CsGy4G021560	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G033400	Carg17075	Silver-seed gourd	carcucB0194
CsaV3_4G033400	Cla023354	Watermelon (97103) v1	cucwmB367
CsaV3_4G033400	MELO3C025615	Melon (DHL92) v3.5.1	cucmeB299
CsaV3_4G033400	ClCG11G017760	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G033400	Lsi04G020430	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G033400	MELO3C025615.2	Melon (DHL92) v3.6.1	cucmedB291
CsaV3_4G033400	Cla97C11G223790	Watermelon (97103) v2	cucwmbB281
CsaV3_4G033400	Bhi09G002838	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G033400	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_4G033400	Silver-seed gourd	carcucB0196
CsaV3_4G033400	Silver-seed gourd	carcucB0344
CsaV3_4G033400	Silver-seed gourd	carcucB0690
CsaV3_4G033400	Cucumber (Gy14) v2	cgybcucB034
CsaV3_4G033400	Cucurbita maxima (Rimu)	cmacucB0034
CsaV3_4G033400	Cucurbita maxima (Rimu)	cmacucB0258
CsaV3_4G033400	Cucurbita maxima (Rimu)	cmacucB0396
CsaV3_4G033400	Cucurbita maxima (Rimu)	cmacucB0566
CsaV3_4G033400	Cucurbita moschata (Rifu)	cmocucB0022
CsaV3_4G033400	Cucurbita moschata (Rifu)	cmocucB0246
CsaV3_4G033400	Cucurbita moschata (Rifu)	cmocucB0393
CsaV3_4G033400	Cucurbita moschata (Rifu)	cmocucB0552
CsaV3_4G033400	Cucurbita pepo (Zucchini)	cpecucB0270
CsaV3_4G033400	Cucurbita pepo (Zucchini)	cpecucB0702
CsaV3_4G033400	Cucurbita pepo (Zucchini)	cpecucB0976
CsaV3_4G033400	Wild cucumber (PI 183967)	cpicucB039
CsaV3_4G033400	Bottle gourd (USVL1VR-Ls)	cuclsiB291