Cp4.1LG06g02240 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g02240
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionZinc finger CCCH domain-containing protein
LocationCp4.1LG06 : 1226770 .. 1227828 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATACCATCGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGGCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTCAAATTCCTAA

mRNA sequence

ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATACCATCGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGGCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTCAAATTCCTAA

Coding sequence (CDS)

ATGATCGGCGAACAATCTAGATTCACTCATACCATTCAAGTTCCCCCCTGGGACCCACACGAAGACCACCATACCATCGGAATTTCCTCGCCGGTCTTCATTCCCGGTGGGCTCGACTCATTTATCGACTCCTTTTCCGCCATTCACCGTTATCTACCCTCGGCGGCGGATTCCACCGCGGCGGAAGAAGCGGTGGATGGATTTTCCTGCGACCATTTCCGTATGTTCGAGTTCAAAATCCGGAGATGTGCACGTGGGAGATCGCACGATTGGACAGAGTGTCCGTACGCCCATCCCGGCGAGAAGGCACGCCGACGAGATCCGAGGAAGTATCATTACTCCGGCACGGCCTGTCCCGAGTTTCGGAAAGGAAATTGCAAAAAAGGGGATTCTTGCGATCTCGCTCATGGGATTTTCGAGTGTTGGCTCCATCCAGCTCGGTATAGGACTCAGCCTTGTAAAGACGGACTGGCCTGCCGCCGCCGTGTCTGTTTTTTCGCCCATTTGCCGGAACAGCTCCGGGTTCTGCCACAGCAGAGCCCGAGAACTCCGGTTTCGGCCGATTCAGTAGATGGGTCCCCTCGAATTTCACTCGCATTCGATTCCTATTTCGCCAAAGGCTCACTTGTGACCTCACCCACTTCAATTATATCAATGCCGCCGGTCTCTCCACCGTCGGATTCTCCCCCTCTGTCGCCGAATTGCCCCCAACTCGGCGGTGGGTCATTCAATTCAATGACTAAACTGGCTTCGTCTCATCTTAAAATAGGGAAATCAAAGGCAACCCCTCATTGGGGGATTCAATTAGGACAAAATCTGCTCTCTCCCTCCGGCTCTGGTTTCTACAGTCTACCGTCAACTCCGACGACCGGAAAGTACGAATTGTGGGGGAAGAATTACGAGGAAGAACCCGCAATGGAGAGAGTGGAATCAGGGAGAGACCTGAGAGCCAAAATGTACGCAAAACTCAGCAAAGACAACTCCGTGAAAGAGGCGGCGGATTCGACGTCGACACCCGATGTCGGATGGGTCTCGGAGCTATTAATGTCAAATTCCTAA

Protein sequence

MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGSGFYSLPSTPTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLMSNS
Homology
[Close]
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match: C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.9e-91
Identity = 191/372 (51.34%), Postives = 234/372 (62.90%), Query Frame = 1 

Query: 1   MIGEQSR-FTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAA--- 60
           MIGE  R F  T+ +PPW   ED   + +S     P G  S +++ + + RYLPS     
Sbjct: 2   MIGESHRGFNPTVHIPPWPLSED---LTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDP 61

Query: 61  ----DSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYH 120
               D +  +  +D ++CDHFRM+EFK+RRCARGRSHDWTECPYAHPGEKARRRDPRK+H
Sbjct: 62  DSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 121

Query: 121 YSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQ 180
           YSGTACPEFRKG CK+GD+C+ +HG+FECWLHPARYRTQPCKDG  CRRRVCFFAH P+Q
Sbjct: 122 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 181

Query: 181 LRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDS-PPL 240
           +RVLP QSP    S D +  SP I  AF           SP+S  + PPVSP  DS    
Sbjct: 182 IRVLPNQSPDRVDSFDVL--SPTIRRAF-------QFSISPSS--NSPPVSPRGDSDSSC 241

Query: 241 SPNCPQLGGGSFNS-MTKLASSHLKIGKSKATPHWGIQL---GQNLLSPSGS----GFYS 300
           S     LG    N  +  L +  L   KS  +  +  Q+   G    SP GS    GF S
Sbjct: 242 SLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRS 301

Query: 301 LPSTPT-TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEA-----ADSTS 350
           LP+TPT  G   +W    EEEPAMERVESGR+LRA+++ KLSK+N +          +  
Sbjct: 302 LPTTPTRPGFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGD 359

[Close]
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match: C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 6.2e-87
Identity = 187/371 (50.40%), Postives = 224/371 (60.38%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAA---- 60
           MIGE  R   T+++PPW   E+  T    SPV       S +++ + + RYLPS      
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTSEFFSPVMNSPDC-SMLEALAGLQRYLPSNEPDPE 61

Query: 61  ---DSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 120
              D    +  +D +SCDHFRM++FK+RRCARGRSHDWTECPYAHPGEKARRRDPRKYHY
Sbjct: 62  SYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 121

Query: 121 SGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQL 180
           SGTACP+FRKG CKKGDSC+ AHG+FECWLHPARYRTQPCKDG  C R++CFFAH P+QL
Sbjct: 122 SGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQL 181

Query: 181 RVLPQQSPRTPVSADSVD-GSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSD---SP 240
           R L     R+P   DS D  SP  + AF        L  SP S    PP+SP +D   SP
Sbjct: 182 RFL---HTRSPDRVDSFDVSSPIRARAF-------QLSISPVS--GSPPMSPRADSESSP 241

Query: 241 PLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGS----GFYSLP 300
                   LG  S N +   +  +L+    K+ P      G    SP GS    GF SLP
Sbjct: 242 MTQSLSRSLGSCSINDVVP-SFRNLQFNSVKSFPRNNPLFGFG--SPRGSILGPGFQSLP 301

Query: 301 STPT-TGKYELWGKNYEEEPAMER-VESGRDLRAKMYAKLSKDNSVKEAADST-----ST 350
           +TPT  G  ++W    EEEP MER VESGR+LR KM  KL K+N +   A          
Sbjct: 302 TTPTRPGNLDIWEYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNLGEA 356

[Close]
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match: C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.8e-86
Identity = 186/395 (47.09%), Postives = 233/395 (58.99%), Query Frame = 1 

Query: 15  PPWDPHEDHHTIGISSPVFIPGGLDSFIDS-----FSAIHRYLPSAADSTAAEE------ 74
           PPW  H      G+       GG +S + +        +  YLPS   + A +E      
Sbjct: 11  PPWQQHVASPVSGVEGG----GGRESEVVAAPYHLLDTLRHYLPSNEAAAAEDEEEAAAV 70

Query: 75  --AVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEF 134
             AVD ++CD FRM+EFK+RRCARGRSHDWTECP+AHPGEKARRRDPR+Y YSGTACP+F
Sbjct: 71  AAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDF 130

Query: 135 RKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLP---Q 194
           RKG CK+GD+C+ AHG+FECWLHPARYRTQPCKDG ACRRRVCFFAH P+QLRVLP   Q
Sbjct: 131 RKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQ 190

Query: 195 QSPRTPVS-------------ADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPP 254
           Q   +P               A+S DGSP    AF+SY  K  + +SPTS +  PP SPP
Sbjct: 191 QGSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSPPRSPP 250

Query: 255 SDSPPLSPNC-------PQLGGGSFNSMTKLASSHLKIGKSKATPHW------GIQLG-- 314
           S+SPPLSP+           G GS  +   ++   L++G  ++ P        G Q G  
Sbjct: 251 SESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSP 310

Query: 315 QNLLSPSGSGFYSLPSTPT-------------TGKYELWGKN-YEEEPAMERVESGRDLR 349
           ++  + + +  YSLPSTPT             T   E       EEE  MERVESGR LR
Sbjct: 311 KSPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDLGLIEEEQPMERVESGRALR 370

[Close]
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match: C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 4.0e-86
Identity = 184/379 (48.55%), Postives = 233/379 (61.48%), Query Frame = 1 

Query: 14  VPPWD--PHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTAAEE-------- 73
           VPPW   P      +G        GG +      +A+  YLP+      A+E        
Sbjct: 11  VPPWSHLPVSGVDVLGGGGG----GGDEMTPYVIAALRDYLPANDVGVGADEEEEAAAMA 70

Query: 74  -AVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFR 133
            AVD ++CD FRM+EFK+RRCARGRSHDWTECP+AHPGEKARRRDPRKYHYSGTACP+FR
Sbjct: 71  AAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFR 130

Query: 134 KGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLP--QQS 193
           KG CK+GD+C+ AHG+FECWLHPARYRTQPCKDG ACRRRVCFFAH P+QLRVLP  Q S
Sbjct: 131 KGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSS 190

Query: 194 PRTPVS---ADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQ 253
           PR+  S   A+S DGSP    AF+SY  K  + +SPTS +  PP SPPS+SPPLSP+   
Sbjct: 191 PRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAA 250

Query: 254 L-------GGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLL---SP-SGSGFYSLPS 313
                   G GS  +    +   L++ K K++P  G     +     SP + +G YSLP+
Sbjct: 251 AIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPT 310

Query: 314 TP-----TTGKYELWGKNYE--------EEPAMERVESGRDLRAKMYAKLSKDNSVKEAA 349
           TP     T      +  N E        +E  ++RVESGR LR K++ +LS+D ++   A
Sbjct: 311 TPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAISGDA 370

[Close]
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 7.8e-82
Identity = 172/349 (49.28%), Postives = 216/349 (61.89%), Query Frame = 1 

Query: 1   MIGEQSRFTH-TIQVPPWDPHEDHHTIGISSPVF---------IPGGLDSFIDSFSAIHR 60
           MIGE     H TI +P WD   D  T  ISSP            P     ++DSF+++ R
Sbjct: 2   MIGENKNRPHPTIHIPQWDQINDP-TATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFR 61

Query: 61  YLPSA-----ADSTAAEEA---VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEK 120
           YLPS      +DS++ +E+    D FS D FR++EFKIRRCARGRSHDWTECP+AHPGEK
Sbjct: 62  YLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEK 121

Query: 121 ARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRR 180
           ARRRDPRK+HYSGTACPEFRKG+C++GDSC+ +HG+FECWLHP+RYRTQPCKDG +CRRR
Sbjct: 122 ARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRR 181

Query: 181 VCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPV 240
           +CFFAH  EQLRVLP                   SL  D  F  G L TSPTSI+  P  
Sbjct: 182 ICFFAHTTEQLRVLP------------------CSLDPDLGFFSG-LATSPTSILVSPSF 241

Query: 241 SPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGSGFY 300
           SPPS+SPPLSP           S  +L +S  K+  +     W   +   +  P  S   
Sbjct: 242 SPPSESPPLSP-----------STGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLR 301

Query: 301 SLPST--PTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSV 330
            + +   P   ++E+     EE PAME VESG++LRA+MYA+LS++NS+
Sbjct: 302 PIQAATWPRIREFEI-----EEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match: A5BHR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036981 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 5.5e-127
Identity = 239/381 (62.73%), Postives = 281/381 (73.75%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPG-------------GLDSFI--DSF 60
           MIGE +R   T+QVPPWDP++D  T G+ SP  + G               + FI  ++F
Sbjct: 49  MIGEPTRSNPTVQVPPWDPYDDP-TAGMGSPFPVSGVNFNGNAASPTGGDYNPFIISEAF 108

Query: 61  SAIHRYLPSAADSTAA----EEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGE 120
           S++ RYLPS    T +    E  VD FSCD FRMFEFK+RRCARGRSHDWTECPYAHPGE
Sbjct: 109 SSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGE 168

Query: 121 KARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRR 180
           KARRRDPRK+HYSGTACPEFRKGNCKKGDSC+ AHG+FECWLHPARYRTQPCKDG  CRR
Sbjct: 169 KARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRR 228

Query: 181 RVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPP 240
           RVCFFAH PEQLRVLPQQSPR   SA+S DGSP + LAFD Y +KGS ++SPTS +  PP
Sbjct: 229 RVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSP-LRLAFDPYLSKGSFISSPTSTLISPP 288

Query: 241 VSPPSDSPPLSPNCPQLGGGSFNSMTKLASS--HLKIGKSKATPH-WGIQLGQNLLSPSG 300
           VSPPSDSPP+SPN P    GSFNSM++L +S  +L++GK+K +P  WG+Q+G    SP G
Sbjct: 289 VSPPSDSPPMSPNSPSF-TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRG 348

Query: 301 S----GFYSLPSTPT-------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDN 349
           S    GF SLPSTPT        G  ++W K  EEEPAMERVESGRDLRA++YAK+SK+N
Sbjct: 349 STLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKEN 408

[Close]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match: F6H381_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00610 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 5.5e-127
Identity = 239/381 (62.73%), Postives = 281/381 (73.75%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPG-------------GLDSFI--DSF 60
           MIGE +R   T+QVPPWDP++D  T G+ SP  + G               + FI  ++F
Sbjct: 2   MIGEPTRSNPTVQVPPWDPYDDP-TAGMGSPFPVSGVNFNGNAASPTGGDYNPFIISEAF 61

Query: 61  SAIHRYLPSAADSTAA----EEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGE 120
           S++ RYLPS    T +    E  VD FSCD FRMFEFK+RRCARGRSHDWTECPYAHPGE
Sbjct: 62  SSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGE 121

Query: 121 KARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRR 180
           KARRRDPRK+HYSGTACPEFRKGNCKKGDSC+ AHG+FECWLHPARYRTQPCKDG  CRR
Sbjct: 122 KARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRR 181

Query: 181 RVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPP 240
           RVCFFAH PEQLRVLPQQSPR   SA+S DGSP + LAFD Y +KGS ++SPTS +  PP
Sbjct: 182 RVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSP-LRLAFDPYLSKGSFISSPTSTLISPP 241

Query: 241 VSPPSDSPPLSPNCPQLGGGSFNSMTKLASS--HLKIGKSKATPH-WGIQLGQNLLSPSG 300
           VSPPSDSPP+SPN P    GSFNSM++L +S  +L++GK+K +P  WG+Q+G    SP G
Sbjct: 242 VSPPSDSPPMSPNSPSF-TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRG 301

Query: 301 S----GFYSLPSTPT-------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDN 349
           S    GF SLPSTPT        G  ++W K  EEEPAMERVESGRDLRA++YAK+SK+N
Sbjct: 302 STLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKEN 361

[Close]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match: A0A067KDD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07708 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.4e-122
Identity = 229/370 (61.89%), Postives = 275/370 (74.32%), Query Frame = 1 

Query: 1   MIGEQSRFTH-TIQVPPWDPHEDHHTIGISSPVFIPGGLDS-FIDSFSAIHRYLPSAADS 60
           MIGE    ++ T+Q+PPWDP  D  T  + SP    G   S F+DS +A+HRYLPS    
Sbjct: 2   MIGEPPTHSNPTVQIPPWDPFFDEPTSPLPSPFANCGNTSSPFLDSLTALHRYLPSNEPD 61

Query: 61  TAAEE---AVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSG 120
           + +++   AVD FSCDHFRM+EFK+RRCARGRSHDWTECPYAHPGEKARRRDPR+YHYSG
Sbjct: 62  SLSDDLDFAVDAFSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRRYHYSG 121

Query: 121 TACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRV 180
           TACP+FRKG CKKGDSC+ AHG+FECWLHPARYRTQPCKDG ACRRRVCFFAH P+QLRV
Sbjct: 122 TACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHTPDQLRV 181

Query: 181 LPQQSPR--TPVSADSVDGSPRISLAFDSYFAK-GSLVTSPTSIISMPPVSPPSDSPPLS 240
           LPQQSPR   P S +   GSP +    DSY +K GS ++SPTSI++ PP+SPPSDSPP+S
Sbjct: 182 LPQQSPRGNAPGSVEMEVGSP-LRHHIDSYLSKAGSFLSSPTSILTSPPMSPPSDSPPIS 241

Query: 241 PNCPQLGGGSFNSMTKLASS--HLKIGKSKA-TPHWGIQLGQNLLSPSGS----GFYSLP 300
           P+ PQ+ GGSFNS+++L +S   L+  K KA +  WG+Q G    SP GS     F SLP
Sbjct: 242 PSSPQVVGGSFNSVSELVASMRSLQFSKMKAGSASWGMQNGSGFGSPRGSSLRPSFCSLP 301

Query: 301 STPT-------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTST 349
           STPT        G+ +LW    EEEP MERVESG+DLRAK+YAKLSK+NS+  +  + S 
Sbjct: 302 STPTRAMTRAGLGQVDLWDSTLEEEPVMERVESGKDLRAKIYAKLSKENSLNRSDSAASA 361

[Close]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match: B9HE04_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s25080g PE=4 SV=2)

HSP 1 Score: 421.0 bits (1081), Expect = 1.4e-114
Identity = 235/391 (60.10%), Postives = 274/391 (70.08%), Query Frame = 1 

Query: 1   MIGEQS--RFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSF-----IDSFSAIHRYLP 60
           MIGE S  R   T+Q+P WDP+E+  T   +SP   P     F     +DS +++HRYLP
Sbjct: 3   MIGELSHHRSNPTVQIPQWDPYEEQTT---TSPSLSPIPTSPFTNFNALDSLTSLHRYLP 62

Query: 61  S-AADSTAAEEA---VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPR 120
           S   D T  +E    VD FSCDHFRM+EFK++RCARGRSHDWTECPYAHPGEKARRRDPR
Sbjct: 63  SNEPDPTFEDELDLPVDAFSCDHFRMYEFKVKRCARGRSHDWTECPYAHPGEKARRRDPR 122

Query: 121 KYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHL 180
           +YHYSGTACPEFRKG CKKGD+C+ AHG+FECWLHPARYRTQPCKDG ACRRRVCFFAH 
Sbjct: 123 RYHYSGTACPEFRKGGCKKGDACEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHT 182

Query: 181 PEQLRVLPQQSPRTPVSADSVD------GSPRISLAFDSYFAK-GSLVTSPTSIISMPPV 240
           PEQLR+LPQQSP+   S   +       GSP I   FDSY  K G  V+SPTSI++ PPV
Sbjct: 183 PEQLRLLPQQSPKGNGSGSGLGSGEYDFGSPVIH-PFDSYMTKAGIFVSSPTSILTSPPV 242

Query: 241 SPPSDSPPLSPNCPQL----GGGSFNSMTKLASS--HLKIGKSK---ATPHWGIQLGQNL 300
           SPPSDSPP+SP  PQ+    G GS NSM+ L +S   L++GK+K       WG+Q G   
Sbjct: 243 SPPSDSPPMSPVSPQVIGGSGPGSLNSMSALLASMRGLQVGKAKMGSPVGSWGVQSGFRF 302

Query: 301 LSPSGS----GFYSLPSTPT--------TGKYELWGKNY--EEEPAMERVESGRDLRAKM 349
            SP GS    GF SLPSTPT          + ++WG     EEEPAMERVESGRDLRAK+
Sbjct: 303 GSPRGSSLRPGFCSLPSTPTRTMASRSGLSQLDIWGDGVTCEEEPAMERVESGRDLRAKI 362

[Close]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match: A9P9A8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 7.0e-114
Identity = 227/384 (59.11%), Postives = 266/384 (69.27%), Query Frame = 1 

Query: 1   MIGEQSRF--THTIQVPPWDPHEDHHTIGISSPVFIPGG-LDSF--IDSFSAIHRYLPSA 60
           MIGE        T+Q+P WDP++D  T    SP  IP     +F  +DS +A+HRYLPS 
Sbjct: 2   MIGEHPHHHPNPTVQIPQWDPYDDQTTS--PSPSTIPSSPFTNFNALDSLTALHRYLPSN 61

Query: 61  ADSTAAEEA----VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKY 120
               + E+     VD FSCDHFRM+ FK+RRC RGRSHDWTECPYAHPGEKARRRDP++Y
Sbjct: 62  EPDPSFEDELDLPVDAFSCDHFRMYVFKVRRCGRGRSHDWTECPYAHPGEKARRRDPQRY 121

Query: 121 HYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPE 180
           HYSGTACPEFRKG CKKGDSC+ AHG+FECWLHPARYRTQPCKDG ACRRRVCFFAH PE
Sbjct: 122 HYSGTACPEFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGPACRRRVCFFAHTPE 181

Query: 181 QLRVLPQQSPRTPVSAD-SVDGSPRISLAFDSYFAK-GSLVTSPTSIISMPPVSPPSDSP 240
           QLR+LPQ SP+   S    +D    +    DSY  K GS V+SPTSI++ PPVSPPSDSP
Sbjct: 182 QLRLLPQHSPKGNGSGSWELDFGSLVMHPLDSYLTKAGSFVSSPTSILTSPPVSPPSDSP 241

Query: 241 PLSPNCPQL----GGGSFNSMTKLASS--HLKIGKSK---ATPHWGIQLGQNLLSPSGS- 300
           P+SP  PQ+    G GSFNSM++L +S   L++GK K       WG+Q G    SP GS 
Sbjct: 242 PMSPVSPQVIGGSGSGSFNSMSELLASMRGLQLGKMKIGSPVGSWGVQSGSRFGSPRGSS 301

Query: 301 ---GFYSLPSTPT--------TGKYELWG--KNYEEEPAMERVESGRDLRAKMYAKLSKD 349
              GF SLPSTPT         G+ ++WG     EEEPAMERVESGRDLRAK+YAKLSK+
Sbjct: 302 LRPGFCSLPSTPTRTMVTRSGLGQLDIWGDSSTCEEEPAMERVESGRDLRAKIYAKLSKE 361

[Close]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match: AT2G19810.1 (AT2G19810.1 CCCH-type zinc finger family protein)

HSP 1 Score: 337.4 bits (864), Expect = 1.0e-92
Identity = 191/372 (51.34%), Postives = 234/372 (62.90%), Query Frame = 1 

Query: 1   MIGEQSR-FTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAA--- 60
           MIGE  R F  T+ +PPW   ED   + +S     P G  S +++ + + RYLPS     
Sbjct: 2   MIGESHRGFNPTVHIPPWPLSED---LTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDP 61

Query: 61  ----DSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYH 120
               D +  +  +D ++CDHFRM+EFK+RRCARGRSHDWTECPYAHPGEKARRRDPRK+H
Sbjct: 62  DSDPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFH 121

Query: 121 YSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQ 180
           YSGTACPEFRKG CK+GD+C+ +HG+FECWLHPARYRTQPCKDG  CRRRVCFFAH P+Q
Sbjct: 122 YSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQ 181

Query: 181 LRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDS-PPL 240
           +RVLP QSP    S D +  SP I  AF           SP+S  + PPVSP  DS    
Sbjct: 182 IRVLPNQSPDRVDSFDVL--SPTIRRAF-------QFSISPSS--NSPPVSPRGDSDSSC 241

Query: 241 SPNCPQLGGGSFNS-MTKLASSHLKIGKSKATPHWGIQL---GQNLLSPSGS----GFYS 300
           S     LG    N  +  L +  L   KS  +  +  Q+   G    SP GS    GF S
Sbjct: 242 SLLSRSLGSNLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRS 301

Query: 301 LPSTPT-TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEA-----ADSTS 350
           LP+TPT  G   +W    EEEPAMERVESGR+LRA+++ KLSK+N +          +  
Sbjct: 302 LPTTPTRPGFMNIWENGLEEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGD 359

[Close]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match: AT4G29190.1 (AT4G29190.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 322.4 bits (825), Expect = 3.5e-88
Identity = 187/371 (50.40%), Postives = 224/371 (60.38%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAA---- 60
           MIGE  R   T+++PPW   E+  T    SPV       S +++ + + RYLPS      
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEELTTSEFFSPVMNSPDC-SMLEALAGLQRYLPSNEPDPE 61

Query: 61  ---DSTAAEEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 120
              D    +  +D +SCDHFRM++FK+RRCARGRSHDWTECPYAHPGEKARRRDPRKYHY
Sbjct: 62  SYPDLLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHY 121

Query: 121 SGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQL 180
           SGTACP+FRKG CKKGDSC+ AHG+FECWLHPARYRTQPCKDG  C R++CFFAH P+QL
Sbjct: 122 SGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQL 181

Query: 181 RVLPQQSPRTPVSADSVD-GSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSD---SP 240
           R L     R+P   DS D  SP  + AF        L  SP S    PP+SP +D   SP
Sbjct: 182 RFL---HTRSPDRVDSFDVSSPIRARAF-------QLSISPVS--GSPPMSPRADSESSP 241

Query: 241 PLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGS----GFYSLP 300
                   LG  S N +   +  +L+    K+ P      G    SP GS    GF SLP
Sbjct: 242 MTQSLSRSLGSCSINDVVP-SFRNLQFNSVKSFPRNNPLFGFG--SPRGSILGPGFQSLP 301

Query: 301 STPT-TGKYELWGKNYEEEPAMER-VESGRDLRAKMYAKLSKDNSVKEAADST-----ST 350
           +TPT  G  ++W    EEEP MER VESGR+LR KM  KL K+N +   A          
Sbjct: 302 TTPTRPGNLDIWEYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNLGEA 356

[Close]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match: AT2G25900.1 (AT2G25900.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 305.4 bits (781), Expect = 4.4e-83
Identity = 172/349 (49.28%), Postives = 216/349 (61.89%), Query Frame = 1 

Query: 1   MIGEQSRFTH-TIQVPPWDPHEDHHTIGISSPVF---------IPGGLDSFIDSFSAIHR 60
           MIGE     H TI +P WD   D  T  ISSP            P     ++DSF+++ R
Sbjct: 2   MIGENKNRPHPTIHIPQWDQINDP-TATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFR 61

Query: 61  YLPSA-----ADSTAAEEA---VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEK 120
           YLPS      +DS++ +E+    D FS D FR++EFKIRRCARGRSHDWTECP+AHPGEK
Sbjct: 62  YLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEK 121

Query: 121 ARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRR 180
           ARRRDPRK+HYSGTACPEFRKG+C++GDSC+ +HG+FECWLHP+RYRTQPCKDG +CRRR
Sbjct: 122 ARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRR 181

Query: 181 VCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPV 240
           +CFFAH  EQLRVLP                   SL  D  F  G L TSPTSI+  P  
Sbjct: 182 ICFFAHTTEQLRVLP------------------CSLDPDLGFFSG-LATSPTSILVSPSF 241

Query: 241 SPPSDSPPLSPNCPQLGGGSFNSMTKLASSHLKIGKSKATPHWGIQLGQNLLSPSGSGFY 300
           SPPS+SPPLSP           S  +L +S  K+  +     W   +   +  P  S   
Sbjct: 242 SPPSESPPLSP-----------STGELIASMRKMQLNGGGCSWSSPMRSAVRLPFSSSLR 301

Query: 301 SLPST--PTTGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSV 330
            + +   P   ++E+     EE PAME VESG++LRA+MYA+LS++NS+
Sbjct: 302 PIQAATWPRIREFEI-----EEAPAMEFVESGKELRAEMYARLSRENSL 314

[Close]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match: AT5G44260.1 (AT5G44260.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-52
Identity = 99/175 (56.57%), Postives = 122/175 (69.71%), Query Frame = 1 

Query: 63  EAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEF- 122
           ++ D ++ DHFRM+EFKIRRC R RSHDWT+CP++HPGEKARRRDPR++HY+G  CPEF 
Sbjct: 51  DSEDPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFS 110

Query: 123 RKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSP 182
           R G+C +GD C  AHG+FECWLHP+RYRT+ CKDG  C+R+VCFFAH P QLRVLP  SP
Sbjct: 111 RHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP-PSP 170

Query: 183 RTPVS---ADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSP 234
              +S     S   SP   L+  +         SPTS + +     PS SPPLSP
Sbjct: 171 ENHISGGCGGSPSSSPASVLSNKNNRCCLFCSHSPTSTL-LNLSRSPSSSPPLSP 223

[Close]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match: AT1G03790.1 (AT1G03790.1 Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 203.0 bits (515), Expect = 3.1e-52
Identity = 99/172 (57.56%), Postives = 123/172 (71.51%), Query Frame = 1 

Query: 66  DGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRK-G 125
           D ++ DHFRMFEFKIRRC R RSHDWT+CP+AHPGEKARRRDPR++ YSG  CPEFR+ G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 126 NCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLPQQSPRTP 185
           +C +GD C+ AHG+FECWLHP RYRT+ CKDG  C+R+VCFFAH P QLRVLP ++    
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPEN---- 195

Query: 186 VSADSVDGSPRISLAFDSYFAKGSLVTSPTSII--SMPPVS-PPSDSPPLSP 234
           VS  S   SP        + +     +SPTS +  ++  +S  PS SPP+SP
Sbjct: 196 VSGVSASPSPAAKNPCCLFCS-----SSPTSTLLGNLSHLSRSPSLSPPMSP 238

[Close]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match: gi|659103773|ref|XP_008452695.1| (PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo])

HSP 1 Score: 614.0 bits (1582), Expect = 1.6e-172
Identity = 304/357 (85.15%), Postives = 318/357 (89.08%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60
           MIGEQSRF HTIQVPPWDP EDHH  G+SSPVF+ GG+DSFIDSFS+IHRYLPSAADS  
Sbjct: 2   MIGEQSRFNHTIQVPPWDPLEDHHITGVSSPVFVAGGVDSFIDSFSSIHRYLPSAADSDE 61

Query: 61  AE---EAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 120
            +   EAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA
Sbjct: 62  LDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 121

Query: 121 CPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLP 180
           CPEFRKGNCKKGDSCD AHGIFECWLHPARYRTQPCKDGLACRRRVCFFAH PEQLRVLP
Sbjct: 122 CPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLP 181

Query: 181 QQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQ 240
           QQSPRTPVSADSVDGS R++ AFDSYF+KGS VTSPTSI+S PPVSPPSDSPPLSPNCP 
Sbjct: 182 QQSPRTPVSADSVDGSSRVAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCP- 241

Query: 241 LGGGSFNSMTKLAS--SHLKIGKSKAT-PHWG-IQLG-QNLLSPSGSGFYSLPSTPTTGK 300
                FNSM  L S   +L++GK KAT PHWG IQLG QN LSPSGSG Y+LPSTPTTG 
Sbjct: 242 -----FNSMNGLVSCMRNLQLGKLKATGPHWGRIQLGSQNPLSPSGSGLYNLPSTPTTGN 301

Query: 301 YELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM 350
           YELWGKNYEEEPAMERVESGRDLRA+MYAKLSKDNSVKE  DST TPDVGWVSELLM
Sbjct: 302 YELWGKNYEEEPAMERVESGRDLRAQMYAKLSKDNSVKE-MDSTLTPDVGWVSELLM 351

[Close]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match: gi|449447095|ref|XP_004141305.1| (PREDICTED: zinc finger CCCH domain-containing protein 23-like [Cucumis sativus])

HSP 1 Score: 612.8 bits (1579), Expect = 3.6e-172
Identity = 301/355 (84.79%), Postives = 314/355 (88.45%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPGGLDSFIDSFSAIHRYLPSAADSTA 60
           MIGEQSRF HTIQVPPWDP +DHH  GISSPVFI  G+DSFIDSFS+IHRYLPSAADS  
Sbjct: 2   MIGEQSRFNHTIQVPPWDPLDDHHMTGISSPVFISSGVDSFIDSFSSIHRYLPSAADSDE 61

Query: 61  AE---EAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 120
            +   EAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA
Sbjct: 62  LDGVGEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 121

Query: 121 CPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHLPEQLRVLP 180
           CPEFRKGNCKKGDSCD AHGIFECWLHPARYRTQPCKDGLACRRRVCFFAH PEQLRVLP
Sbjct: 122 CPEFRKGNCKKGDSCDFAHGIFECWLHPARYRTQPCKDGLACRRRVCFFAHTPEQLRVLP 181

Query: 181 QQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPPVSPPSDSPPLSPNCPQ 240
           QQSPRTPVSADSVDGS RI+ AFDSYF+KGS VTSPTSI+S PPVSPPSDSPPLSPNCP 
Sbjct: 182 QQSPRTPVSADSVDGSSRIAHAFDSYFSKGSFVTSPTSILSTPPVSPPSDSPPLSPNCP- 241

Query: 241 LGGGSFNSMTKLAS--SHLKIGKSKATPHWG-IQLGQNLLSPSGSGFYSLPSTPTTGKYE 300
                FNS+  L S   +L++GK KATPHWG IQLGQN LSPS SG Y+LPSTPTTG YE
Sbjct: 242 -----FNSVNGLVSCMRNLQLGKLKATPHWGRIQLGQNPLSPSSSGLYNLPSTPTTGNYE 301

Query: 301 LWGKNYEEEPAMERVESGRDLRAKMYAKLSKDNSVKEAADSTSTPDVGWVSELLM 350
           LWGKNYEEEPAMERVESGRDLRA+MYAKLSKDNSVKE  D   TPDVGWVSELLM
Sbjct: 302 LWGKNYEEEPAMERVESGRDLRAQMYAKLSKDNSVKE-MDPILTPDVGWVSELLM 349

[Close]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match: gi|147865633|emb|CAN83255.1| (hypothetical protein VITISV_036981 [Vitis vinifera])

HSP 1 Score: 462.2 bits (1188), Expect = 8.0e-127
Identity = 239/381 (62.73%), Postives = 281/381 (73.75%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPG-------------GLDSFI--DSF 60
           MIGE +R   T+QVPPWDP++D  T G+ SP  + G               + FI  ++F
Sbjct: 49  MIGEPTRSNPTVQVPPWDPYDDP-TAGMGSPFPVSGVNFNGNAASPTGGDYNPFIISEAF 108

Query: 61  SAIHRYLPSAADSTAA----EEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGE 120
           S++ RYLPS    T +    E  VD FSCD FRMFEFK+RRCARGRSHDWTECPYAHPGE
Sbjct: 109 SSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGE 168

Query: 121 KARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRR 180
           KARRRDPRK+HYSGTACPEFRKGNCKKGDSC+ AHG+FECWLHPARYRTQPCKDG  CRR
Sbjct: 169 KARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRR 228

Query: 181 RVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPP 240
           RVCFFAH PEQLRVLPQQSPR   SA+S DGSP + LAFD Y +KGS ++SPTS +  PP
Sbjct: 229 RVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSP-LRLAFDPYLSKGSFISSPTSTLISPP 288

Query: 241 VSPPSDSPPLSPNCPQLGGGSFNSMTKLASS--HLKIGKSKATPH-WGIQLGQNLLSPSG 300
           VSPPSDSPP+SPN P    GSFNSM++L +S  +L++GK+K +P  WG+Q+G    SP G
Sbjct: 289 VSPPSDSPPMSPNSPSF-TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRG 348

Query: 301 S----GFYSLPSTPT-------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDN 349
           S    GF SLPSTPT        G  ++W K  EEEPAMERVESGRDLRA++YAK+SK+N
Sbjct: 349 STLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKEN 408

[Close]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match: gi|225429416|ref|XP_002275926.1| (PREDICTED: zinc finger CCCH domain-containing protein 23 [Vitis vinifera])

HSP 1 Score: 462.2 bits (1188), Expect = 8.0e-127
Identity = 239/381 (62.73%), Postives = 281/381 (73.75%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIPG-------------GLDSFI--DSF 60
           MIGE +R   T+QVPPWDP++D  T G+ SP  + G               + FI  ++F
Sbjct: 2   MIGEPTRSNPTVQVPPWDPYDDP-TAGMGSPFPVSGVNFNGNAASPTGGDYNPFIISEAF 61

Query: 61  SAIHRYLPSAADSTAA----EEAVDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGE 120
           S++ RYLPS    T +    E  VD FSCD FRMFEFK+RRCARGRSHDWTECPYAHPGE
Sbjct: 62  SSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGE 121

Query: 121 KARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACRR 180
           KARRRDPRK+HYSGTACPEFRKGNCKKGDSC+ AHG+FECWLHPARYRTQPCKDG  CRR
Sbjct: 122 KARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRR 181

Query: 181 RVCFFAHLPEQLRVLPQQSPRTPVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISMPP 240
           RVCFFAH PEQLRVLPQQSPR   SA+S DGSP + LAFD Y +KGS ++SPTS +  PP
Sbjct: 182 RVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSP-LRLAFDPYLSKGSFISSPTSTLISPP 241

Query: 241 VSPPSDSPPLSPNCPQLGGGSFNSMTKLASS--HLKIGKSKATPH-WGIQLGQNLLSPSG 300
           VSPPSDSPP+SPN P    GSFNSM++L +S  +L++GK+K +P  WG+Q+G    SP G
Sbjct: 242 VSPPSDSPPMSPNSPSF-TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRG 301

Query: 301 S----GFYSLPSTPT-------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAKLSKDN 349
           S    GF SLPSTPT        G  ++W K  EEEPAMERVESGRDLRA++YAK+SK+N
Sbjct: 302 STLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKEN 361

[Close]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match: gi|1009135660|ref|XP_015885103.1| (PREDICTED: zinc finger CCCH domain-containing protein 23 [Ziziphus jujuba])

HSP 1 Score: 454.1 bits (1167), Expect = 2.2e-124
Identity = 238/386 (61.66%), Postives = 282/386 (73.06%), Query Frame = 1 

Query: 1   MIGEQSRFTHTIQVPPWDPHEDHHTIGISSPVFIP------------GGLDSFIDSFSAI 60
           M+GE +RF  T+Q+P WDP ED   +  S    +P            G    F+DSFS++
Sbjct: 2   MLGEPTRFNPTVQIPQWDPFEDPTAVMASPFSSVPNSSVNVNANAGNGDYALFLDSFSSL 61

Query: 61  HRYLPS----AADSTAAEEA----VDGFSCDHFRMFEFKIRRCARGRSHDWTECPYAHPG 120
           HRYLPS    A++S +  E     VD FSCDHFRMFEFK+RRCARGRSHDWTE P AHPG
Sbjct: 62  HRYLPSNEYVASESDSLSEESDVPVDAFSCDHFRMFEFKVRRCARGRSHDWTEGPIAHPG 121

Query: 121 EKARRRDPRKYHYSGTACPEFRKGNCKKGDSCDLAHGIFECWLHPARYRTQPCKDGLACR 180
           EKARRRDPRK+HYSGTACP+FRKGNCKKGDSC+ AHG+FECWLHPARYRTQPCKDGL+CR
Sbjct: 122 EKARRRDPRKHHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGLSCR 181

Query: 181 RRVCFFAHLPEQLRVLPQQSPRT-PVSADSVDGSPRISLAFDSYFAKGSLVTSPTSIISM 240
           RRVCFFAH PEQLRVLPQQSPR    S DS DGSP +  AFDSY  KGS V+SPTSI++ 
Sbjct: 182 RRVCFFAHTPEQLRVLPQQSPRAHGSSCDSYDGSP-VRHAFDSYLTKGSFVSSPTSILTS 241

Query: 241 PPVSPPSDSPPLSPN-CPQLGGGSFNSMTKLASS--HLKIGKSKA-TPHWGIQLGQNLLS 300
           PPVSPPS+SPP+SP+   Q GGGS  S+++LA S   L++GK K  +P WG+Q+G    S
Sbjct: 242 PPVSPPSESPPMSPSGAAQPGGGSATSVSELALSMRGLQLGKMKMNSPSWGVQMGSGFGS 301

Query: 301 PSGS-----GFYSLPSTPT--------TGKYELWGKNYEEEPAMERVESGRDLRAKMYAK 349
           P G      GF SLPSTPT         G ++LW +  EEEPAMERVESG++LRAKMYAK
Sbjct: 302 PRGGSTLRPGFCSLPSTPTRTPTNRSGLGAFDLWDQTCEEEPAMERVESGKNLRAKMYAK 361

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g02240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C3H20_ARATH1.9e-9151.34Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana GN=At2g198... [more]
C3H49_ARATH6.2e-8750.40Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana GN=At4g291... [more]
C3H35_ORYSJ1.8e-8647.09Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica GN... [more]
C3H2_ORYSJ4.0e-8648.55Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=... [more]
C3H23_ARATH7.8e-8249.28Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g259... [more]
BLAST of Cp4.1LG06g02240 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BHR5_VITVI5.5e-12762.73Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036981 PE=4 SV=1[more]
F6H381_VITVI5.5e-12762.73Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g00610 PE=4 SV=... [more]
A0A067KDD1_JATCU1.4e-12261.89Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07708 PE=4 SV=1[more]
B9HE04_POPTR1.4e-11460.10Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0006s25080g PE=4 SV=2[more]
A9P9A8_POPTR7.0e-11459.11Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
BLAST of Cp4.1LG06g02240 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19810.11.0e-9251.34 CCCH-type zinc finger family protein[more]
AT4G29190.13.5e-8850.40 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G25900.14.4e-8349.28 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT5G44260.11.4e-5256.57 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G03790.13.1e-5257.56 Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
BLAST of Cp4.1LG06g02240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659103773|ref|XP_008452695.1|1.6e-17285.15PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis melo][more]
gi|449447095|ref|XP_004141305.1|3.6e-17284.79PREDICTED: zinc finger CCCH domain-containing protein 23-like [Cucumis sativus][more]
gi|147865633|emb|CAN83255.1|8.0e-12762.73hypothetical protein VITISV_036981 [Vitis vinifera][more]
gi|225429416|ref|XP_002275926.1|8.0e-12762.73PREDICTED: zinc finger CCCH domain-containing protein 23 [Vitis vinifera][more]
gi|1009135660|ref|XP_015885103.1|2.2e-12461.66PREDICTED: zinc finger CCCH domain-containing protein 23 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044271 cellular nitrogen compound biosynthetic process
biological_process GO:2000112 regulation of cellular macromolecule biosynthetic process
biological_process GO:0010468 regulation of gene expression
biological_process GO:0051171 regulation of nitrogen compound metabolic process
biological_process GO:0080090 regulation of primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g02240.1Cp4.1LG06g02240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 147..170
score: 20.0coord: 112..138
score: 5.
IPR000571Zinc finger, CCCH-typePROFILEPS50103ZF_C3H1coord: 113..139
score: 12.277coord: 147..171
score: 6
NoneNo IPR availableunknownCoilCoilcoord: 350..352
scor
NoneNo IPR availablePANTHERPTHR14493UNCHARACTERIZEDcoord: 46..329
score: 1.2E
NoneNo IPR availablePANTHERPTHR14493:SF41SUBFAMILY NOT NAMEDcoord: 46..329
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g02240Cucsa.353170Cucumber (Gy14) v1cgycpeB0923
Cp4.1LG06g02240Cucsa.395310Cucumber (Gy14) v1cgycpeB1044
Cp4.1LG06g02240CmaCh01G017670Cucurbita maxima (Rimu)cmacpeB504
Cp4.1LG06g02240CmaCh05G001120Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g02240CmaCh09G003260Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g02240CmaCh12G006220Cucurbita maxima (Rimu)cmacpeB199
Cp4.1LG06g02240CmoCh12G005600Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g02240CmoCh05G001180Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g02240CmoCh09G003240Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g02240CmoCh01G018150Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g02240Cla020897Watermelon (97103) v1cpewmB767
Cp4.1LG06g02240Cla022659Watermelon (97103) v1cpewmB756
Cp4.1LG06g02240Csa2G352420Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g02240Csa4G645850Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g02240MELO3C016852Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g02240MELO3C010774Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g02240ClCG05G017680Watermelon (Charleston Gray)cpewcgB702
Cp4.1LG06g02240ClCG08G016820Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g02240CSPI02G18220Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g02240CSPI04G25130Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g02240Lsi08G015600Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g02240Lsi04G014430Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g02240MELO3C016852.2Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g02240MELO3C010774.2Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g02240CsaV3_2G025800Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g02240CsaV3_4G035420Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g02240Bhi09G002606Wax gourdcpewgoB0997
Cp4.1LG06g02240CsGy4G023430Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g02240CsGy1G027020Cucumber (Gy14) v2cgybcpeB139
Cp4.1LG06g02240Carg21747Silver-seed gourdcarcpeB0448
Cp4.1LG06g02240Carg10671Silver-seed gourdcarcpeB1083
Cp4.1LG06g02240Carg13023Silver-seed gourdcarcpeB0142
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g02240Cp4.1LG11g00010Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g02240Cp4.1LG02g06310Cucurbita pepo (Zucchini)cpecpeB459
Cp4.1LG06g02240Cp4.1LG07g06240Cucurbita pepo (Zucchini)cpecpeB510
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g02240Wax gourdcpewgoB0976
Cp4.1LG06g02240Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g02240Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g02240Silver-seed gourdcarcpeB0267