Carg13023 (gene) Silver-seed gourd

Overview
NameCarg13023
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionZinc finger CCCH domain-containing protein
LocationCucurbita_argyrosperma_scaffold_052 : 706937 .. 709343 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGACAAGGGAGGGCGTTGTCTGATACTGCAACTGCAACCCACTATCGTGTTTTACCGGCTGACGATATGATTATCGGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCCGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATACGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCAGAGCCGTACGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGTAACTTGCATCTGAGCAAGGTCAAGTCACTGCCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTACTGAAGTGAGTATGGAAATCAAACTTTTGGTTGGTACAATCGGGTTATTCTCTTAATCACAATTCAATTCTGATTTGAAGAACAAATTAGCCTAAGCCAAGCCTTTTGGTTCATATGTAAATACAGAATGGGAGGCAGCCCAGCTGAAACTGGAGGACTATAGGATTTAATTTTTACGCATGTAAGGCTTAAATATGTGTATATATTGCTCTGTTTTTTAGATTTTGAGGTGGGTTGAAAGAATTTAGAAACTATATTTTGATGGAGAAGAACAGAAATCCGTCTTGACTTAATGTATAGGTATGGTAACTGGATGATCCGTTGGATCATGGCCTCTCTGATCATTGTGATTATATTGTAAGTTAATGTTCTTAATGCAATTATGTGGATGAATTTGGGTCGCTTCTATCCAATCATAGTTTCTGTAAACCCAGAATTTGAAGGTATCTTGATTGGCTCTGGTTCTTTTGGGGATATAGGATTATGAACAAGTAAGCTGCGTGGGATTGGGGGAATTGAAAATTGAAGTTCCCTTCGAGGGATGGAGGGAAAAGGGAAGTGATGTTATTTTAATGGGTTTGGTTTAAACATGTGCACAACGTATGTTCTAAGGAGGTAAGTTTAGAATTTAGTTCTTGAATTGTCGCAAGGAATTGGCTTGCCTTTTGAAGTCGCTACTCTTTTTTGTTGTGTGTATAAAGAAGTCAGTTAAACATTAGTTGTAGCTTCAGTATAATGGTTGCATACATGCCAACAGGTGAGCCTCATTTCGTTCGGGTGATGTGGGCGTTTCACAATTCATTCTCTTTCAGGGTCCAGTGATGTTGGCACTCGAGGGATCTCACAATCCACTCGGGGACACGCCAACAGCTTTAGGCAAGACGACGTTGCACTCGAGAGACGCTAACACTCGTTTCTCCCTAATTGATGTCTCACATTTCACTGCTTCGGGGACCCTTTTTGGTTGCGACCTCGAAAGTCAAAATAGTGAGGAAGAAATATGGAAGGATGTTGTAGGGTGATTGGAGAGCAGTATGTAATTTTCAATAAGGTCAAAACAGTCATTTTCCGTTTCTCTTTTGAACTGCTTCAAAAAAGTTCCCTATTTTTTCTCCACAATAACATTAATGATGTTTAAAGGTCTTGTATACTTCTTTCAAGAGTTGTGACATTTAAAATTTTATTTATATTTCAAAGGATTTGA

mRNA sequence

AGACAAGGGAGGGCGTTGTCTGATACTGCAACTGCAACCCACTATCGTGTTTTACCGGCTGACGATATGATTATCGGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCCGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATACGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCAGAGCCGTACGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGTAACTTGCATCTGAGCAAGGTCAAGTCACTGCCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTACTGAAGATTTGA

Coding sequence (CDS)

ATGATTATCGGTGAACGCCACCGCCCTGGTCCGGTGGTTCACATCACTCCTTTGACGATACCGGAGGAGCCTGCAAGCGAGACGCGGTTTCCTTATCCTCTGAGCGGAATCTCGGTGAGTTCCGATGGAAATGGCAATGGTGGCGATTACTCTTCCTATTATCTGAAGGAAGCTCTAGCGGCTCTCCAGCGATATACGAACGAGTCGGAGATTGAATCGGATTCGGAATTATCCGGGCGGGAATCGGACGTTCCGGTGGATGCGTACTCGTGCGATAATTTCCGGATTTTTGAGTTTAAGGTGAGGAAGTGCACGCGAGGACGGTCTCATGATTGGACGGAGTGTCCGTTCGCACATCCAGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCTTGTCCCGACTTTCGTAAAGGTAGCTGTAAAAAAGGGGATTCGTGTGAGTTTGCTCATGGTGTATTCGAGTGTTGGCTCCATCCTGCTCGTTACAGGACTCAGCCGTGCAAGGACGGGACGAACTGTCGACGGAGGGTCTGTTTCTTCGCCCACACTCCTGAGCAACTTAGGGTTTTGCCTCAGCAGAGCCCGAGAAGCGCGTACTCCCCAGAGCCGTACGATGAATCTCCTGTACGGCAGTGTTTGGATGGATCCTGTGCCAAATCGCTGCCGTTTCTGTCTTCTCCGGTGTCTGTATCACCGTCGGCGACTCCAGTAGACTCCCCACCGTTATCTCCCATGACTCGATCGCTCGGCCGATCTCTTGGCTCGAGCTCCATTAATGAAATGGTCGCATCTCTCCGTAACTTGCATCTGAGCAAGGTCAAGTCACTGCCATCTTCCTGGAATGTTCAGATTGGATCCCCTGGTTATCCGTCTCGAATCTGCCATGGATTCTGTAGCCTTCCAACAACACCAACTCGGGCTCCAACTGCTCCTGGAGTTGGGCTGCTCGACTTCTCGGACCACGGATTGCAGGAGGAACCAGCTATGGAGCGAGTGGAATCAGGAAGGGAGCTGAGGGCGAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCTCTGGACCTGGTGGATTCAAGCTCTTCAGCTTGCACACCAGACGTTGGATGGGTATCAGAGCTACTGAAGATTTGA

Protein sequence

MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALAALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPSATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLKI
Homology
[Close]
BLAST of Carg13023 vs. NCBI nr
Match: XP_023516367.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 736.9 bits (1901), Expect = 3.5e-209
Identity = 380/381 (99.74%), Postives = 381/381 (100.00%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60
           MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA
Sbjct: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60

Query: 61  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120
           ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP
Sbjct: 61  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120

Query: 121 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 180
           GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC
Sbjct: 121 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 180

Query: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 240
           RRRVCFFAHTPEQLRVLPQQSPRSAYSPEP+DESPVRQCLDGSCAKSLPFLSSPVSVSPX
Sbjct: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPFDESPVRQCLDGSCAKSLPFLSSPVSVSPX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 300
           XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 300

Query: 301 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360
           CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD
Sbjct: 301 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360

Query: 361 LVDSSSSACTPDVGWVSELLK 382
           LVDSSSSACTPDVGWVSELLK
Sbjct: 361 LVDSSSSACTPDVGWVSELLK 381

[Close]
BLAST of Carg13023 vs. NCBI nr
Match: XP_022961034.1 (zinc finger CCCH domain-containing protein 20 [Cucurbita moschata])

HSP 1 Score: 733.4 bits (1892), Expect = 3.9e-208
Identity = 379/381 (99.48%), Postives = 379/381 (99.48%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60
           MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA
Sbjct: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60

Query: 61  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120
           ALQRY NESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP
Sbjct: 61  ALQRYANESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120

Query: 121 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 180
           GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKD TNC
Sbjct: 121 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDETNC 180

Query: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 240
           RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX
Sbjct: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 300
           XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 300

Query: 301 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360
           CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD
Sbjct: 301 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360

Query: 361 LVDSSSSACTPDVGWVSELLK 382
           LVDSSSSACTPDVGWVSELLK
Sbjct: 361 LVDSSSSACTPDVGWVSELLK 381

[Close]
BLAST of Carg13023 vs. NCBI nr
Match: XP_022987756.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 725.7 bits (1872), Expect = 8.1e-206
Identity = 374/381 (98.16%), Postives = 377/381 (98.95%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60
           MIIGERHRPGPVVHITPLTIPEEPASETRF YPLSGISVSSDGN NGGDYSSYYLKEALA
Sbjct: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFTYPLSGISVSSDGNANGGDYSSYYLKEALA 60

Query: 61  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120
           ALQRYTN SEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP
Sbjct: 61  ALQRYTNVSEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 120

Query: 121 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 180
           GEKARRRDPRKYHYSGTACPDFRKG+CKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC
Sbjct: 121 GEKARRRDPRKYHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 180

Query: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 240
           RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKS+PFLSSPVSVSPX
Sbjct: 181 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSMPFLSSPVSVSPX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 300
           XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR+
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRV 300

Query: 301 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360
           CHGFCSLPTTPTRAPTAPGVG LDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD
Sbjct: 301 CHGFCSLPTTPTRAPTAPGVGRLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 360

Query: 361 LVDSSSSACTPDVGWVSELLK 382
           LVDSSSSACTPDVGWVSELLK
Sbjct: 361 LVDSSSSACTPDVGWVSELLK 381

[Close]
BLAST of Carg13023 vs. NCBI nr
Match: XP_004135688.1 (PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis sativus])

HSP 1 Score: 673.7 bits (1737), Expect = 3.7e-190
Identity = 342/382 (89.53%), Postives = 362/382 (94.76%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEP-ASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+I ERHRPGPVVHITPLTIPEEP A+ETRFPYPLSGISVSSDGN NGGDYS YYL+EAL
Sbjct: 1   MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEAL 60

Query: 61  AALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAH 120
           AALQRYTNESEIESDSELSGRE+DVP++AYSCD+FRIFEFKVRKCTRGRSHDWTECP+AH
Sbjct: 61  AALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAH 120

Query: 121 PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN 180
           PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN
Sbjct: 121 PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN 180

Query: 181 CRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSP 240
           CRRRVCFFAHTPEQLRVLPQQSPRSA SP+ YDESP+RQ +DGSC+K+LPFLSSPVSVSP
Sbjct: 181 CRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQSVDGSCSKTLPFLSSPVSVSP 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR 300
             XXXXXXXXXXXXXXXXXXXX  SINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR
Sbjct: 241 TAXXXXXXXXXXXXXXXXXXXXSTSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR 300

Query: 301 ICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSL 360
           +CHGFCSLPTTPTRAPT  GVGLLDF++HG +EEP MERVESGRELRAKMLEKLSKENSL
Sbjct: 301 VCHGFCSLPTTPTRAPTGHGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSL 360

Query: 361 DLVDSSSSACTPDVGWVSELLK 382
           D  +S+ S CTPDV WVSEL+K
Sbjct: 361 DWAESNPSTCTPDVEWVSELVK 382

[Close]
BLAST of Carg13023 vs. NCBI nr
Match: NP_001315383.1 (zinc finger CCCH domain-containing protein 49-like [Cucumis melo] >AGL76984.1 zinc finger CCCH domain-containing protein [Cucumis melo])

HSP 1 Score: 669.8 bits (1727), Expect = 5.3e-189
Identity = 344/381 (90.29%), Postives = 364/381 (95.54%), Query Frame = 0 

Query: 2   IIGERHRPGPVVHITPLTIPEEP-ASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 61
           +I ERHRPGPVVHITPLTIPEEP A+ETRFPYPLSGISVSSDGN NGGDYS YYL+EALA
Sbjct: 5   VISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALA 64

Query: 62  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 121
           ALQRYTNESEIESDSELSGRE+DVP++AYSCD+FRIFEFKVRKCTRGRSHDWTECP+AHP
Sbjct: 65  ALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHP 124

Query: 122 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 181
           GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC
Sbjct: 125 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 184

Query: 182 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 241
           RRRVCFFAHTPEQLRVLPQQSPRSA SPE YDESP+RQ +DG C+KS+PF+SSPVSVSPX
Sbjct: 185 RRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSVDGPCSKSMPFMSSPVSVSPX 244

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 301
           XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR+
Sbjct: 245 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRV 304

Query: 302 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 361
           CHGFCSLPTTPTRAPT  GVGLLDFS++G +EEP MERVESGRELRAKMLEKLSKENSLD
Sbjct: 305 CHGFCSLPTTPTRAPTGHGVGLLDFSEYGFEEEPVMERVESGRELRAKMLEKLSKENSLD 364

Query: 362 LVDSSSSACTPDVGWVSELLK 382
             +S+ S CTPDV WVSEL+K
Sbjct: 365 WAESNPSTCTPDVEWVSELVK 385

[Close]
BLAST of Carg13023 vs. TAIR10
Match: AT2G19810.1 (CCCH-type zinc finger family protein)

HSP 1 Score: 369.4 bits (947), Expect = 2.7e-102
Identity = 207/393 (52.67%), Postives = 254/393 (64.63%), Query Frame = 0 

Query: 1   MIIGERHRP-GPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+IGE HR   P VHI P  + E+          +S I  S DG  +        + EAL
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSED--------LTVSDIYGSPDGGSS--------MMEAL 60

Query: 61  AALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPF 120
           A LQRY  +NE + +SD +LSG +S  P+DAY+CD+FR++EFKVR+C RGRSHDWTECP+
Sbjct: 61  AELQRYLPSNEPDPDSDPDLSGPDS--PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPY 120

Query: 121 AHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDG 180
           AHPGEKARRRDPRK+HYSGTACP+FRKG CK+GD+CEF+HGVFECWLHPARYRTQPCKDG
Sbjct: 121 AHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDG 180

Query: 181 TNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSV 240
            NCRRRVCFFAH+P+Q+RVLP QSP         D       L  +  ++  F  SP S 
Sbjct: 181 GNCRRRVCFFAHSPDQIRVLPNQSP---------DRVDSFDVLSPTIRRAFQFSISPSSN 240

Query: 241 SPXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVK-SLPSSWNVQIGSPGY 300
           SP                          N++VASLRNL L+KVK SL SS+N QIG  G 
Sbjct: 241 SPPVSPRGDSDSSCSLLSRSLGSNLG--NDVVASLRNLQLNKVKSSLSSSYNNQIGGYGX 300

Query: 301 P------SRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKML 360
                  S +  GF SLPTTPTR       G ++  ++GL+EEPAMERVESGRELRA++ 
Sbjct: 301 XXXXXRGSVLGPGFRSLPTTPTRP------GFMNIWENGLEEEPAMERVESGRELRAQLF 358

Query: 361 EKLSKENSLDLVD---SSSSACTPDVGWVSELL 381
           EKLSKEN +  ++      +  TPDVGWVS+L+
Sbjct: 361 EKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]
BLAST of Carg13023 vs. TAIR10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 334.3 bits (856), Expect = 9.6e-92
Identity = 198/387 (51.16%), Postives = 231/387 (59.69%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60
           M+IGE  R  P V I P  + EE  + + F  P+           N  D S   + EALA
Sbjct: 1   MMIGETRRTYPTVEIPPWPVLEE-LTTSEFFSPVM----------NSPDCS---MLEALA 60

Query: 61  ALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFA 120
            LQRY  +NE + ES  +L G +S  P+DAYSCD+FR+++FKVR+C RGRSHDWTECP+A
Sbjct: 61  GLQRYLPSNEPDPESYPDLLGPDS--PIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYA 120

Query: 121 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGT 180
           HPGEKARRRDPRKYHYSGTACPDFRKG CKKGDSCEFAHGVFECWLHPARYRTQPCKDG 
Sbjct: 121 HPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGG 180

Query: 181 NCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVS 240
           NC R++CFFAH+P+QLR L                                   SPVS S
Sbjct: 181 NCLRKICFFAHSPDQLRFL---------HTRXXXXXXXXXXXXXXXXXXXXXXISPVSGS 240

Query: 241 PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNV-QIGSPGYP 300
           P                        SIN++V S RNL  + VKS P +  +   GSP   
Sbjct: 241 PPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSP-RG 300

Query: 301 SRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMER-VESGRELRAKMLEKLSKE 360
           S +  GF SLPTTPTR       G LD  ++GL+EEP MER VESGRELR KM EKL KE
Sbjct: 301 SILGPGFQSLPTTPTRP------GNLDIWEYGLEEEPVMERVVESGRELREKMREKLHKE 355

Query: 361 NSLDLV---DSSSSACTPDVGWVSELL 381
           N +D V      +    PDVGWVS+LL
Sbjct: 361 NCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]
BLAST of Carg13023 vs. TAIR10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-74
Identity = 165/361 (45.71%), Postives = 212/361 (58.73%), Query Frame = 0 

Query: 1   MIIGE-RHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+IGE ++RP P +HI       +P +    P+  S ++++S    N   +S     ++ 
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATISSPF--SSVNLNS---VNDYPHSPSPYLDSF 60

Query: 61  AALQRYTNESEIESDSE-LSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFA 120
           A+L RY   +E+ +DS+  SG ES    D++S D FRI+EFK+R+C RGRSHDWTECPFA
Sbjct: 61  ASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFA 120

Query: 121 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGT 180
           HPGEKARRRDPRK+HYSGTACP+FRKGSC++GDSCEF+HGVFECWLHP+RYRTQPCKDGT
Sbjct: 121 HPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGT 180

Query: 181 NCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVS 240
           +CRRR+CFFAHT EQLRVL            P    P      G        L SP S S
Sbjct: 181 SCRRRICFFAHTTEQLRVL------------PCSLDPDLGFFSGLATSPTSILVSP-SFS 240

Query: 241 PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPS 300
           P                        S  E++AS+R + L+       SW     S    S
Sbjct: 241 P---------------PSESPPLSPSTGELIASMRKMQLN---GGGCSW-----SSPMRS 300

Query: 301 RICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENS 360
            +   F S    P +A T P +      +  ++E PAME VESG+ELRA+M  +LS+ENS
Sbjct: 301 AVRLPFSS-SLRPIQAATWPRI-----REFEIEEAPAMEFVESGKELRAEMYARLSRENS 314

[Close]
BLAST of Carg13023 vs. TAIR10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 208.8 bits (530), Expect = 6.1e-54
Identity = 96/161 (59.63%), Postives = 120/161 (74.53%), Query Frame = 0 

Query: 87  DAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRK-G 146
           D Y+ D+FR+FEFK+R+CTR RSHDWT+CPFAHPGEKARRRDPR++ YSG  CP+FR+ G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 147 SCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRS- 206
            C +GD CEFAHGVFECWLHP RYRT+ CKDG +C+R+VCFFAH+P QLRVLP ++    
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGV 195

Query: 207 AYSPEPYDESPVRQCLDGSCAK------SLPFLSSPVSVSP 240
           + SP P  ++P   CL  S +       +L  LS   S+SP
Sbjct: 196 SASPSPAAKNPC--CLFCSSSPTSTLLGNLSHLSRSPSLSP 234

[Close]
BLAST of Carg13023 vs. TAIR10
Match: AT5G12850.1 (CCCH-type zinc finger protein with ARM repeat domain)

HSP 1 Score: 202.6 bits (514), Expect = 4.4e-52
Identity = 93/164 (56.71%), Postives = 110/164 (67.07%), Query Frame = 0 

Query: 83  DVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDF 142
           D+    YS D FR+F FK+R C+R  SHDWTECPFAHPGE ARRRDPRK+HY+   CPDF
Sbjct: 247 DIKSGIYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDF 306

Query: 143 RKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRV------ 202
           +KGSCK+GD CE+AHGVFECWLHPA+YRT+ CKDG  C RRVCFFAH  E+LR       
Sbjct: 307 KKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPLYPSTG 366

Query: 203 --LPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVS 239
             LP     SA S    D + V   L GS + +    + P+S S
Sbjct: 367 SGLPSPRASSAVSASTMDMASVLNMLPGSPSAAQHSFTPPISPS 410

[Close]
BLAST of Carg13023 vs. Swiss-Prot
Match: sp|O82199|C3H20_ARATH (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 4.8e-101
Identity = 207/393 (52.67%), Postives = 254/393 (64.63%), Query Frame = 0 

Query: 1   MIIGERHRP-GPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+IGE HR   P VHI P  + E+          +S I  S DG  +        + EAL
Sbjct: 1   MMIGESHRGFNPTVHIPPWPLSED--------LTVSDIYGSPDGGSS--------MMEAL 60

Query: 61  AALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPF 120
           A LQRY  +NE + +SD +LSG +S  P+DAY+CD+FR++EFKVR+C RGRSHDWTECP+
Sbjct: 61  AELQRYLPSNEPDPDSDPDLSGPDS--PIDAYTCDHFRMYEFKVRRCARGRSHDWTECPY 120

Query: 121 AHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDG 180
           AHPGEKARRRDPRK+HYSGTACP+FRKG CK+GD+CEF+HGVFECWLHPARYRTQPCKDG
Sbjct: 121 AHPGEKARRRDPRKFHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDG 180

Query: 181 TNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSV 240
            NCRRRVCFFAH+P+Q+RVLP QSP         D       L  +  ++  F  SP S 
Sbjct: 181 GNCRRRVCFFAHSPDQIRVLPNQSP---------DRVDSFDVLSPTIRRAFQFSISPSSN 240

Query: 241 SPXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVK-SLPSSWNVQIGSPGY 300
           SP                          N++VASLRNL L+KVK SL SS+N QIG  G 
Sbjct: 241 SPPVSPRGDSDSSCSLLSRSLGSNLG--NDVVASLRNLQLNKVKSSLSSSYNNQIGGYGX 300

Query: 301 P------SRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKML 360
                  S +  GF SLPTTPTR       G ++  ++GL+EEPAMERVESGRELRA++ 
Sbjct: 301 XXXXXRGSVLGPGFRSLPTTPTRP------GFMNIWENGLEEEPAMERVESGRELRAQLF 358

Query: 361 EKLSKENSLDLVD---SSSSACTPDVGWVSELL 381
           EKLSKEN +  ++      +  TPDVGWVS+L+
Sbjct: 361 EKLSKENCMGRIEPDPDQGAGDTPDVGWVSDLV 358

[Close]
BLAST of Carg13023 vs. Swiss-Prot
Match: sp|Q9M0G2|C3H49_ARATH (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 1.7e-90
Identity = 198/387 (51.16%), Postives = 231/387 (59.69%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 60
           M+IGE  R  P V I P  + EE  + + F  P+           N  D S   + EALA
Sbjct: 1   MMIGETRRTYPTVEIPPWPVLEE-LTTSEFFSPVM----------NSPDCS---MLEALA 60

Query: 61  ALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFA 120
            LQRY  +NE + ES  +L G +S  P+DAYSCD+FR+++FKVR+C RGRSHDWTECP+A
Sbjct: 61  GLQRYLPSNEPDPESYPDLLGPDS--PIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYA 120

Query: 121 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGT 180
           HPGEKARRRDPRKYHYSGTACPDFRKG CKKGDSCEFAHGVFECWLHPARYRTQPCKDG 
Sbjct: 121 HPGEKARRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGG 180

Query: 181 NCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVS 240
           NC R++CFFAH+P+QLR L                                   SPVS S
Sbjct: 181 NCLRKICFFAHSPDQLRFL---------HTRXXXXXXXXXXXXXXXXXXXXXXISPVSGS 240

Query: 241 PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNV-QIGSPGYP 300
           P                        SIN++V S RNL  + VKS P +  +   GSP   
Sbjct: 241 PPMSPRADSESSPMTQSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSP-RG 300

Query: 301 SRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMER-VESGRELRAKMLEKLSKE 360
           S +  GF SLPTTPTR       G LD  ++GL+EEP MER VESGRELR KM EKL KE
Sbjct: 301 SILGPGFQSLPTTPTRP------GNLDIWEYGLEEEPVMERVVESGRELREKMREKLHKE 355

Query: 361 NSLDLV---DSSSSACTPDVGWVSELL 381
           N +D V      +    PDVGWVS+LL
Sbjct: 361 NCMDRVAQDPDQNLGEAPDVGWVSDLL 355

[Close]
BLAST of Carg13023 vs. Swiss-Prot
Match: sp|Q9FU27|C3H2_ORYSJ (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.4e-76
Identity = 181/375 (48.27%), Postives = 219/375 (58.40%), Query Frame = 0 

Query: 33  PLSGISVSSDGNGNGGDYSSYYLKEALAALQRY--TNESEIESDSELSGRESDVPVDAYS 92
           P+SG+ V           + Y     +AAL+ Y   N+  + +D E         VDAY+
Sbjct: 18  PVSGVDVLGXXXXXXXXMTPY----VIAALRDYLPANDVGVGADEEXXXXAMAAAVDAYA 77

Query: 93  CDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKG 152
           CD FR++EFKVR+C RGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKG CK+G
Sbjct: 78  CDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGGCKRG 137

Query: 153 DSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLP--QQSPRSAYSP 212
           D+CE+AHGVFECWLHPARYRTQPCKDGT CRRRVCFFAHTP+QLRVLP  Q SPRS  S 
Sbjct: 138 DACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVAS- 197

Query: 213 EPYDE-----------SPVRQCLDGSCAKSLPFLSSPVSVSPXXXXXXXXXXXXXXXXXX 272
            P  E                                     XXXXXXXXXX        
Sbjct: 198 SPLAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIRRGS 257

Query: 273 XXXXXXSINEMVASLRNLHLSKVKSLPS-SWNVQIGSPGYPS-RICHGFCSLPTTP---- 332
                  +N+++AS R L L+KVKS PS  W+    S  Y S +   G  SLPTTP    
Sbjct: 258 WPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATGLYSLPTTPLAST 317

Query: 333 ----TRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSL--DLVDSS 381
               T +   P +  LD    G  EEP ++RVESGR LR K+ E+LS++ ++  D    +
Sbjct: 318 ATVTTASSFMPNLEPLDLGLIG-DEEP-VQRVESGRALREKVFERLSRDGAISGDATAFA 377

[Close]
BLAST of Carg13023 vs. Swiss-Prot
Match: sp|O82307|C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 3.3e-73
Identity = 165/361 (45.71%), Postives = 212/361 (58.73%), Query Frame = 0 

Query: 1   MIIGE-RHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+IGE ++RP P +HI       +P +    P+  S ++++S    N   +S     ++ 
Sbjct: 1   MMIGENKNRPHPTIHIPQWDQINDPTATISSPF--SSVNLNS---VNDYPHSPSPYLDSF 60

Query: 61  AALQRYTNESEIESDSE-LSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFA 120
           A+L RY   +E+ +DS+  SG ES    D++S D FRI+EFK+R+C RGRSHDWTECPFA
Sbjct: 61  ASLFRYLPSNELTNDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFA 120

Query: 121 HPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGT 180
           HPGEKARRRDPRK+HYSGTACP+FRKGSC++GDSCEF+HGVFECWLHP+RYRTQPCKDGT
Sbjct: 121 HPGEKARRRDPRKFHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGT 180

Query: 181 NCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVS 240
           +CRRR+CFFAHT EQLRVL            P    P      G        L SP S S
Sbjct: 181 SCRRRICFFAHTTEQLRVL------------PCSLDPDLGFFSGLATSPTSILVSP-SFS 240

Query: 241 PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPS 300
           P                        S  E++AS+R + L+       SW     S    S
Sbjct: 241 P---------------PSESPPLSPSTGELIASMRKMQLN---GGGCSW-----SSPMRS 300

Query: 301 RICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENS 360
            +   F S    P +A T P +      +  ++E PAME VESG+ELRA+M  +LS+ENS
Sbjct: 301 AVRLPFSS-SLRPIQAATWPRI-----REFEIEEAPAMEFVESGKELRAEMYARLSRENS 314

[Close]
BLAST of Carg13023 vs. Swiss-Prot
Match: sp|Q6L4N4|C3H35_ORYSJ (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 3.4e-70
Identity = 160/331 (48.34%), Postives = 192/331 (58.01%), Query Frame = 0 

Query: 87  DAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPDFRKGS 146
           DAY+CD FR++EFKVR+C RGRSHDWTECPFAHPGEKARRRDPR+Y YSGTACPDFRKG 
Sbjct: 71  DAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFRKGG 130

Query: 147 CKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSAY 206
           CK+GD+CEFAHGVFECWLHPARYRTQPCKDGT CRRRVCFFAHTP+QLRVLP    + + 
Sbjct: 131 CKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQGSN 190

Query: 207 SPE-------PYDESPVRQCLDGSCAKSLPFLS----------------SPVSVSPXXXX 266
           SP            SP+ +  DGS  +   F S                       XXXX
Sbjct: 191 SPRGCXXXXXXXXXSPLAESYDGSPLRRQAFESYLTXXXXXXXXXXXXXXXXXXXXXXXX 250

Query: 267 XXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWN-----VQIGSP---- 326
           XXXXX                +N++  SLR L L   +S PS  +      Q GSP    
Sbjct: 251 XXXXXAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPKXXX 310

Query: 327 ---GYPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGL-QEEPAMERVESGRELRAKML 381
                                    +     ++  D GL +EE  MERVESGR LR K+ 
Sbjct: 311 XXXXXXXXXXXXXXXXXXXXXXXXXSGATVTVEPLDLGLIEEEQPMERVESGRALREKVF 370

[Close]
BLAST of Carg13023 vs. TrEMBL
Match: tr|A0A1S3BQ41|A0A1S3BQ41_CUCME (zinc finger CCCH domain-containing protein 49-like OS=Cucumis melo OX=3656 GN=LOC103492287 PE=4 SV=1)

HSP 1 Score: 671.4 bits (1731), Expect = 1.2e-189
Identity = 344/382 (90.05%), Postives = 364/382 (95.29%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEP-ASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEAL 60
           M+I ERHRPGPVVHITPLTIPEEP A+ETRFPYPLSGISVSSDGN NGGDYS YYL+EAL
Sbjct: 1   MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEAL 60

Query: 61  AALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAH 120
           AALQRYTNESEIESDSELSGRE+DVP++AYSCD+FRIFEFKVRKCTRGRSHDWTECP+AH
Sbjct: 61  AALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAH 120

Query: 121 PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN 180
           PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN
Sbjct: 121 PGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTN 180

Query: 181 CRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSP 240
           CRRRVCFFAHTPEQLRVLPQQSPRSA SPE YDESP+RQ +DG C+KS+PF+SSPVSVSP
Sbjct: 181 CRRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSVDGPCSKSMPFMSSPVSVSP 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR 300
            XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR
Sbjct: 241 TXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR 300

Query: 301 ICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSL 360
           +CHGFCSLPTTPTRAPT  GVGLLDFS++G +EEP MERVESGRELRAKMLEKLSKENSL
Sbjct: 301 VCHGFCSLPTTPTRAPTGHGVGLLDFSEYGFEEEPVMERVESGRELRAKMLEKLSKENSL 360

Query: 361 DLVDSSSSACTPDVGWVSELLK 382
           D  +S+ S CTPDV WVSEL+K
Sbjct: 361 DWAESNPSTCTPDVEWVSELVK 382

[Close]
BLAST of Carg13023 vs. TrEMBL
Match: tr|R4QQJ8|R4QQJ8_CUCME (Zinc finger CCCH domain-containing protein OS=Cucumis melo OX=3656 PE=2 SV=1)

HSP 1 Score: 669.8 bits (1727), Expect = 3.5e-189
Identity = 344/381 (90.29%), Postives = 364/381 (95.54%), Query Frame = 0 

Query: 2   IIGERHRPGPVVHITPLTIPEEP-ASETRFPYPLSGISVSSDGNGNGGDYSSYYLKEALA 61
           +I ERHRPGPVVHITPLTIPEEP A+ETRFPYPLSGISVSSDGN NGGDYS YYL+EALA
Sbjct: 5   VISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALA 64

Query: 62  ALQRYTNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECPFAHP 121
           ALQRYTNESEIESDSELSGRE+DVP++AYSCD+FRIFEFKVRKCTRGRSHDWTECP+AHP
Sbjct: 65  ALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHP 124

Query: 122 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 181
           GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC
Sbjct: 125 GEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNC 184

Query: 182 RRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPVSVSPX 241
           RRRVCFFAHTPEQLRVLPQQSPRSA SPE YDESP+RQ +DG C+KS+PF+SSPVSVSPX
Sbjct: 185 RRRVCFFAHTPEQLRVLPQQSPRSANSPESYDESPLRQSVDGPCSKSMPFMSSPVSVSPX 244

Query: 242 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRI 301
           XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSR+
Sbjct: 245 XXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRV 304

Query: 302 CHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKMLEKLSKENSLD 361
           CHGFCSLPTTPTRAPT  GVGLLDFS++G +EEP MERVESGRELRAKMLEKLSKENSLD
Sbjct: 305 CHGFCSLPTTPTRAPTGHGVGLLDFSEYGFEEEPVMERVESGRELRAKMLEKLSKENSLD 364

Query: 362 LVDSSSSACTPDVGWVSELLK 382
             +S+ S CTPDV WVSEL+K
Sbjct: 365 WAESNPSTCTPDVEWVSELVK 385

[Close]
BLAST of Carg13023 vs. TrEMBL
Match: tr|A0A2I4GRS1|A0A2I4GRS1_9ROSI (zinc finger CCCH domain-containing protein 20-like OS=Juglans regia OX=51240 GN=LOC109010264 PE=4 SV=1)

HSP 1 Score: 518.5 bits (1334), Expect = 1.3e-143
Identity = 282/394 (71.57%), Postives = 322/394 (81.73%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGN--GGDYSSYYLKEA 60
           M++GE HRP P VH+ P  + ++P ++   PY LS +SV+SDGN N  GGDYSSYY++EA
Sbjct: 1   MMLGEPHRPNPTVHVPPWPLQDDPTADMYAPYSLSPLSVNSDGNANSSGGDYSSYYIQEA 60

Query: 61  LAALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECP 120
           L ALQRY  +N ++I+SD ++ GRESD PVDAYSCD+FR+FEFKVR+C RGRSHDWTECP
Sbjct: 61  LTALQRYLPSNGTDIDSDFDVVGRESDAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECP 120

Query: 121 FAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKD 180
           +AHPGEKARRRDPRKYHYSGTACPDFRKG+CKK D+CEFAHGVFECWLHPARYRTQPCKD
Sbjct: 121 YAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKSDACEFAHGVFECWLHPARYRTQPCKD 180

Query: 181 GTNCRRRVCFFAHTPEQLRVLPQQSPR----SAYSPEPYDESPVRQCLDGSCAKSLPFLS 240
           GT+CRRRVCFFAHTPEQLRVLPQQSPR    S  S E YD SP+R  ++ +CAKSL FLS
Sbjct: 181 GTSCRRRVCFFAHTPEQLRVLPQQSPRSVSNSVNSVESYDGSPLRHAIEATCAKSLSFLS 240

Query: 241 SPVSVS-PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQI 300
           SP S+S PXXXXXXXXXXXXXXXXXXXXX   SINEM ASLRNL L KVKSLPSS NV +
Sbjct: 241 SPSSISPPXXXXXXXXXXXXXXXXXXXXXGSSSINEMAASLRNLQLGKVKSLPSSRNVPM 300

Query: 301 GSP--GYP--SRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRA 360
           GSP  G P  S +  GFCS+PTTPT+ PT PG+G LD  D    EEP MERVESGR+LRA
Sbjct: 301 GSPVFGSPRGSMLRPGFCSVPTTPTQVPTRPGIGYLDCWDQCCAEEPPMERVESGRDLRA 360

Query: 361 KMLEKLSKENSLDLVDSSSSACTPDVGWVSELLK 382
           KM EKLSKENSL  V++S S+  PDVGWVSEL+K
Sbjct: 361 KMFEKLSKENSLGRVETSPSSGGPDVGWVSELVK 394

[Close]
BLAST of Carg13023 vs. TrEMBL
Match: tr|F6HGX4|F6HGX4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g02790 PE=4 SV=1)

HSP 1 Score: 511.5 bits (1316), Expect = 1.6e-141
Identity = 280/393 (71.25%), Postives = 321/393 (81.68%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNGN---GGDYSSYYLKE 60
           M+IGE   P P V + P    ++P  +  FPYP+SG+SV+S+ N N   GG++S + L E
Sbjct: 1   MMIGESRHPNPTVLVPPWPHFDDPTVDISFPYPVSGVSVNSNANANGLQGGEHSPFLLGE 60

Query: 61  ALAALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTEC 120
           AL ALQRY  +N+ +++SDS++SGRE+D+PVDAYSCD+FR+FEFKVR+C RGRSHDWTEC
Sbjct: 61  ALTALQRYLPSNDVDVDSDSDISGREADIPVDAYSCDHFRMFEFKVRRCARGRSHDWTEC 120

Query: 121 PFAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCK 180
           P+AHPGEKARRRDPRK+HYSGTACPDFRKG+CKKGDSCEFAHGVFECWLHPARYRTQPCK
Sbjct: 121 PYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCK 180

Query: 181 DGTNCRRRVCFFAHTPEQLRVLPQQSPRSAYSPEPYDESPVRQCLDGSCAKSLPFLSSPV 240
           DG NCRRRVCFFAHT EQLRVLPQQSPR+  S E YD SP+RQ L+ SCAK+LPF+SSP 
Sbjct: 181 DGPNCRRRVCFFAHTAEQLRVLPQQSPRTPGSVESYDGSPLRQALEASCAKTLPFMSSPG 240

Query: 241 SVS-PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQIGSP 300
           SVS PXXXXXXXXXXXXXXXXXXXXXXX SINEMVASLR L LSKVKS PSSW V +GSP
Sbjct: 241 SVSPPXXXXXXXXXXXXXXXXXXXXXXXNSINEMVASLRQLQLSKVKSAPSSWCVHMGSP 300

Query: 301 G-----YPSRICHGFCSLPTTPTRAPTAPGVGLLDFSDHGLQEEPAMERVESGRELRAKM 360
           G       S I  GFCSLP+TPTRAP   G+G +D      +EEPAMERVESGR+LRAKM
Sbjct: 301 GGFGSPRASIIRPGFCSLPSTPTRAPKRHGLGFVDL----FEEEPAMERVESGRDLRAKM 360

Query: 361 LEKLSKENSLDLVDSSSSACTPDVGWVSELLKI 383
            EKLSKENSLD  D S+S   PDVGWVSEL+K+
Sbjct: 361 FEKLSKENSLDRPDPSASGAGPDVGWVSELVKL 389

[Close]
BLAST of Carg13023 vs. TrEMBL
Match: tr|A0A2N9IKS7|A0A2N9IKS7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 2.1e-141
Identity = 281/396 (70.96%), Postives = 324/396 (81.82%), Query Frame = 0 

Query: 1   MIIGERHRPGPVVHITPLTIPEEPASETRFPYPLSGISVSSDGNG--NGGDYSSYYLKEA 60
           M++GE H P P VH+ P    ++  ++   PY L+ +SV+SDGNG  N GDYS YY++E 
Sbjct: 1   MMLGEPHHPNPTVHVPPWPPHDDLTADMYSPYSLTSLSVNSDGNGNANAGDYSPYYMQEV 60

Query: 61  LAALQRY--TNESEIESDSELSGRESDVPVDAYSCDNFRIFEFKVRKCTRGRSHDWTECP 120
           + ALQRY  +NE++++ DS+ SGRE+D PVDAYSCD+FR+FEFKVR+C RGRSHDWTECP
Sbjct: 61  MTALQRYLPSNEADLDLDSD-SGREADAPVDAYSCDHFRMFEFKVRRCARGRSHDWTECP 120

Query: 121 FAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKD 180
           +AHPGEKARRRDPRKYHYSGTACPDFRKG+CKKGD+CEFAHGVFECWLHPARYRTQPCKD
Sbjct: 121 YAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDTCEFAHGVFECWLHPARYRTQPCKD 180

Query: 181 GTNCRRRVCFFAHTPEQLRVL-PQQSPRS----AYSPEPYDESPVRQCLDGSCAKSLPFL 240
           GT+CRRRVCFFAHTPEQLRVL PQQSPRS      S E YD SP R  ++ SCAK+LPF+
Sbjct: 181 GTSCRRRVCFFAHTPEQLRVLPPQQSPRSVNSVTNSVESYDGSPFRHAIEASCAKTLPFM 240

Query: 241 SSPVSVS-PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLHLSKVKSLPSSWNVQ 300
           SSP S+S PXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNL L KVKSLPSSWNVQ
Sbjct: 241 SSPSSISPPXXXXXXXXXXXXXXXXXXXXXXXXSINEMVASLRNLQLGKVKSLPSSWNVQ 300

Query: 301 IGSPGYPSR----ICHGFCSLPTTPTR-APTAPGVGLLDFSDHGLQEEPAMERVESGREL 360
           IGS G+ S     +  GFCS+PTTPTR APT PG+G  D  + G +EEP MERVESGR++
Sbjct: 301 IGSSGFGSPRGSILRPGFCSMPTTPTRTAPTRPGIGYFDLWEQGCEEEPPMERVESGRDI 360

Query: 361 RAKMLEKLSKENSLDLVDSSSSACTPDVGWVSELLK 382
           RAKM EKL +ENSL  VD S S  +PDVGWVSEL+K
Sbjct: 361 RAKMFEKLREENSLGRVDPSPSTNSPDVGWVSELVK 395

The following BLAST results are available for this feature:
BLAST of Carg13023 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023516367.13.5e-20999.74zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo][more]
XP_022961034.13.9e-20899.48zinc finger CCCH domain-containing protein 20 [Cucurbita moschata][more]
XP_022987756.18.1e-20698.16zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima][more]
XP_004135688.13.7e-19089.53PREDICTED: zinc finger CCCH domain-containing protein 20-like [Cucumis sativus][more]
NP_001315383.15.3e-18990.29zinc finger CCCH domain-containing protein 49-like [Cucumis melo] >AGL76984.1 zi... [more]
BLAST of Carg13023 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G19810.12.7e-10252.67CCCH-type zinc finger family protein[more]
AT4G29190.19.6e-9251.16Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT2G25900.11.8e-7445.71Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT1G03790.16.1e-5459.63Zinc finger C-x8-C-x5-C-x3-H type family protein[more]
AT5G12850.14.4e-5256.71CCCH-type zinc finger protein with ARM repeat domain[more]
BLAST of Carg13023 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O82199|C3H20_ARATH4.8e-10152.67Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9M0G2|C3H49_ARATH1.7e-9051.16Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q9FU27|C3H2_ORYSJ1.4e-7648.27Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=... [more]
sp|O82307|C3H23_ARATH3.3e-7345.71Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN... [more]
sp|Q6L4N4|C3H35_ORYSJ3.4e-7048.34Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX... [more]
BLAST of Carg13023 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BQ41|A0A1S3BQ41_CUCME1.2e-18990.05zinc finger CCCH domain-containing protein 49-like OS=Cucumis melo OX=3656 GN=LO... [more]
tr|R4QQJ8|R4QQJ8_CUCME3.5e-18990.29Zinc finger CCCH domain-containing protein OS=Cucumis melo OX=3656 PE=2 SV=1[more]
tr|A0A2I4GRS1|A0A2I4GRS1_9ROSI1.3e-14371.57zinc finger CCCH domain-containing protein 20-like OS=Juglans regia OX=51240 GN=... [more]
tr|F6HGX4|F6HGX4_VITVI1.6e-14171.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0016g02790 PE=4 SV=... [more]
tr|A0A2N9IKS7|A0A2N9IKS7_FAGSY2.1e-14170.96Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52602 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036855Znf_CCCH_sf
IPR000571Znf_CCCH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg13023-RACarg13023-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 133..159
e-value: 8.0E-6
score: 35.4
coord: 168..191
e-value: 10.0
score: 8.3
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 138..158
e-value: 1.6E-6
score: 27.8
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 168..192
score: 7.066
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 134..160
score: 13.854
NoneNo IPR availableGENE3DG3DSA:4.10.1000.10coord: 131..204
e-value: 1.9E-8
score: 36.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 235..256
NoneNo IPR availablePANTHERPTHR14493:SF74RING FINGER PROTEIN UNKEMPTcoord: 72..265
NoneNo IPR availablePANTHERPTHR14493UNCHARACTERIZEDcoord: 72..265
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILYSSF90229CCCH zinc fingercoord: 132..162

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg13023Cla011237Watermelon (97103) v1carwmB0090
Carg13023Cla020897Watermelon (97103) v1carwmB0092
Carg13023Cla016816Watermelon (97103) v1carwmB0093
Carg13023Csa1G575190Cucumber (Chinese Long) v2carcuB0101
Carg13023Csa4G645850Cucumber (Chinese Long) v2carcuB0103
Carg13023MELO3C016852Melon (DHL92) v3.5.1carmeB0098
Carg13023MELO3C015436Melon (DHL92) v3.5.1carmeB0096
Carg13023ClCG05G017680Watermelon (Charleston Gray)carwcgB0095
Carg13023ClCG03G015890Watermelon (Charleston Gray)carwcgB0094
Carg13023CSPI01G27790Wild cucumber (PI 183967)carcpiB0106
Carg13023CSPI04G25130Wild cucumber (PI 183967)carcpiB0108
Carg13023Cucsa.288580Cucumber (Gy14) v1carcgyB0114
Carg13023CmaCh11G006710Cucurbita maxima (Rimu)carcmaB0120
Carg13023CmaCh01G017670Cucurbita maxima (Rimu)carcmaB0123
Carg13023CmaCh10G006900Cucurbita maxima (Rimu)carcmaB0119
Carg13023CmoCh10G007170Cucurbita moschata (Rifu)carcmoB0128
Carg13023CmoCh09G003240Cucurbita moschata (Rifu)carcmoB0127
Carg13023CmoCh11G006830Cucurbita moschata (Rifu)carcmoB0129
Carg13023Lsi04G014430Bottle gourd (USVL1VR-Ls)carlsiB085
Carg13023Cp4.1LG18g03970Cucurbita pepo (Zucchini)carcpeB0138
Carg13023Cp4.1LG02g06310Cucurbita pepo (Zucchini)carcpeB0139
Carg13023Cp4.1LG04g10560Cucurbita pepo (Zucchini)carcpeB0141
Carg13023Cp4.1LG06g02240Cucurbita pepo (Zucchini)carcpeB0142
Carg13023CsGy4G023430Cucumber (Gy14) v2carcgybB0103
Carg13023CsGy1G027020Cucumber (Gy14) v2carcgybB0101
Carg13023MELO3C015436.2Melon (DHL92) v3.6.1carmedB0098
Carg13023MELO3C016852.2Melon (DHL92) v3.6.1carmedB0100
Carg13023CsaV3_1G040060Cucumber (Chinese Long) v3carcucB0109
Carg13023CsaV3_4G035420Cucumber (Chinese Long) v3carcucB0111
Carg13023CsaV3_UNG046330Cucumber (Chinese Long) v3carcucB0112
Carg13023Cla97C03G066180Watermelon (97103) v2carwmbB0094
Carg13023Cla97C05G098960Watermelon (97103) v2carwmbB0095
Carg13023Bhi06G001434Wax gourdcarwgoB0106
Carg13023Bhi09G002606Wax gourdcarwgoB0108
Carg13023Bhi02G001603Wax gourdcarwgoB0110
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg13023Carg12262Silver-seed gourdcarcarB038
Carg13023Carg10671Silver-seed gourdcarcarB106
The following block(s) are covering this gene:
GeneOrganismBlock
Carg13023Cucumber (Chinese Long) v2carcuB0102
Carg13023Cucumber (Chinese Long) v3carcucB0110
Carg13023Bottle gourd (USVL1VR-Ls)carlsiB083
Carg13023Bottle gourd (USVL1VR-Ls)carlsiB086
Carg13023Bottle gourd (USVL1VR-Ls)carlsiB087
Carg13023Melon (DHL92) v3.5.1carmeB0097
Carg13023Melon (DHL92) v3.6.1carmedB0099
Carg13023Watermelon (Charleston Gray)carwcgB0093
Carg13023Watermelon (97103) v1carwmB0091
Carg13023Watermelon (97103) v2carwmbB0093
Carg13023Watermelon (97103) v2carwmbB0096
Carg13023Wax gourdcarwgoB0107
Carg13023Silver-seed gourdcarcarB102
Carg13023Silver-seed gourdcarcarB104
Carg13023Silver-seed gourdcarcarB108
Carg13023Cucumber (Gy14) v2carcgybB0102
Carg13023Cucumber (Gy14) v1carcgyB0111
Carg13023Cucurbita maxima (Rimu)carcmaB0121
Carg13023Cucurbita maxima (Rimu)carcmaB0124
Carg13023Cucurbita maxima (Rimu)carcmaB0125
Carg13023Cucurbita moschata (Rifu)carcmoB0130
Carg13023Cucurbita moschata (Rifu)carcmoB0132
Carg13023Cucurbita moschata (Rifu)carcmoB0134
Carg13023Cucurbita pepo (Zucchini)carcpeB0135
Carg13023Cucurbita pepo (Zucchini)carcpeB0140
Carg13023Cucurbita pepo (Zucchini)carcpeB0143
Carg13023Wild cucumber (PI 183967)carcpiB0107