Cp4.1LG06g01680 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG06g01680
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionDNA-directed RNA polymerase
LocationCp4.1LG06 : 870837 .. 878051 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTACCCGCCAGGGCAAAGAATGCGGATTGAAGAGAAATATTGTAGAATCTCCAAAACCATGAGATTGATGATAATGTGAGTCACCATTAACAGTTATTTTTCCTCCGTTTTCCCAGAGAATTGGGTGAAAAACCTCAGTAGTTGCAAATTTGAGCTCCTTGTTTCAATTGAACAAGGGCATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCAATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTTCCGCCGGCGATTGACCTGGCTACCGCATCGGAGGATTACAACAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAGTAAGCAACCATTCGTTTGTTTATCGGCTTTTTGACTGAATTTGAGCTTCCTGGCAACTAGAAATCATGCAACCATGTTATTAAGTGAATTTTGATATTGTTATTGCTCAAATGAAAGCATGTTGCTCGAAGATGAACGGAACTATATAATTTGAGATTGAAATTTTAGAACTTTTACGGAACGTTCATCAATTTCCATAGCAAGCAAGAACAACAATTACGAGTTCTCTGTCAATTATCTCTTCAAAGTTCATTGATCTTTTATTCCATTTGATCAAATTTAGTTATAACTTGACGCACTTAAAAGACTTCGAATCTAATACATTGATGAAAAAAAGGCTCTTGCAAACGTACACACTCAACCTATGGTCCTTAGCCCATGGATAAGTCAATAGTTAACGTATGTTATTTCTGTTTTCCCATATTTCAACGATCAGGTTTTCGTAACATGTGTATTGTTATCTTTCAGTGAAAGTTTCAAGTTGTTATCATTTAGTATCTCCTTACCGACAAAATTTGAACGTTTTATAGCTGGTTTTCTTCCCTGGGATGGATGAGATATCTTGACTGTTTGCTTTGATCTTGTTAATTCACCGATGGTGCACCTATTATCTGAAAGACAATATGTTGTGTCTTGAATTGACTAGCATGGTGTGGTAGAGTTTAATCTCCATTCATTAATCATCTATAAGCCAACATGCGCAGATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAGACAATTCTTGATCGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGGTATATCTCTTTCCATATTTCTTTGTCTATTGTTTTTATCTTATTTTTAGAATTTGCATTTATATTAAATAAAATTACTAATGAGATACTCTAGCCTCTTTTCTGTTTCCTTGGATGAATGAAAGCTTTTGTCATGAACCCGGAAAAGAAATTAAATGTTCACAATTAAGTTTTTAATTGCTCCTGATGAAACATCTTGATTGTCGCTATTGATGAGATTGACTTCAGCAAGTCATGATTCATCCCTGAAACATTTGACTAGCTTAGCTTGTAATCCTAACATATTTGTCTATAATGTTTGACTTGAAAAGATATAAATTGTTACGGAACAGAACATGAATTGGAAGGGAAAACTTACTTTTCCTAATACACGTGATCTATATCGACTGTGTTTTTTTTTTCTTTTGTAAAAATACTTTGCCTGGGATTTATATGAAGACACTTCAAAGTAATTCTCAATGTACACAGTGAGAAATGTGGGCTTTGATAAGTGGCAACGGTTTGATATTTGTTGAAACATTGTATTTTCACTAGATTGTGTATACGTGATGCTGCCAAAAGGGTTATACCTCGACTTGAACTCCAATATCTTGCCATTAGAAAAGCGATTTTATGGGATGCCATTTTCATTTTTGAACCATTTTCTTTGAAATCATATTGAGCACTGGATACAAGCTCTGTCTCTGTCAACTTAATCATATTGTTGTGGTCGGCAGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTAGTTGATTTTTCGTATTGGAAGTGCATGGAGGGTCTGATCAGAAAAAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACGTAGACGCCATTTTTTTCGGTAATGAATGCAAGATCTGTTAATCATACTATTGTATCATCCAATTTCAGGAATTCTTTGAATTTCGAAGAATGAAATTAACCTACTACGCTTGTGTGGTTCTCGTGTTTAATGATTTGAAATGCGCGAATCAAGAAGAATATAGGCTGAATGTAGACTCTTGCTCGAGGAAGGTGCTAGCAAAATTCAATATTCGAGTCCTAACAGTTACCTCCAGTCCAGTTTTTGCTTAGTCTATAGTGGTTAACTGGTTAGCTACATTCCCTCGCTCTCTCTTTAGCAGGAATATATGCTCAAGATCCTTTGAACCTTGTAGCATTTTGTAGTTTGGCCGGTATGTATTAAAACTCTATTGAATTGGCATCAAGAACCCTTAAATTCTGTATGGAGTTCATATATTATGTTATTGTGAGTAAGAAAAAAATACAATGGCGCCCAAATGGGCATATTCTTGTATTCGACCATGGCTAACGCTAAAGTACTGCAACTGAGCTGCTACTCTGCTCGACTTCAGCGGAGTAGCTTTGGTCATGTAGGGAAATTCTCAGCCTTAACTTTGGATCTAAATTTTGTGTTTTGATCTTTCCATCCTTCATGGCATTACGTGTATGTCTTACAACTTTTGTAGATGAAAATTATGAAGGGTATTAAGTTTTTAACCTCCATGGTTATCTTGAATTTTAAAAAGTGAATATTGTAAAATAAACAATAGTATTAAAAATTGTAGCAAAACTCGGGGAAGTCGATCAACAAACATGATTCTCTCGGTAGTCAATCAATACAATTGAAACTCATAACCTTATGAGTTTTGACATGAAAAGTTATGACTCAGTGCTATATAGTAATAATTCTCTCAATTACCCAACTCGATTACAAAGAAAAGGGCTTTTAAAAAAAACGAACTTTCTCATTATATAAACAAATGCACGAAGAAAGTGATCAGTTTGGCTGAACATTCAAGCTTGTATTTGGTCAAGGAGGTTGCGCATCATCTACCTGTAGCTGAGAATCGGGTTCAGGTATGTAGCAATCCATGGCCACTACATCAACCAATATTTCAATACTGGAGAAATTGGCTAAGAAGGAAATTATCACATTCTTCATATTTTCCAGGCAGGCAGATTTTCTAGAACTGTTCCACCATCAGCAGCAGCAGCAGCAGCAGGAGGAGGTGCTAAAGTAATATTTTTAAGATCCTAAAAGTTCTTAGCAAGGATAGCCGGGAGAGCCTTCAATCTCTTTCCAGGATATCATCTTCCTACGACCCCTTCCTCTTAAGTACTCTGGCATGCTACCACTGACAGGTTTGTACAAGACAACAAATTTGATGAGACAATATATAGTTCTCTTGATCCAAATGCAGCATCTCAAGTTTACGGAGATTCACCTACAAAACCAAAAACACATATCAACTAAGTGAAACATTACCAGGTCAACAACCAGTATTCGAGCTCGGAAGAGATCAAATTCATAAAAGTGTCAGTATGTCATCACATACACCCATTTAGAAAAAGTACTGGTTAGTTACGTGCTTTTAAAAAATCTACAACATAAAAGAGCCTTTTCCATCGCATATACTTTCTAGATCATGTTTGTAAAGATCAGGACTGCAATGACAATGAGGTGTGTGAGAAGATATCAAAACAAACTTTCCTCCTTACCTCAGCTTCCATGATCTGACGTTCATCATACCAATCAGAGTTTTCACTCTCATCATGGTTTTCTCTTCAGAATTCATCTAGTAAAGATTCAAAGTGAAGAAAGGAGACCTAAGAGGGTACTCCATGCTGATTTTAATCTGCCAAAACGATATTGATGTCAACATTCAGAAAATCAATATAACATAATTCCTATAAAGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANTTTAAAATTTTCGACAGGTGAATCAATGTTCCTGGCCATAACAAGGCTTCCTTGGACTCATAATCCATCCATGTCTTTCTTGTTATGTAGTTGGAGGGAATAGATGCTGTATCATCTGCTGAAAGCTCAGTCTGCACAGGCTCATCCTTATCGCTGTTGAGATCTTGCATCAACTCATAATCTTCATCAGTTTATTGAAACTTAGTATCCTAGAGTAATTGGTTTGAGGTGTAATGCTTTTGGAAGTTAAAGTCAACTGTTTGGAAAGCTCGAGGTTGGGTGTTCTCGAGGGGGGAGTAACTTGAGTATTGTTAAAGATAGATGTCGATGAAACTAGAGCAGGAAGTTCCCCATCTTCGCTAGCACCGTCGATCTCTTCTCTTGAAATGCCAGATTTTTCAAACATATCAACACCTACAGGATCCTGAAATTTCTCTCTATCCATTGTAGTCAAAGATGATGACTGACTTGTAGGGTAACCTACGAGCGACCAACCTTTCAAACAGCATGAAGGTTGATGCCAAACCCATGAGACATCATAATAACATATCAGAACTGACCATTTAAGTTTTTCAAGTGAATCAAGCTGTTCCCTGTTAGTCAGTAGAAAAATCCCAATTTCTCAAACAAACCAAACCATACTTGGCTGAATCAGTGATCCTTCCATCAACGGAAAAATAATCCATTATATAAAATGCTGTAGAAGTAAAAGTAAACATGGCATATATAGTTTTCTGGAGAAAATAAATTGTTAATCACACAAGCATAGTGCATGAAATTGCAAGTGATCAGAGCAACAACAGATGGTCAATTTGATCACTATGCTACAAATCCATCTTCTATCAGTCCTCAAAGCCATTTATAATCTAAAACTTTGAATACAAATCAATGACTCACACAAGAGCAAGCTGAGCCTTTTTCCGAGAGCGTAATCTTTGCACAACTGTCTGTATTCGGATTTGCTGACGATACATTGAGAGGCCTGATACAATATCACTTCTAATAGTTTCACCACTGGCAGATTCTTGTGCACTCACCAGGGGTGGCAATTCTGGCAAAAAATCAATTCCAGCCAAATGTTGGGCCCACTTATATGGTCGAGAGGTTCTCTTGTCACTAAATGCAAGAGTTTCACCAACAACAAGCTTGGCTGACTGCATCATTTAGGACAAAATAATACATCATCAAGGTTTCCCCCTCTTTTTCGTTGAAAATGTAAAGTTGGGGCAGAACAGTAAGAACATAAACGCAAATTTCTGAATTCATACCTGGTGAGGCAGCTCAAGGCCAGTGTCATCAGGGAACAAGCTGCATAAGATGTTATTCTCAGGTCCTTCATGAGATCCTTCAATCCCAACACAAATAATGTTCAACTTTAACAGGCATTCAAACTTCACAGAAAGCAATTTCATTGACTTGGGTTCACAGGTTTCATTGTCATATATATGTAGGATGATCTTTAGCGGATGAACTTGATATATCCCTGCATGCTCAATGTTCACCTTAGCTGGAATCTTCTTTGGCCGTTTTTTCCTCCTTTGGCTATCATCATCTTCGTCAGGGGCATCATCCTCCAATTTGGAGTTCTCAGCATTGGTTGATGCACCTAAAATATTTGCAATGAAAGAATTACTCTCTTACAGGAAAAAAAGAAAAAAACAAATGAAGAAAGAGTTATCTGTGAATGTTGTTTTTGATATAGACTCTGCAATCCAAAAAAAGTAGTGTTCAGTTATCTCCAAATTGACATTATTTATAAGATAAATATGGTCTGGGATTTAGAATTGTGTGATGATTTCAATGAATAATAAATTCAATTCGTATGTATAGGCTATTACGTGACAAGATGATTTAAAAAGAAGTCATTTTGTAGCATATGCATCCAATTCAACTATCAAAAATTAAAACAATCTGACAATAAAAATACTATCATATATGATATAACTATTCAACTAATGGTCGTAGAGAAGATATACACCCAGGTACCAGTTTCCTCATTTGCTTGATGCCGTGCAAAAGCTTGAGCATCTTTGACAATTCCTACTATCTCCAACTCAATGTTTTCATTGAATGCTTCCTTTTGTGCCAAGAATTGTGAGTAGATTACATAAAGAGGAGGTGGAAGCAGCTCTGCTAGTTGGTGTTGCTTTAATTTCTTTGTCTGCAATATTCCCAACTGATTCTGTACGGGCAAGGAAGCCTTTTTCAAGGACTTGAGGTGTGAGGGAAGACTTGACATGAATTTCTTTCTATTAGCAATAACTTCAAGAAGGCTGTTCTTATGTTGTTCAAGTTCATCTCGCCGTTTGCGAAGTTCTTTGCGCTGGTAAAATGATGGATATTATTAATACACTCAACAGCAACAATGAAAAAAATCAATAAAAAAGAATCAACTATGTACATCCACGACCAAAAGGTGGAAAATTGGAACATTCAAATAAAAACCAAAAACATGGAAAACATCATAGATTCACCCATTCTAAAAAGGGAAAGATTTAAGCTCAGTTACGAGGTAAATTTGACGTCATAACTCAAATTATAATGTTTAGGATGTCTTTTGCAAGTAGTTAAGGACGCACAAGATGCTATATTTCCCGCAATTCTTAAAAATAGTAGTAAAGCCAATGGAGTCACCAATTTTTTTTTAGAACCACAGAATCGACCAAGAGGAAGGTGATGCCTCCTCAAAATTTTGTATATAACTTGAAGCTATTGCTTTTGTCCGTCCTAACCGAGTTATTGGTACCTTTAATTACCAGAAAAATTCTGCATCCGTGCTAATTAATTCAAAGAGAGTATGAACGACAACTAAAGATCACCTGGAAAAGCTCGAAGTGAAGCCTCTGCAGCATCAGATTGTGCGCGCTGTCCTTTGACCTTATGGAATTCCTTATGTCTTCGGGTGCATCCCGGAAAAACTCATCCTCAGACACAAGTTCACTATCAGAATACTTTGATTTGAAGTCTTTACAGGCCTTTATTGCTTTAACATAGTGACTCTTTTCATACATCAAGTTGTTAAGTTGCAGAGTCGTGA

mRNA sequence

CTACCCGCCAGGGCAAAGAATGCGGATTGAAGAGAAATATTGTAGAATCTCCAAAACCATGAGATTGATGATAATGTGAGTCACCATTAACAGTTATTTTTCCTCCGTTTTCCCAGAGAATTGGGTGAAAAACCTCAGTAGTTGCAAATTTGAGCTCCTTGTTTCAATTGAACAAGGGCATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCAATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTTCCGCCGGCGATTGACCTGGCTACCGCATCGGAGGATTACAACAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAGACAATTCTTGATCGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTAGTTGATTTTTCGTATTGGAAGTGCATGGAGGGTCTGATCAGAAAAAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACAGTCGTGA

Coding sequence (CDS)

ATGGTCCTGGCTATGGCCTCCATTTTGAAGCCACCGCCTCTTGTGCCCCTTCACTCCCTAAATCCAAACCTCCTCAACGCTTCACCAGTGATCGTATGTTTTCGTACGCACCCCATGACGTCGTTTCACCAATCCATTCGTGCCCTAAAAACTGGCCCTGAAGGCAGTAGAATTCGAAGCCACGAAGAATATAGTTCCGATTTGCTGCGAAAACCGGTTGTTCCGCCGGCGATTGACCTGGCTACCGCATCGGAGGATTACAACAGCAGTGAGGAGAGTGGAAACGGAGACGAGGAGGAAGAGGAATGGGTTGACTGGGAGGACAGGATTCTGGAGGAGACTGTTCCTCTAGTTGGCTTTGTTAGGATGGTTCTTCACTCTGGAAAATATGAAAGTGGGGATAGGTTGACCCCAGAGCACGAGAAGACAATTCTTGATCGGTTGCTTCCATATCATCCCGAGTGTGAGAAGAAGATTGGATGTGGGATTGATTATATCACGATTGGATATCATCCGAATTTTGAAAGGTCAAGATGTTTATTCATAGTCAGAAAAGATGGAGAGTTAGTTGATTTTTCGTATTGGAAGTGCATGGAGGGTCTGATCAGAAAAAACTATCCTCTTCATGCAGAAAGCTTTATTCTTCGGCATTTTCAGCGACAGTCGTGA

Protein sequence

MVLAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQS
Homology
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BLAST of Cp4.1LG06g01680 vs. Swiss-Prot
Match: DCL_SOLLC (Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-65
Identity = 116/177 (65.54%), Postives = 145/177 (81.92%), Query Frame = 1 

Query: 48  ALKTGPEGSRIRSHEEYSSDLLRKPVVPPAIDLATASEDY---NSSEESGNGDEEEEEWV 107
           A+KTG EG  IRS    +++LLRKPV+   ++  + SE+     S +E G    + E WV
Sbjct: 47  AVKTGSEGGGIRSD---NAELLRKPVISTELETTSESEELVKEESDDEVGKKSGDGEGWV 106

Query: 108 DWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGID 167
           DWED+ILE+TVPLVGFVRM+LHSGKY  GDRL+P+H++TIL RLLPYHPEC+KKIG G+D
Sbjct: 107 DWEDQILEDTVPLVGFVRMILHSGKYAIGDRLSPDHQRTILQRLLPYHPECDKKIGPGVD 166

Query: 168 YITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           YIT+GYHP+FE SRCLFIVRKDGE VDFSYWKC++GLIRKNYPL+A+SFILRHF+++
Sbjct: 167 YITVGYHPDFENSRCLFIVRKDGETVDFSYWKCIKGLIRKNYPLYADSFILRHFRKR 220

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BLAST of Cp4.1LG06g01680 vs. Swiss-Prot
Match: NRPE1_ARATH (DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-20
Identity = 41/114 (35.96%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 107  EDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYI 166
            E  +L +  P++  +R ++H   Y  GD ++ + +  +L+++L +HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 167  TIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQR 221
            T+  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F +
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

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BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match: A0A0A0L2D0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639820 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.9e-102
Identity = 176/219 (80.37%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHE 62
           +AMASILKPPP  P HSLNPN  N+SP+I+CF THP+ SFH S RALKTGPEG R+RSH+
Sbjct: 1   MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRLRSHQ 60

Query: 63  EYSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPV P A DLA  SED +SSEESGN DEEE EWVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVGPSAKDLAGPSEDDDSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLH+GKYE+GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHP+FE SRCLFI
Sbjct: 121 MVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           VRKDGE+VDFSYWKC++GLIRKNYPL+AESFILRHF+R+
Sbjct: 181 VRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRR 219

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BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match: A0A061FBM3_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_033826 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.1e-75
Identity = 139/217 (64.06%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 5   MASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHEEY 64
           MAS+LKPPP    + ++ +  ++SPVI+   +   TS      AL+TG +G RI S E Y
Sbjct: 1   MASVLKPPPYFHRNCISISS-SSSPVILSSPSQRTTSLQVRSCALRTGSDGGRIGSQESY 60

Query: 65  SSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMV 124
            +D+LRKP +    D    SE     EE   G  +  +W+DWEDRILE+TVPLVGFVRM+
Sbjct: 61  GADMLRKPSILTPKDSGGTSEQ----EEGSEGKRKRGKWIDWEDRILEDTVPLVGFVRMI 120

Query: 125 LHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVR 184
           +HSGKYESGDRL+PEHEKTILDRLLPYHPECEKKIGCGIDYIT+GYHP+FE SRCLFIVR
Sbjct: 121 IHSGKYESGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFEGSRCLFIVR 180

Query: 185 KDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           KDGEL+DFSYWKC++GLIRKNYPL+A+SFILRHF+R+
Sbjct: 181 KDGELIDFSYWKCIKGLIRKNYPLYADSFILRHFRRR 212

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BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match: W9SA48_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009556 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 6.9e-75
Identity = 147/228 (64.47%), Postives = 175/228 (76.75%), Query Frame = 1 

Query: 5   MASILKPPPLVP-LHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEG--SRIRSH 64
           MA I  PPPL+  LH    +  + SPV + F     TSF   + ALKTG +G  SRI S 
Sbjct: 1   MAFISNPPPLLNNLHRHTLSHHHYSPVTLSFPFRATTSFPARVGALKTGSDGGGSRIGSQ 60

Query: 65  EEYSSDLLRKPVVPPAIDLATASEDYNSSEES--------GNGDEEEEEWVDWEDRILEE 124
           E +  DLLRKPVV P  DLA  SE+    E          G+ DEEE++WVDWED+ILE+
Sbjct: 61  ELFGPDLLRKPVVSPRKDLAGISEEEKEIERKRNYGGGGGGDDDEEEDKWVDWEDKILED 120

Query: 125 TVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPN 184
           TVPLVGFVRM+LHS KYESGDRL+PEHEKTIL+RLLP+HPE EKKIGCGIDYIT+GYHP+
Sbjct: 121 TVPLVGFVRMILHSEKYESGDRLSPEHEKTILERLLPFHPEFEKKIGCGIDYITVGYHPD 180

Query: 185 FERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           FERSRCLFIV+KDG+LVDFSYWKC++GLIRKNYPL+A+SFILRHF+++
Sbjct: 181 FERSRCLFIVQKDGKLVDFSYWKCIKGLIRKNYPLYADSFILRHFRQR 228

[Close]
BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match: B9R7B7_RICCO (DCL protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1590270 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.9e-72
Identity = 140/221 (63.35%), Postives = 174/221 (78.73%), Query Frame = 1 

Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTH-PMTSFHQSIRALKTGPEGSRIRSH 62
           + MAS+ KPPP +  H  NP  L  SPVI+ F  H   TSF+  I ALKTG +GS     
Sbjct: 1   MTMASLSKPPPCLHGHYSNPISLYFSPVILSFPFHRTTTSFNSRIFALKTGSDGS----- 60

Query: 63  EEYSSDLLRKPVVPPAIDLATASEDY-NSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 122
                DLLRKP+VP   +L+  S+D  +S+ +  N D+E++E VDWED+ILE+TVPLVGF
Sbjct: 61  -----DLLRKPIVPSEKELSGISDDEEDSNRKRDNKDKEDDELVDWEDQILEDTVPLVGF 120

Query: 123 VRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCL 182
           VRM+LHSGKYE+GDRL+PEHE+TI++RLLP+HPECEKKIG GIDYIT+G+H  FE SRCL
Sbjct: 121 VRMILHSGKYENGDRLSPEHERTIVERLLPFHPECEKKIGPGIDYITVGHHTEFENSRCL 180

Query: 183 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           FIVRKDG+LVDFSYWKC++GLIRKNYPL+A+SFILRHF+R+
Sbjct: 181 FIVRKDGKLVDFSYWKCIKGLIRKNYPLYADSFILRHFRRR 211

[Close]
BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match: A0A0D2R0L6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020200 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.1e-71
Identity = 135/218 (61.93%), Postives = 162/218 (74.31%), Query Frame = 1 

Query: 5   MASILKPPPLVPLHSLN-PNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHEE 64
           MASIL PPP    H  + P  +++SPVI+ +     TS     +AL+T  +G +I S E 
Sbjct: 1   MASILNPPPPPYFHRTSMPTSVSSSPVILSYPFLKTTSLQVRFKALRTWSDGGKIGSQEA 60

Query: 65  YSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRM 124
           Y +D LRKP   P  D    S+     EE   G     EW DWEDRILE+TVPLVGFVRM
Sbjct: 61  YGADFLRKPSTVPKKD----SDGILEEEEGSEGKRNRGEWTDWEDRILEDTVPLVGFVRM 120

Query: 125 VLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFIV 184
           ++HSGKY +GDRL+PEHE+TIL+RLLPYHPE EKKIGCGIDYIT+GYHP+F  SRCLFIV
Sbjct: 121 IIHSGKYGAGDRLSPEHERTILERLLPYHPEFEKKIGCGIDYITVGYHPDFVGSRCLFIV 180

Query: 185 RKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           RKDGELVDFSYWKC++GLIRKNYPL+A+SFILRHF+R+
Sbjct: 181 RKDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRRR 214

[Close]
BLAST of Cp4.1LG06g01680 vs. TAIR10
Match: AT1G45230.1 (AT1G45230.1 Protein of unknown function (DUF3223))

HSP 1 Score: 250.4 bits (638), Expect = 1.1e-66
Identity = 114/196 (58.16%), Postives = 151/196 (77.04%), Query Frame = 1 

Query: 26  NASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHEEYSSDLLRKPVVPPAIDLATASE 85
           ++SP+ + F     TS    +RAL+T  +G++I + E Y S+LLR+P +        + E
Sbjct: 27  SSSPLCLYFPRGDSTSLRPRVRALRTESDGAKIGNSESYGSELLRRPRI-------ASEE 86

Query: 86  DYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTIL 145
                EE    + E +E+VDWED+ILE TVPLVGFVRM+LHSGKY + DRL+PEHE+TI+
Sbjct: 87  SSEEEEEEEEENSEGDEFVDWEDKILEVTVPLVGFVRMILHSGKYANRDRLSPEHERTII 146

Query: 146 DRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKN 205
           + LLPYHPECEKKIGCGIDYI +G+HP+FE SRC+FIVRKDGE+VDFSYWKC++GLI+K 
Sbjct: 147 EMLLPYHPECEKKIGCGIDYIMVGHHPDFESSRCMFIVRKDGEVVDFSYWKCIKGLIKKK 206

Query: 206 YPLHAESFILRHFQRQ 222
           YPL+A+SFILRHF+++
Sbjct: 207 YPLYADSFILRHFRKR 215

[Close]
BLAST of Cp4.1LG06g01680 vs. TAIR10
Match: AT3G46630.1 (AT3G46630.1 Protein of unknown function (DUF3223))

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 59/126 (46.83%), Postives = 81/126 (64.29%), Query Frame = 1 

Query: 97  DEEEEEWVDWEDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECE 156
           D +  +W + E  IL +  P+    + +LHS +Y  G+RL  E EK ++++LLPYHP  +
Sbjct: 81  DPDYRKWKNLEAEILRDIEPISLLAKEILHSDRYLDGERLDFEDEKIVMEKLLPYHPYSK 140

Query: 157 KKIGCGIDYITIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILR 216
            KIGCG+D+I +  HP F  SRCLF+VR DG  +DFSY KC+   +R  YP HAE FI  
Sbjct: 141 DKIGCGLDFIMVDRHPQFRHSRCLFVVRTDGGWIDFSYQKCLRAYVRDKYPSHAERFIRE 200

Query: 217 HFQRQS 223
           HF+R S
Sbjct: 201 HFKRAS 206

[Close]
BLAST of Cp4.1LG06g01680 vs. TAIR10
Match: AT2G40030.1 (AT2G40030.1 nuclear RNA polymerase D1B)

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 41/114 (35.96%), Postives = 68/114 (59.65%), Query Frame = 1 

Query: 107  EDRILEETVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYI 166
            E  +L +  P++  +R ++H   Y  GD ++ + +  +L+++L +HP+ E K+G G+D+I
Sbjct: 1736 EQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETKLGSGVDFI 1795

Query: 167  TIGYHPNFERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQR 221
            T+  H  F  SRC F+V  DG   DFSY K +   + K YP  AE FI ++F +
Sbjct: 1796 TVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKYFTK 1849

[Close]
BLAST of Cp4.1LG06g01680 vs. TAIR10
Match: AT5G62440.1 (AT5G62440.1 Protein of unknown function (DUF3223))

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-07
Identity = 39/143 (27.27%), Postives = 62/143 (43.36%), Query Frame = 1 

Query: 76  PAIDLATASEDYNSSEESGNGDEEEEEWVDWEDR----------------ILEETVPLVG 135
           P  +      +   +EE  NG E +++ V  E++                + +  V  + 
Sbjct: 30  PKAETGDEKREREETEEEENGGESKKQKVGEEEKSGPVKLGPKEFVTSVAMFDYFVKFLH 89

Query: 136 FVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRC 195
           F    L   KYE            +LD +   H E EKKIG GI    +  HP + +SRC
Sbjct: 90  FWPTDLDVNKYE---------HMVLLDLIKKGHSEPEKKIGGGIKTFQVRTHPMW-KSRC 149

Query: 196 LFIVRKDGELVDFSYWKCMEGLI 203
            F+VR+D    DFS+ KC++ ++
Sbjct: 150 FFLVREDDTADDFSFRKCVDQIL 162

[Close]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match: gi|449447003|ref|XP_004141259.1| (PREDICTED: protein DCL, chloroplastic [Cucumis sativus])

HSP 1 Score: 379.0 bits (972), Expect = 5.6e-102
Identity = 176/219 (80.37%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHE 62
           +AMASILKPPP  P HSLNPN  N+SP+I+CF THP+ SFH S RALKTGPEG R+RSH+
Sbjct: 1   MAMASILKPPPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGIRLRSHQ 60

Query: 63  EYSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPV P A DLA  SED +SSEESGN DEEE EWVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVGPSAKDLAGPSEDDDSSEESGNEDEEEVEWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLH+GKYE+GDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHP+FE SRCLFI
Sbjct: 121 MVLHTGKYENGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           VRKDGE+VDFSYWKC++GLIRKNYPL+AESFILRHF+R+
Sbjct: 181 VRKDGEMVDFSYWKCIKGLIRKNYPLYAESFILRHFRRR 219

[Close]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match: gi|659103276|ref|XP_008452556.1| (PREDICTED: protein DCL, chloroplastic [Cucumis melo])

HSP 1 Score: 377.5 bits (968), Expect = 1.6e-101
Identity = 177/219 (80.82%), Postives = 198/219 (90.41%), Query Frame = 1 

Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHE 62
           +AMASIL   P  P HSLNPN  N+SP+I+CF THP+ SFH S RALKTGPEGSRIRSH+
Sbjct: 1   MAMASILTLLPFPPFHSLNPNFFNSSPLILCFPTHPINSFHPSTRALKTGPEGSRIRSHQ 60

Query: 63  EYSSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVR 122
           EYSSDLLRKPVVPPA DLA  SED +SSEESGN +EEE +WVDWED+ILE+TVPLVGFVR
Sbjct: 61  EYSSDLLRKPVVPPAKDLAGPSEDDDSSEESGNDEEEEVDWVDWEDKILEDTVPLVGFVR 120

Query: 123 MVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFI 182
           MVLH+GKYESGDRL PEHEKTIL+RLLPYHPE EKKIGCG+DYIT+GYHP+FE SRCLFI
Sbjct: 121 MVLHTGKYESGDRLRPEHEKTILERLLPYHPESEKKIGCGVDYITVGYHPDFESSRCLFI 180

Query: 183 VRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           VRKDGELVDFSYWKC++GLIRKNYPL+AESFILRHF+R+
Sbjct: 181 VRKDGELVDFSYWKCIKGLIRKNYPLYAESFILRHFRRR 219

[Close]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match: gi|590592205|ref|XP_007017215.1| (Uncharacterized protein isoform 1 [Theobroma cacao])

HSP 1 Score: 289.3 bits (739), Expect = 5.8e-75
Identity = 139/217 (64.06%), Postives = 169/217 (77.88%), Query Frame = 1 

Query: 5   MASILKPPPLVPLHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEGSRIRSHEEY 64
           MAS+LKPPP    + ++ +  ++SPVI+   +   TS      AL+TG +G RI S E Y
Sbjct: 1   MASVLKPPPYFHRNCISISS-SSSPVILSSPSQRTTSLQVRSCALRTGSDGGRIGSQESY 60

Query: 65  SSDLLRKPVVPPAIDLATASEDYNSSEESGNGDEEEEEWVDWEDRILEETVPLVGFVRMV 124
            +D+LRKP +    D    SE     EE   G  +  +W+DWEDRILE+TVPLVGFVRM+
Sbjct: 61  GADMLRKPSILTPKDSGGTSEQ----EEGSEGKRKRGKWIDWEDRILEDTVPLVGFVRMI 120

Query: 125 LHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCLFIVR 184
           +HSGKYESGDRL+PEHEKTILDRLLPYHPECEKKIGCGIDYIT+GYHP+FE SRCLFIVR
Sbjct: 121 IHSGKYESGDRLSPEHEKTILDRLLPYHPECEKKIGCGIDYITVGYHPDFEGSRCLFIVR 180

Query: 185 KDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           KDGEL+DFSYWKC++GLIRKNYPL+A+SFILRHF+R+
Sbjct: 181 KDGELIDFSYWKCIKGLIRKNYPLYADSFILRHFRRR 212

[Close]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match: gi|703159201|ref|XP_010112190.1| (hypothetical protein L484_009556 [Morus notabilis])

HSP 1 Score: 288.5 bits (737), Expect = 9.9e-75
Identity = 147/228 (64.47%), Postives = 175/228 (76.75%), Query Frame = 1 

Query: 5   MASILKPPPLVP-LHSLNPNLLNASPVIVCFRTHPMTSFHQSIRALKTGPEG--SRIRSH 64
           MA I  PPPL+  LH    +  + SPV + F     TSF   + ALKTG +G  SRI S 
Sbjct: 1   MAFISNPPPLLNNLHRHTLSHHHYSPVTLSFPFRATTSFPARVGALKTGSDGGGSRIGSQ 60

Query: 65  EEYSSDLLRKPVVPPAIDLATASEDYNSSEES--------GNGDEEEEEWVDWEDRILEE 124
           E +  DLLRKPVV P  DLA  SE+    E          G+ DEEE++WVDWED+ILE+
Sbjct: 61  ELFGPDLLRKPVVSPRKDLAGISEEEKEIERKRNYGGGGGGDDDEEEDKWVDWEDKILED 120

Query: 125 TVPLVGFVRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPN 184
           TVPLVGFVRM+LHS KYESGDRL+PEHEKTIL+RLLP+HPE EKKIGCGIDYIT+GYHP+
Sbjct: 121 TVPLVGFVRMILHSEKYESGDRLSPEHEKTILERLLPFHPEFEKKIGCGIDYITVGYHPD 180

Query: 185 FERSRCLFIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           FERSRCLFIV+KDG+LVDFSYWKC++GLIRKNYPL+A+SFILRHF+++
Sbjct: 181 FERSRCLFIVQKDGKLVDFSYWKCIKGLIRKNYPLYADSFILRHFRQR 228

[Close]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match: gi|255538290|ref|XP_002510210.1| (PREDICTED: protein DCL, chloroplastic [Ricinus communis])

HSP 1 Score: 280.4 bits (716), Expect = 2.7e-72
Identity = 140/221 (63.35%), Postives = 174/221 (78.73%), Query Frame = 1 

Query: 3   LAMASILKPPPLVPLHSLNPNLLNASPVIVCFRTH-PMTSFHQSIRALKTGPEGSRIRSH 62
           + MAS+ KPPP +  H  NP  L  SPVI+ F  H   TSF+  I ALKTG +GS     
Sbjct: 1   MTMASLSKPPPCLHGHYSNPISLYFSPVILSFPFHRTTTSFNSRIFALKTGSDGS----- 60

Query: 63  EEYSSDLLRKPVVPPAIDLATASEDY-NSSEESGNGDEEEEEWVDWEDRILEETVPLVGF 122
                DLLRKP+VP   +L+  S+D  +S+ +  N D+E++E VDWED+ILE+TVPLVGF
Sbjct: 61  -----DLLRKPIVPSEKELSGISDDEEDSNRKRDNKDKEDDELVDWEDQILEDTVPLVGF 120

Query: 123 VRMVLHSGKYESGDRLTPEHEKTILDRLLPYHPECEKKIGCGIDYITIGYHPNFERSRCL 182
           VRM+LHSGKYE+GDRL+PEHE+TI++RLLP+HPECEKKIG GIDYIT+G+H  FE SRCL
Sbjct: 121 VRMILHSGKYENGDRLSPEHERTIVERLLPFHPECEKKIGPGIDYITVGHHTEFENSRCL 180

Query: 183 FIVRKDGELVDFSYWKCMEGLIRKNYPLHAESFILRHFQRQ 222
           FIVRKDG+LVDFSYWKC++GLIRKNYPL+A+SFILRHF+R+
Sbjct: 181 FIVRKDGKLVDFSYWKCIKGLIRKNYPLYADSFILRHFRRR 211

The following BLAST results are available for this feature:
BLAST of Cp4.1LG06g01680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DCL_SOLLC1.1e-6565.54Protein DCL, chloroplastic OS=Solanum lycopersicum GN=DCL PE=2 SV=1[more]
NRPE1_ARATH1.8e-2035.96DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV... [more]
BLAST of Cp4.1LG06g01680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2D0_CUCSA3.9e-10280.37Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639820 PE=4 SV=1[more]
A0A061FBM3_THECC4.1e-7564.06Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_033826 PE=4 SV=1[more]
W9SA48_9ROSA6.9e-7564.47Uncharacterized protein OS=Morus notabilis GN=L484_009556 PE=4 SV=1[more]
B9R7B7_RICCO1.9e-7263.35DCL protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1590270 PE=4 SV=1[more]
A0A0D2R0L6_GOSRA2.1e-7161.93Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020200 PE=4 SV=1[more]
BLAST of Cp4.1LG06g01680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G45230.11.1e-6658.16 Protein of unknown function (DUF3223)[more]
AT3G46630.11.3e-3246.83 Protein of unknown function (DUF3223)[more]
AT2G40030.11.0e-2135.96 nuclear RNA polymerase D1B[more]
AT5G62440.12.5e-0727.27 Protein of unknown function (DUF3223)[more]
BLAST of Cp4.1LG06g01680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447003|ref|XP_004141259.1|5.6e-10280.37PREDICTED: protein DCL, chloroplastic [Cucumis sativus][more]
gi|659103276|ref|XP_008452556.1|1.6e-10180.82PREDICTED: protein DCL, chloroplastic [Cucumis melo][more]
gi|590592205|ref|XP_007017215.1|5.8e-7564.06Uncharacterized protein isoform 1 [Theobroma cacao][more]
gi|703159201|ref|XP_010112190.1|9.9e-7564.47hypothetical protein L484_009556 [Morus notabilis][more]
gi|255538290|ref|XP_002510210.1|2.7e-7263.35PREDICTED: protein DCL, chloroplastic [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021602Protein of unknown function DUF3223
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009308 amine metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009507 chloroplast
molecular_function GO:0005507 copper ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g01680.1Cp4.1LG06g01680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021602Protein of unknown function DUF3223PFAMPF11523DUF3223coord: 123..198
score: 2.1
NoneNo IPR availableGENE3DG3DSA:3.10.450.40coord: 101..206
score: 1.8
NoneNo IPR availablePANTHERPTHR33415FAMILY NOT NAMEDcoord: 1..220
score: 6.5E
NoneNo IPR availablePANTHERPTHR33415:SF2SUBFAMILY NOT NAMEDcoord: 1..220
score: 6.5E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG06g01680Cucsa.352520Cucumber (Gy14) v1cgycpeB0924
Cp4.1LG06g01680Cucsa.352210Cucumber (Gy14) v1cgycpeB0923
Cp4.1LG06g01680CmaCh09G002290Cucurbita maxima (Rimu)cmacpeB060
Cp4.1LG06g01680CmaCh01G018370Cucurbita maxima (Rimu)cmacpeB507
Cp4.1LG06g01680CmoCh01G018960Cucurbita moschata (Rifu)cmocpeB465
Cp4.1LG06g01680CmoCh09G002220Cucurbita moschata (Rifu)cmocpeB034
Cp4.1LG06g01680Cla020670Watermelon (97103) v1cpewmB765
Cp4.1LG06g01680Csa4G639820Cucumber (Chinese Long) v2cpecuB782
Cp4.1LG06g01680Csa4G641650Cucumber (Chinese Long) v2cpecuB791
Cp4.1LG06g01680MELO3C016755Melon (DHL92) v3.5.1cpemeB734
Cp4.1LG06g01680MELO3C016785Melon (DHL92) v3.5.1cpemeB733
Cp4.1LG06g01680ClCG05G019910Watermelon (Charleston Gray)cpewcgB700
Cp4.1LG06g01680CSPI04G24100Wild cucumber (PI 183967)cpecpiB784
Cp4.1LG06g01680Lsi04G015610Bottle gourd (USVL1VR-Ls)cpelsiB638
Cp4.1LG06g01680MELO3C016785.2Melon (DHL92) v3.6.1cpemedB866
Cp4.1LG06g01680MELO3C016755.2Melon (DHL92) v3.6.1cpemedB867
Cp4.1LG06g01680CsaV3_4G034700Cucumber (Chinese Long) v3cpecucB0977
Cp4.1LG06g01680CsaV3_4G034350Cucumber (Chinese Long) v3cpecucB0969
Cp4.1LG06g01680Bhi09G002729Wax gourdcpewgoB0997
Cp4.1LG06g01680CsGy4G022380Cucumber (Gy14) v2cgybcpeB562
Cp4.1LG06g01680Carg27331Silver-seed gourdcarcpeB1168
Cp4.1LG06g01680Carg10606Silver-seed gourdcarcpeB1083
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g01680Cp4.1LG02g06820Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g01680Cucurbita pepo (Zucchini)cpecpeB099
Cp4.1LG06g01680Cucurbita pepo (Zucchini)cpecpeB136
Cp4.1LG06g01680Cucurbita pepo (Zucchini)cpecpeB422
Cp4.1LG06g01680Cucurbita pepo (Zucchini)cpecpeB497
Cp4.1LG06g01680Cucurbita pepo (Zucchini)cpecpeB510
Cp4.1LG06g01680Cucurbita maxima (Rimu)cmacpeB199
Cp4.1LG06g01680Cucurbita maxima (Rimu)cmacpeB684
Cp4.1LG06g01680Cucurbita maxima (Rimu)cmacpeB787
Cp4.1LG06g01680Cucurbita maxima (Rimu)cmacpeB888
Cp4.1LG06g01680Cucurbita moschata (Rifu)cmocpeB172
Cp4.1LG06g01680Cucurbita moschata (Rifu)cmocpeB637
Cp4.1LG06g01680Cucurbita moschata (Rifu)cmocpeB740
Cp4.1LG06g01680Cucurbita moschata (Rifu)cmocpeB827
Cp4.1LG06g01680Wild cucumber (PI 183967)cpecpiB773
Cp4.1LG06g01680Cucumber (Chinese Long) v2cpecuB771
Cp4.1LG06g01680Bottle gourd (USVL1VR-Ls)cpelsiB644
Cp4.1LG06g01680Watermelon (Charleston Gray)cpewcgB708
Cp4.1LG06g01680Watermelon (97103) v1cpewmB756
Cp4.1LG06g01680Watermelon (97103) v1cpewmB772
Cp4.1LG06g01680Melon (DHL92) v3.5.1cpemeB717
Cp4.1LG06g01680Cucumber (Gy14) v2cgybcpeB254
Cp4.1LG06g01680Cucumber (Gy14) v2cgybcpeB868
Cp4.1LG06g01680Melon (DHL92) v3.6.1cpemedB852
Cp4.1LG06g01680Melon (DHL92) v3.6.1cpemedB873
Cp4.1LG06g01680Silver-seed gourdcarcpeB0267
Cp4.1LG06g01680Silver-seed gourdcarcpeB0570
Cp4.1LG06g01680Silver-seed gourdcarcpeB1140
Cp4.1LG06g01680Cucumber (Chinese Long) v3cpecucB0957
Cp4.1LG06g01680Cucumber (Chinese Long) v3cpecucB0982
Cp4.1LG06g01680Wax gourdcpewgoB0976