Cp4.1LG06g00080 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG06g00080
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAT hook motif DNA-binding family protein isoform 1
LocationCp4.1LG06 : 8625 .. 10872 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTTTTTCTCCTCCTCCCACCTCCGTGCCAAATTGTTTGAAGAAAGCCAGAGGGAGACCCCTGGCTCTACCAACAAGAAGCAGGGTGATACTCTGGGTAACTTACTTATTCCGCATCCCTTCGTAATTAATTGGCGTCTAGTGTTGGTACTTAACTGATTCTGGTTCTTGATATCTAAGATAGTTGCATTGTGTTCGTCCACATTGCTTTCTCTATCACTTTGGTCATCCATATCACTTTCATCATTGATTTGCATGTACAGAACTTTCAAAATCTTTAGCCTCTGCTGCAAATGTAGTTAAAATTGGGTGTCTTCCCTTTTAATGCAGAGTTCTTATTCTTGGGGGCTCGATTTGGACTCTAATATTGTGATTACAGCTTGAAATATTGTACAGTTGTAATTGTAGAGTCATCAGGAGTTGGATTTACCCCACATGTCATCACCGTGGAAGCTGGAGAGGTTCATATTTTTGTGTGTTTTACTTTGCTGAAATTGAATAGTTGAGTGAGAATAAGAAGACGTAAATGTTTTCCAGGATGTCTGTTCGAAAATAATGTCATTTTCCCAGAATGGGCCTTGAGCTGTTTGTATCCTTACAGCAAATGGTGCAATATCCAATGTGACTCCAATATCCAATAGTGTCCCCATCTTCATGCCTGTAAATAGACCTTCTTCTTTCCTTTTCTTAAACCAGATGGAATTTATGTGTTGTACAGGGGCGATTTGAGATTTTGTCTCTATCTGGGTCATATCTCTTCTCCGAGAATGACGGTCAGCGGAGTCGAACTGGAGGTCTGAGTGTTTCATTATCTGGACCAGACGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCTGCAACTCCTGTTCAGGTACATTAACTTTCCCCATGAGAGCGTTCATATACATCTTTTATAGCCCTATGTATGGTGTTATTAGAATGCTTTTCATTGTTACTATCGGATTACCAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACATGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGCGCAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACAGGACTTTTCTTCTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCACCAACATGCAGTAGAAAGGCTATAAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCAGCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTTGGTGTCACCATTGGTACATACCCCAGCTCCTC

mRNA sequence

ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGAAACTCGAGGTTGCTTCGTTAACTCACTTGATTTGTTAACATGGCGGGGGCTAACATGGAATCTGGTGTTCTGTTGTCTAATGTTACTCTAGTTCCAGTTTGAGTTGGCTTGGAAAGAACAGACGCGCAATAGTTGTGTTTTGTTTTGATAGTGATGGCATTACAAATCAAATGATGTGTTCATTTCAATTATTGCGCTACTACTTTGATGCTAAATAGTCTCAAAGAGAGAGTATTATTACAAACAGGACTTTTCTTCTTCAGCTATCTCTCGTTTGCTAACAACACATAGGGACTGCCCCTTTAACTCCTTGCTCTTTTCAACAATAAGCGCAAGGAGAAGAAGCCTAAAGCAAAAGTCTGCCAAAACCATCCCCTTGAGTTAGCAGGATCCACCTTTCTGGCTAAGAACCATGCATAAGTACCCTCACCAACATGCAGTAGAAAGGCTATAAGAAACACCATTCTCACCACTTGAATTGACCTAAAGAAGAAAAGGCTGATGCCTTTGAAAAATGGAACAGGTCCTACGTCTGGAAGGAAAGCAGCACAAAACATGATGCTCATTCCGACAACACAGAACAGCCACGCATATATTGTTGGCCCATCGAGACTCTTCCTTTTTCTCTCCTGCCAATATGAGATGGTCGCAGCCATGCCCTCCTTTGGTGTCACCATTGGTACATACCCCAGCTCCTC

Coding sequence (CDS)

ATGATCAGCCGCAAACCCTTCAACATGGGTCTCCAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCTTTGGCACCGACGGCCTGTACAACCCCGCTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAAGGTTTCGTTGACATGAATGCGCAAGGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCTAGGAAGTATGACCATATGACCCAGATGGCAGTATGGCGCTGCCTCCTGCAGTTCCCTCTGCCGTCGCAACTCAGTCCAGTGGAGGTAGTCATGGGGAGCTTCATCACTGATGGGGGGCACAAGGAGTTGAGGCAAGCAGACCAAATAGAACAGCCGCCTTTTACTGCACCCCATAAACTTGCTCCCATCCGTGCTGGAATGACGGGAACTAGCAGCAGCCCGCCATCACTGGGTACTCTCAGTGAATCCTCGGGAGGGCCTGGGAGTCCATTTAATCACAGTGCTGGAGCCTGCAATAATAACACCGTATCTTGGATGTGA

Protein sequence

MISRKPFNMGLQMSSVQSQQPVLPGMHSPFGTDGLYNPAAAASPTYQPSIVGVTGNAGAGESAREGFVDMNAQGEPVKRKRGRPRKYDHMTQMAVWRCLLQFPLPSQLSPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESSGGPGSPFNHSAGACNNNTVSWM
BLAST of Cp4.1LG06g00080 vs. TrEMBL
Match: A0A0A0L0T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.4e-30
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           SPV+VV+GSF+TDGGHKELRQ +QIEQPP +APHKLAPIRAGMTG +SSPPS GTLSESS
Sbjct: 271 SPVQVVVGSFVTDGGHKELRQVNQIEQPPVSAPHKLAPIRAGMTG-ASSPPSRGTLSESS 330

Query: 169 GGPGSPFNHSAGACNNNTVSW 190
           GGPGSPFN SAGACNNNT+ W
Sbjct: 331 GGPGSPFNQSAGACNNNTIPW 350

BLAST of Cp4.1LG06g00080 vs. TrEMBL
Match: D7UDF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00700 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAG--MTGTSSSPPSLGTLSE 168
           SPV+VV+GSFI DG  KE + A Q+E  P +AP K+AP+  G  +TGTS SPPS GTLSE
Sbjct: 268 SPVQVVVGSFIADG-RKESKSASQVE--PSSAPPKIAPVGGGGGVTGTS-SPPSRGTLSE 327

Query: 169 SSGGPGSPFNHSAGACNNN 186
           SSGGPGSP N S GACNN+
Sbjct: 328 SSGGPGSPLNQSTGACNNS 342

BLAST of Cp4.1LG06g00080 vs. TrEMBL
Match: A5AT53_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030792 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.5e-14
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAG--MTGTSSSPPSLGTLSE 168
           SPV+VV+GSFI DG  KE + A Q+E  P +AP K+AP+  G  +TGTS SPPS GTLSE
Sbjct: 268 SPVQVVVGSFIADG-RKESKSASQVE--PSSAPPKIAPVGGGGGVTGTS-SPPSRGTLSE 327

Query: 169 SSGGPGSPFNHSAGACNNN 186
           SSGGPGSP N S GACNN+
Sbjct: 328 SSGGPGSPLNQSTGACNNS 342

BLAST of Cp4.1LG06g00080 vs. TrEMBL
Match: V4T682_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001729mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           +PV+VV+GSF+ DG  KE + + ++E  P   P KLAP   G      SPPS GTLSESS
Sbjct: 258 TPVQVVVGSFLADG-RKESKSSHRMESLP--VPPKLAP--GGQPAGQCSPPSRGTLSESS 317

Query: 169 GGPGSPFNHSAGACNNN 186
           GGPGSP NHS GACNNN
Sbjct: 318 GGPGSPLNHSTGACNNN 329

BLAST of Cp4.1LG06g00080 vs. TrEMBL
Match: A0A067GZU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019329mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.6e-11
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           +PV+VV+GSF+ DG  KE + + ++E  P   P KLAP   G      SPPS GTLSESS
Sbjct: 258 TPVQVVVGSFLADG-RKESKSSHRMESLP--VPPKLAP--GGQPAGQCSPPSRGTLSESS 317

Query: 169 GGPGSPFNHSAGACNNN 186
           GGPGSP NHS GACNNN
Sbjct: 318 GGPGSPLNHSTGACNNN 329

BLAST of Cp4.1LG06g00080 vs. NCBI nr
Match: gi|449455639|ref|XP_004145559.1| (PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 6.4e-30
Identity = 68/81 (83.95%), Postives = 75/81 (92.59%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           SPV+VV+GSF+TDGGHKELRQ +QIEQPP +APHKLAPIRAGMTG +SSPPS GTLSESS
Sbjct: 271 SPVQVVVGSFVTDGGHKELRQVNQIEQPPVSAPHKLAPIRAGMTG-ASSPPSRGTLSESS 330

Query: 169 GGPGSPFNHSAGACNNNTVSW 190
           GGPGSPFN SAGACNNNT+ W
Sbjct: 331 GGPGSPFNQSAGACNNNTIPW 350

BLAST of Cp4.1LG06g00080 vs. NCBI nr
Match: gi|659105097|ref|XP_008453016.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 7.1e-29
Identity = 67/81 (82.72%), Postives = 74/81 (91.36%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           SPV+VV+GSF+TD GHKELRQ +QIEQPP +APHKLAPIRAGMTG +SSPPS GTLSESS
Sbjct: 271 SPVQVVVGSFVTDVGHKELRQVNQIEQPPVSAPHKLAPIRAGMTG-ASSPPSRGTLSESS 330

Query: 169 GGPGSPFNHSAGACNNNTVSW 190
           GGPGSPFN SAGACNNNT+ W
Sbjct: 331 GGPGSPFNQSAGACNNNTIPW 350

BLAST of Cp4.1LG06g00080 vs. NCBI nr
Match: gi|147809818|emb|CAN64876.1| (hypothetical protein VITISV_030792 [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 6.4e-14
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAG--MTGTSSSPPSLGTLSE 168
           SPV+VV+GSFI DG  KE + A Q+E  P +AP K+AP+  G  +TGTS SPPS GTLSE
Sbjct: 268 SPVQVVVGSFIADG-RKESKSASQVE--PSSAPPKIAPVGGGGGVTGTS-SPPSRGTLSE 327

Query: 169 SSGGPGSPFNHSAGACNNN 186
           SSGGPGSP N S GACNN+
Sbjct: 328 SSGGPGSPLNQSTGACNNS 342

BLAST of Cp4.1LG06g00080 vs. NCBI nr
Match: gi|225457646|ref|XP_002275328.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera])

HSP 1 Score: 86.3 bits (212), Expect = 6.4e-14
Identity = 51/79 (64.56%), Postives = 60/79 (75.95%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAG--MTGTSSSPPSLGTLSE 168
           SPV+VV+GSFI DG  KE + A Q+E  P +AP K+AP+  G  +TGTS SPPS GTLSE
Sbjct: 268 SPVQVVVGSFIADG-RKESKSASQVE--PSSAPPKIAPVGGGGGVTGTS-SPPSRGTLSE 327

Query: 169 SSGGPGSPFNHSAGACNNN 186
           SSGGPGSP N S GACNN+
Sbjct: 328 SSGGPGSPLNQSTGACNNS 342

BLAST of Cp4.1LG06g00080 vs. NCBI nr
Match: gi|567885763|ref|XP_006435440.1| (hypothetical protein CICLE_v10001729mg [Citrus clementina])

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 45/77 (58.44%), Postives = 53/77 (68.83%), Query Frame = 1

Query: 109 SPVEVVMGSFITDGGHKELRQADQIEQPPFTAPHKLAPIRAGMTGTSSSPPSLGTLSESS 168
           +PV+VV+GSF+ DG  KE + + ++E  P   P KLAP   G      SPPS GTLSESS
Sbjct: 258 TPVQVVVGSFLADG-RKESKSSHRMESLP--VPPKLAP--GGQPAGQCSPPSRGTLSESS 317

Query: 169 GGPGSPFNHSAGACNNN 186
           GGPGSP NHS GACNNN
Sbjct: 318 GGPGSPLNHSTGACNNN 329

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0T7_CUCSA4.4e-3083.95Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1[more]
D7UDF0_VITVI4.5e-1464.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g00700 PE=4 SV=... [more]
A5AT53_VITVI4.5e-1464.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030792 PE=4 SV=1[more]
V4T682_9ROSI1.6e-1158.44Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001729mg PE=4 SV=1[more]
A0A067GZU3_CITSI1.6e-1158.44Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019329mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449455639|ref|XP_004145559.1|6.4e-3083.95PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus][more]
gi|659105097|ref|XP_008453016.1|7.1e-2982.72PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo][more]
gi|147809818|emb|CAN64876.1|6.4e-1464.56hypothetical protein VITISV_030792 [Vitis vinifera][more]
gi|225457646|ref|XP_002275328.1|6.4e-1464.56PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera][more]
gi|567885763|ref|XP_006435440.1|2.3e-1158.44hypothetical protein CICLE_v10001729mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG06g00080.1Cp4.1LG06g00080.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31500FAMILY NOT NAMEDcoord: 109..190
score: 3.0
NoneNo IPR availablePANTHERPTHR31500:SF0AT HOOK MOTIF DNA-BINDING FAMILY PROTEINcoord: 109..190
score: 3.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG06g00080Cp4.1LG02g08710Cucurbita pepo (Zucchini)cpecpeB459
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG06g00080Cucumber (Gy14) v1cgycpeB0712
Cp4.1LG06g00080Silver-seed gourdcarcpeB0154