CmaCh09G000260 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh09G000260
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr09 : 137313 .. 137927 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGGTCATGTTACTTGTCCCCAGCGACAATATGTTTTTGAAATTCAAATTTATAAAGTTAGCAGCAGGAGGAGTCCCGCCTGTTGAAAAAAAAAAATCGGAACCCTTGAAGCTGAGGTTCTGGTTCTGAAGCCTTTCAATTTGTTTCCCCTTTTTGTTTTTCATGTCCGCTAATTTTCCTGTATTATTTGGTAGGTGTATTGGATTTTTTTGCTCATTTTCCCCCAATTTCTGTCTTATTCCTTTATTTGCAGTCTTTGTTTATTTATTTATTTGTATTTTTGGAGAATCTTTACTGTGAAATTCAAAATTGGAAAATAATTTCTTACTCAATGATGCGGGTTTTCTTCTTCCTCAGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

mRNA sequence

ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

Coding sequence (CDS)

ATGGGGCTGAAACAGTGGTCGGCACCTTCTCCATTTCTCTCTCGCCCTTTCTCCACAAAAAAGGAATTGAGAGCCGTGGCGGCTCTTAAGATGAGTTCAGTACAATCGCAACAGCCGGTTTTGCCGGGCATGCATTCGCCCGTTGGCACCGACGGCCTCTACAACCCCGTTGCCGCCGCCTCTCCCACCTACCAGCCCTCCATCGTCGGAGTTACTGGTAATGCTGGTGCCGGTGAATCTGCCCGTGAATCGTTGACATGA

Protein sequence

MGLKQWSAPSPFLSRPFSTKKELRAVAALKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARESLT
Homology
[Close]
BLAST of CmaCh09G000260 vs. TrEMBL
Match: A0A0A0L0T7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.7e-10
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SV SQQPV+  MH P G DG+Y PVA ASPTYQ S VGV GNAGA  SAR++
Sbjct: 19 LQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDA 74

[Close]
BLAST of CmaCh09G000260 vs. NCBI nr
Match: gi|659105097|ref|XP_008453016.1| (PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-10
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SVQSQQPV+  MH P G DG+Y PV AASPTYQ S VGV GNAGA  SARE+
Sbjct: 19 LQKNSVQSQQPVMQSMHLPFGADGVYKPVTAASPTYQSSNVGVAGNAGADGSAREA 74

[Close]
BLAST of CmaCh09G000260 vs. NCBI nr
Match: gi|449455639|ref|XP_004145559.1| (PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 9.7e-10
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 

Query: 29 LKMSSVQSQQPVLPGMHSPVGTDGLYNPVAAASPTYQPSIVGVTGNAGAGESARES 85
          L+ +SV SQQPV+  MH P G DG+Y PVA ASPTYQ S VGV GNAGA  SAR++
Sbjct: 19 LQKNSVPSQQPVMQSMHLPFGADGVYKPVATASPTYQSSSVGVAGNAGADGSARDA 74

The following BLAST results are available for this feature:
BLAST of CmaCh09G000260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh09G000260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0T7_CUCSA6.7e-1064.29Uncharacterized protein OS=Cucumis sativus GN=Csa_4G664470 PE=4 SV=1[more]
BLAST of CmaCh09G000260 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh09G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105097|ref|XP_008453016.1|1.1e-1067.86PREDICTED: putative DNA-binding protein ESCAROLA [Cucumis melo][more]
gi|449455639|ref|XP_004145559.1|9.7e-1064.29PREDICTED: AT-hook motif nuclear-localized protein 10 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh09G000260.1CmaCh09G000260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh09G000260CmoCh01G020980Cucurbita moschata (Rifu)cmacmoB047
CmaCh09G000260Lsi04G024210Bottle gourd (USVL1VR-Ls)cmalsiB028
CmaCh09G000260Cp4.1LG02g08710Cucurbita pepo (Zucchini)cmacpeB045
CmaCh09G000260Cp4.1LG06g00080Cucurbita pepo (Zucchini)cmacpeB060
CmaCh09G000260MELO3C017058.2Melon (DHL92) v3.6.1cmamedB036
CmaCh09G000260CsaV3_4G037640Cucumber (Chinese Long) v3cmacucB0031
CmaCh09G000260Cla97C11G225140Watermelon (97103) v2cmawmbB022
CmaCh09G000260Bhi09G002356Wax gourdcmawgoB0029
CmaCh09G000260CsGy4G025560Cucumber (Gy14) v2cgybcmaB469
CmaCh09G000260Carg21347Silver-seed gourdcarcmaB0501
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh09G000260CmaCh01G020390Cucurbita maxima (Rimu)cmacmaB051
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh09G000260Cucumber (Gy14) v1cgycmaB0751
CmaCh09G000260Cucurbita moschata (Rifu)cmacmoB027
CmaCh09G000260Wild cucumber (PI 183967)cmacpiB025
CmaCh09G000260Cucumber (Chinese Long) v2cmacuB024
CmaCh09G000260Melon (DHL92) v3.5.1cmameB037
CmaCh09G000260Watermelon (Charleston Gray)cmawcgB017
CmaCh09G000260Watermelon (97103) v1cmawmB039
CmaCh09G000260Silver-seed gourdcarcmaB0134